Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.7e-142 509.2 246 100.0
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 4.2e-128 461.5 242 90.5
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.8e-105 385.2 255 72.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.1e-104 383.6 255 71.4
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 1.1e-104 383.6 255 72.2
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.9e-104 382.9 255 71.8
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 1.1e-99 367.1 256 68.0
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 3.4e-98 362.1 248 69.8
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.5e-96 355.9 259 66.8
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 2.5e-96 355.9 248 70.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 1.6e-95 353.2 243 72.0
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 6.1e-95 351.3 254 65.4
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 1.0e-94 350.5 259 66.0
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.0e-94 350.5 260 66.5
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.0e-94 350.5 254 66.1
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 1.4e-94 350.1 261 67.0
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 2.3e-94 349.4 254 64.6
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 5.7e-93 344.7 261 65.1
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.7e-93 344.7 254 68.5
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 7.4e-93 344.4 257 64.2
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 1.3e-92 343.6 253 67.2
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.7e-92 343.2 249 65.1
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.7e-92 343.2 257 65.8
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.8e-92 342.4 251 66.9
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 4.8e-92 341.7 256 63.7
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 4.8e-92 341.7 256 63.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 8.2e-92 340.9 263 65.4
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 1.1e-91 340.5 260 64.6
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.8e-91 339.7 256 63.7
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 4.1e-91 338.6 254 63.4
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 9.1e-91 337.4 258 63.2
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 9.1e-91 337.4 252 66.3
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 9.1e-91 337.4 257 65.4
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 2.0e-90 336.3 251 66.9
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 4.5e-90 335.1 256 63.7
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.7e-89 333.2 250 66.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 2.2e-89 332.8 245 64.5
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 2.9e-89 332.4 256 64.5
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 2.9e-89 332.4 253 70.4
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 3.8e-89 332.0 242 65.3
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 1.9e-88 329.7 252 68.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.2e-87 327.0 254 65.0
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.6e-87 326.6 256 64.5
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.7e-87 325.9 262 61.5
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 3.6e-87 325.5 251 64.9
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.7e-87 325.1 208 74.0
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 1.4e-86 323.6 254 66.5
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.8e-86 323.2 255 67.1
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 5.2e-86 321.6 245 62.9
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 5.2e-86 321.6 249 61.4
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.7e-86 321.2 253 63.2
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 8.8e-86 320.9 249 61.0
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 2.6e-85 319.3 255 65.1
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 2.6e-85 319.3 255 65.1
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 3.3e-85 318.9 255 62.4
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 5.7e-85 318.2 256 61.3
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 7.5e-85 317.8 255 62.7
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 9.7e-85 317.4 247 63.6
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 9.7e-85 317.4 255 65.1
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 9.7e-85 317.4 176 83.0
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 9.7e-85 317.4 240 65.8
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 9.7e-85 317.4 240 65.8
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.2e-84 316.2 257 61.1
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 2.2e-84 316.2 241 65.1
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.8e-84 315.8 256 60.9
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 3.7e-84 315.5 254 63.8
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 3.7e-84 315.5 253 62.1
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.7e-84 315.5 256 60.9
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.1e-83 313.9 260 60.0
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.1e-83 313.9 249 61.8
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.4e-83 312.8 247 63.2
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 2.4e-83 312.8 258 60.9
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 3.1e-83 312.4 289 57.4
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 7.0e-83 311.2 257 62.3
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 9.1e-83 310.8 247 62.8
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-82 310.1 247 62.3
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.6e-82 310.1 252 61.1
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.6e-82 310.1 258 60.1
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.6e-82 310.1 255 60.8
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 2.0e-82 309.7 257 60.3
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.7e-82 309.3 249 61.0
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 2.7e-82 309.3 260 61.2
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 4.5e-82 308.5 261 59.8
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 5.9e-82 308.1 256 60.2
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 7.7e-82 307.8 250 60.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.0e-81 307.4 236 63.1
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.7e-81 306.6 237 62.9
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 2.2e-81 306.2 175 79.4
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 2.9e-81 305.8 257 59.5
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 2.9e-81 305.8 259 59.8
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 2.9e-81 305.8 257 58.4
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 5.0e-81 305.1 261 60.2
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 5.0e-81 305.1 250 62.4
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 5.0e-81 305.1 250 62.4
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-80 303.5 252 60.3
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.9e-80 303.1 257 60.3
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 3.2e-80 302.4 257 58.8
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 5.5e-80 301.6 254 60.6
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 9.4e-80 300.8 259 58.7
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 1.2e-79 300.4 253 59.7
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.2e-79 300.4 250 61.2
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.6e-79 298.9 243 62.6
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.6e-79 298.9 257 57.6
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 8.0e-79 297.7 254 59.4
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.4e-78 297.0 251 59.8
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.0e-78 295.8 211 65.9
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.5e-77 293.5 245 61.6
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 1.5e-77 293.5 257 56.4
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.0e-77 293.1 216 65.3
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.4e-77 292.4 179 73.7
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 7.5e-77 291.2 249 58.6
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 7.5e-77 291.2 253 64.0
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 2.8e-76 289.3 227 62.6
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 4.8e-76 288.5 250 58.4
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 6.3e-76 288.1 258 55.4
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 8.3e-76 287.7 246 58.1
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 5.9e-74 281.6 213 64.3
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 1.1e-72 277.3 246 56.1
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 2.1e-71 273.1 248 56.5
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 3.6e-71 272.3 244 57.4
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 8.0e-71 271.2 210 64.3
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 3.0e-70 269.2 147 85.0
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 5.2e-70 268.5 243 56.0
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.8e-69 264.2 256 53.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.7e-68 263.5 218 59.2
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.1e-67 260.8 209 62.2
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 5.4e-67 258.5 231 57.6
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.2e-66 257.3 256 52.3
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.9e-66 255.0 150 79.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 1.2e-63 247.3 137 80.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.8e-62 243.4 181 63.5
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.0e-61 240.0 166 63.9
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 2.0e-61 240.0 254 53.1
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-60 237.3 246 51.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 6.4e-60 235.0 164 63.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 3.2e-59 232.6 256 49.2
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 9.2e-59 231.1 263 48.7
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.9e-57 225.7 167 60.5
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 9.5e-56 221.1 173 56.6
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 4.7e-55 218.8 166 56.6
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.0e-55 218.0 152 68.4
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 8.9e-54 214.5 174 55.2
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.6e-53 213.0 142 67.6
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 2.1e-47 193.4 111 77.5
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.8e-36 156.0 211 45.5
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 2.4e-35 153.3 90 75.6
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.0e-33 147.9 93 72.0
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-31 140.6 142 53.5
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 2.8e-31 139.8 84 77.4
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 6.2e-31 138.7 99 63.6
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.9e-28 129.8 85 65.9
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 4.2e-27 125.9 213 31.5
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.0e-25 121.3 78 73.1
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 1.5e-24 117.5 63 82.5
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 2.5e-24 116.7 137 40.9
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 4.8e-23 112.5 73 71.2
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 4.5e-21 105.9 65 72.3
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 7.6e-21 105.1 99 54.5
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 7.1e-19 98.6 67 65.7
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 3.6e-15 86.3 86 50.0
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 3.1e-14 83.2 48 77.1
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-13 81.3 46 76.1
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.2e-11 73.2 46 69.6
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.2e-11 73.2 46 69.6
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 7.9e-10 68.6 39 74.4
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.5e-08 63.5 74 44.6
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.5e-08 63.5 43 67.4


User provided reference genes

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