Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0136200 Rhododendron simsii HOM05D006668 ORTHO05D008252 1.3e-255 885.9 471 100.0
vmacro12351 Vaccinium macrocarpon HOM05D006668 ORTHO05D008252 4.3e-182 641.7 477 78.2
Actinidia10993 Actinidia chinensis HOM05D006668 ORTHO05D008252 4.0e-119 432.6 500 56.4
Hma1.2p1_0002F.1_g002330 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 1.2e-78 298.1 503 44.3
QL08p040692 Quercus lobata HOM05D006668 ORTHO05D008252 1.4e-76 291.2 450 47.3
GSVIVG01020613001 Vitis vinifera HOM05D006668 ORTHO05D008252 9.3e-76 288.5 454 45.8
TAR627G0647 Trochodendron aralioides HOM05D006668 ORTHO05D008252 2.5e-73 280.4 502 41.8
Hma1.2p1_0002F.1_g002320 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 4.5e-70 269.6 200 71.0
Thecc.02G187500 Theobroma cacao HOM05D006668 ORTHO05D008252 5.1e-66 256.1 487 41.7
COL.COLO4_07343 Corchorus olitorius HOM05D006668 ORTHO05D008252 6.7e-66 255.8 506 41.1
Cfa014669 Carpinus fangiana HOM05D006668 ORTHO05D008252 8.7e-66 255.4 513 40.5
Duzib132G0616 Durio zibethinus HOM05D006668 ORTHO05D008252 2.1e-64 250.8 389 46.3
Gohir.A08G243900 Gossypium hirsutum HOM05D006668 ORTHO05D008252 2.1e-64 250.8 485 42.1
Gorai.004G282700 Gossypium raimondii HOM05D006668 ORTHO05D008252 2.1e-64 250.8 486 42.8
Oeu036086.1 Olea europaea HOM05D006668 ORTHO05D008252 1.4e-63 248.1 428 43.0
Gohir.D08G264800 Gossypium hirsutum HOM05D006668 ORTHO05D008252 3.4e-62 243.4 486 42.6
Prupe.2G094200 Prunus persica HOM05D006668 ORTHO05D008252 8.4e-61 238.8 444 42.6
Manes.12G086300 Manihot esculenta HOM05D006668 ORTHO05D008252 1.1e-60 238.4 500 39.2
Atru.chr6.2861 Acer truncatum HOM05D006668 ORTHO05D008252 1.4e-60 238.0 410 45.6
Cpa.g.sc165.1 Carica papaya HOM05D006668 ORTHO05D008252 2.5e-60 237.3 494 40.5
Cc05_g07800 Coffea canephora HOM05D006668 ORTHO05D008252 5.5e-60 236.1 440 40.7
Peaxi162Scf00189g00018 Petunia axillaris HOM05D006668 ORTHO05D008252 1.6e-59 234.6 426 43.2
Nn1g06398 Nelumbo nucifera HOM05D006668 ORTHO05D008252 3.5e-59 233.4 430 42.8
Ciclev10015198m.g Citrus clementina HOM05D006668 ORTHO05D008252 6.7e-58 229.2 484 40.9
MD15G1126800 Malus domestica HOM05D006668 ORTHO05D008252 3.3e-57 226.9 408 44.4
Glyma.06G287100 Glycine max HOM05D006668 ORTHO05D008252 5.7e-57 226.1 483 38.7
Lalb_Chr03g0029681 Lupinus albus HOM05D006668 ORTHO05D008252 1.4e-55 221.5 507 37.3
CiPaw.03G182600 Carya illinoinensis HOM05D006668 ORTHO05D008252 5.3e-55 219.5 502 37.6
DCAR_009761 Daucus carota HOM05D006668 ORTHO05D008252 1.7e-53 214.5 489 37.0
TWI59G1373 Tripterygium wilfordii HOM05D006668 ORTHO05D008252 1.7e-53 214.5 415 39.8
CANSAT54G0862 Cannabis sativa HOM05D006668 ORTHO05D008252 3.2e-52 210.3 325 46.2
PGR142G0029 Punica granatum HOM05D006668 ORTHO05D008252 3.5e-51 206.8 442 40.3
PSO675G8266 Papaver somniferum HOM05D006668 ORTHO05D008252 6.7e-50 202.6 503 35.8
Lj3g0004052 Lotus japonicus HOM05D006668 ORTHO05D008252 8.7e-50 202.2 493 35.7
CAN.G1808.7 Capsicum annuum HOM05D006668 ORTHO05D008252 1.1e-49 201.8 382 43.2
Migut.M00152 Erythranthe guttata HOM05D006668 ORTHO05D008252 1.5e-49 201.4 306 44.4
FAN08G3049 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.5e-49 201.4 388 41.0
PGSC0003DMG400009383 Solanum tuberosum HOM05D006668 ORTHO05D008252 1.5e-49 201.4 412 40.5
Glyma.12G119000 Glycine max HOM05D006668 ORTHO05D008252 2.5e-49 200.7 482 38.6
SalBow7G4646 Salvia bowleyana HOM05D006668 ORTHO05D008252 2.5e-49 200.7 320 42.5
FvH4_5g30510 Fragaria vesca HOM05D006668 ORTHO05D008252 1.6e-48 198.0 385 41.3
PSO541G3384 Papaver somniferum HOM05D006668 ORTHO05D008252 6.3e-48 196.1 505 35.0
RcHm_v2.0_Chr7g0225261 Rosa chinensis HOM05D006668 ORTHO05D008252 8.2e-48 195.7 393 38.9
arahy.Tifrunner.gnm1.ann1.Y4MWM5 Arachis hypogaea HOM05D006668 ORTHO05D008252 1.1e-47 195.3 509 35.2
FAN18G2410 Fragaria x ananassa HOM05D006668 ORTHO05D008252 1.4e-47 194.9 385 40.0
FAN13G2061 Fragaria x ananassa HOM05D006668 ORTHO05D008252 3.1e-47 193.7 491 37.1
Ca_18916_v3 Cicer arietinum L. HOM05D006668 ORTHO05D008252 5.3e-47 193.0 480 36.2
Sopen07g027510 Solanum pennellii HOM05D006668 ORTHO05D008252 1.2e-46 191.8 432 39.8
VMungo0037G0001 Vigna mungo HOM05D006668 ORTHO05D008252 7.7e-46 189.1 502 35.1
CSS0027561 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.0e-45 188.7 247 54.7
CSS0037366 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 1.3e-45 188.3 247 54.7
Solyc07g053560.3 Solanum lycopersicum HOM05D006668 ORTHO05D008252 1.3e-45 188.3 489 36.4
Sed0009608 Sechium edule HOM05D006668 ORTHO05D008252 1.7e-45 188.0 501 34.7
Medtr4g079100 Medicago truncatula HOM05D006668 ORTHO05D008252 2.9e-45 187.2 479 38.0
Sp2g08980 Schrenkiella parvula HOM05D006668 ORTHO05D008252 7.2e-44 182.6 406 38.7
MELO3C018863.2 Cucumis melo HOM05D006668 ORTHO05D008252 1.6e-43 181.4 418 37.1
Sc12g0003270 Simmondsia chinensis HOM05D006668 ORTHO05D008252 1.6e-43 181.4 482 34.2
SGA_v2.0_scaffold70G23480 Striga asiatica HOM05D006668 ORTHO05D008252 1.6e-43 181.4 333 39.3
MBI06_g42697_MAGBIO Magnolia biondii HOM05D006668 ORTHO05D008252 2.7e-43 180.6 497 34.8
Lsat_1_v5_gn_8_69500 Lactuca sativa HOM05D006668 ORTHO05D008252 3.6e-43 180.3 381 37.3
Aqoxy1G02297 Aquilegia oxysepala HOM05D006668 ORTHO05D008252 4.6e-43 179.9 513 32.9
CSS0030364 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 3.9e-42 176.8 130 75.4
Phvul.010G089800 Phaseolus vulgaris HOM05D006668 ORTHO05D008252 6.7e-42 176.0 481 36.8
Haze_13261 Corylus avellana HOM05D006668 ORTHO05D008252 1.1e-41 175.3 170 57.6
ClCG03G006150 Citrullus lanatus HOM05D006668 ORTHO05D008252 2.0e-41 174.5 423 36.6
CSS0015867 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 2.5e-41 174.1 130 74.6
Psat7g136840 Pisum sativum HOM05D006668 ORTHO05D008252 7.4e-41 172.6 430 37.4
Aa31LG5G3090 Aethionema arabicum HOM05D006668 ORTHO05D008252 1.3e-40 171.8 500 37.2
THA.LOC104801157 Tarenaya hassleriana HOM05D006668 ORTHO05D008252 1.3e-40 171.8 479 35.7
TPR.G14253 Trifolium pratense HOM05D006668 ORTHO05D008252 2.8e-40 170.6 484 33.3
Potri.017G017200 Populus trichocarpa HOM05D006668 ORTHO05D008252 3.7e-40 170.2 524 35.5
Hund01006 Selenicereus undatus HOM05D006668 ORTHO05D008252 4.8e-40 169.9 520 33.7
AL8G15870 Arabidopsis lyrata HOM05D006668 ORTHO05D008252 6.3e-40 169.5 392 38.0
Thhalv10003234m.g Eutrema salsugineum HOM05D006668 ORTHO05D008252 1.1e-39 168.7 268 44.4
Oeu016899.1 Olea europaea HOM05D006668 ORTHO05D008252 1.4e-39 168.3 298 43.0
BcaC04g21861 Brassica carinata HOM05D006668 ORTHO05D008252 3.1e-39 167.2 388 40.5
Nitab4.5_0000621g0040 Nicotiana tabacum HOM05D006668 ORTHO05D008252 5.3e-39 166.4 412 38.6
BolC9t55549H Brassica oleracea HOM05D006668 ORTHO05D008252 6.9e-39 166.0 387 40.1
CARHR179120 Cardamine hirsuta HOM05D006668 ORTHO05D008252 2.0e-38 164.5 221 51.1
C09p26530 Brassica napus HOM05D006668 ORTHO05D008252 2.6e-38 164.1 387 39.8
Carub.0008s0437 Capsella rubella HOM05D006668 ORTHO05D008252 2.6e-38 164.1 398 37.4
CsaV3_7G003140 Cucumis sativus L. HOM05D006668 ORTHO05D008252 3.4e-38 163.7 383 37.1
HanXRQChr17g0555041 Helianthus annuus HOM05D006668 ORTHO05D008252 2.2e-37 161.0 195 52.3
Nitab4.5_0006091g0020 Nicotiana tabacum HOM05D006668 ORTHO05D008252 2.9e-37 160.6 411 37.5
SGA_v2.0_scaffold58G20553 Striga asiatica HOM05D006668 ORTHO05D008252 5.0e-37 159.8 460 34.3
ClCG00G003780 Citrullus lanatus HOM05D006668 ORTHO05D008252 1.4e-36 158.3 424 34.4
ClCG02G002300 Citrullus lanatus HOM05D006668 ORTHO05D008252 1.4e-36 158.3 424 34.4
Duzib248G1400 Durio zibethinus HOM05D006668 ORTHO05D008252 1.4e-36 158.3 326 41.1
AT5G44150 Arabidopsis thaliana HOM05D006668 ORTHO05D008252 3.2e-36 157.1 383 37.1
BcaC06g31649 Brassica carinata HOM05D006668 ORTHO05D008252 5.5e-36 156.4 318 39.9
A09p20930 Brassica napus HOM05D006668 ORTHO05D008252 9.4e-36 155.6 480 35.2
BraA09t37693Z Brassica rapa HOM05D006668 ORTHO05D008252 9.4e-36 155.6 480 35.2
MSTRG.5024 Avicennia marina HOM05D006668 ORTHO05D008252 4.7e-35 153.3 472 32.4
CDE10G0622 Ceratophyllum demersum HOM05D006668 ORTHO05D008252 1.5e-33 148.3 429 35.0
Zm00001eb295870 Zea mays HOM05D006668 ORTHO05D008252 5.7e-33 146.4 498 31.5
ECA232G0319 Erigeron canadensis HOM05D006668 ORTHO05D008252 1.7e-32 144.8 420 33.6
Sabra17G0013400 Salix brachista HOM05D006668 ORTHO05D008252 8.2e-32 142.5 513 34.1
Dinv06849 Davidia involucrata HOM05D006668 ORTHO05D008252 1.1e-28 132.1 326 39.0
HPP92_023281 Vanilla planifolia HOM05D006668 ORTHO05D008252 8.8e-26 122.5 442 31.7
Eucgr.K01063 Eucalyptus grandis HOM05D006668 ORTHO05D008252 6.3e-24 116.3 481 29.5
BcaC04g21859 Brassica carinata HOM05D006668 ORTHO05D008252 1.8e-23 114.8 190 46.3
EL10Ac9g20828 Beta vulgaris HOM05D006668 ORTHO05D008252 5.3e-23 113.2 500 29.0
Sed0015399 Sechium edule HOM05D006668 ORTHO05D008252 1.5e-20 105.1 494 27.1
Actinidia11116 Actinidia chinensis HOM05D006668 ORTHO05D008252 7.2e-20 102.8 245 38.0
AUR62036068 Chenopodium quinoa HOM05D006668 ORTHO05D008252 4.0e-18 97.1 501 26.3
Os05g0564000 Oryza sativa ssp. japonica HOM05D006668 ORTHO05D008252 4.0e-18 97.1 198 34.8
SEGI_30235 Sequoiadendron giganteum HOM05D006668 ORTHO05D008252 2.6e-17 94.4 542 26.9
ATR0602G055 Amborella trichopoda HOM05D006668 ORTHO05D008252 2.9e-13 80.9 249 31.3
ATR0602G285 Amborella trichopoda HOM05D006668 ORTHO05D008252 9.8e-09 65.9 114 43.0
Sabra07G0109400 Salix brachista HOM05D006668 ORTHO05D008252 3.7e-08 63.9 117 37.6
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 8.3e-08 62.8 301 30.9
CSS0005901 Camellia sinensis var. sinensis HOM05D054010 ORTHO05D008252 7.0e-07 59.7 33 84.8
CSS0008520 Camellia sinensis var. sinensis HOM05D054010 ORTHO05D008252 7.0e-07 59.7 33 84.8
Mapoly0050s0110 Marchantia polymorpha HOM05D006668 ORTHO05D008252 9.1e-07 59.3 197 27.9
unitig_46.g18247 Utricularia gibba HOM05D006668 ORTHO05D008252 1.2e-06 58.9 325 28.6
Ah.01g015540 Amaranthus hybridus HOM05D006668 ORTHO05D008252 2.0e-06 58.2 137 35.0


User provided reference genes

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