Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 8.1e-271 936.8 585 100.0
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 3.3e-107 393.3 598 50.3
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 4.7e-85 319.7 625 40.8
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.0e-47 195.7 273 53.1
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 1.5e-46 191.8 589 35.5
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 2.5e-38 164.5 301 42.9
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 3.3e-38 164.1 609 31.4
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.2e-37 162.2 223 50.2
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 6.8e-36 156.4 259 44.4
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 1.3e-34 152.1 263 42.2
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 6.4e-34 149.8 589 32.4
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 1.9e-33 148.3 267 41.6
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 3.2e-33 147.5 285 43.2
CSS0037917 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 9.2e-33 146.0 208 48.6
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 1.6e-32 145.2 259 41.7
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 4.6e-32 143.7 606 29.2
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 7.8e-32 142.9 257 42.8
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 1.0e-31 142.5 262 42.7
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 1.7e-31 141.7 248 43.1
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 3.9e-31 140.6 365 33.2
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 4.3e-30 137.1 254 42.5
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 7.3e-30 136.3 266 41.7
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 1.2e-29 135.6 275 40.7
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 1.2e-29 135.6 258 40.7
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 2.1e-29 134.8 249 40.6
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 2.1e-29 134.8 236 42.4
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 2.1e-29 134.8 266 40.2
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 4.7e-29 133.7 315 35.9
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 6.2e-29 133.3 255 38.8
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 1.1e-28 132.5 260 41.5
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 3.1e-28 131.0 265 40.8
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 4.0e-28 130.6 261 38.3
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 5.2e-28 130.2 279 37.3
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 1.2e-27 129.0 261 37.9
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 1.5e-27 128.6 254 39.4
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 2.0e-27 128.3 292 34.9
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 2.0e-27 128.3 245 42.9
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 5.8e-27 126.7 256 40.6
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 7.6e-27 126.3 257 39.3
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 9.9e-27 125.9 265 37.7
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 1.3e-26 125.6 267 40.1
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 1.3e-26 125.6 268 38.4
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 2.2e-26 124.8 265 39.6
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 2.9e-26 124.4 255 39.2
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 2.9e-26 124.4 283 36.4
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.9e-26 124.4 283 36.4
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 6.4e-26 123.2 244 42.2
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 8.4e-26 122.9 265 37.7
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 4.2e-25 120.6 251 37.1
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 2.7e-24 117.9 264 38.6
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 3.5e-24 117.5 246 39.0
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 1.0e-23 115.9 266 39.1
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 1.3e-23 115.5 275 37.8
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 1.7e-23 115.2 238 37.4
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 3.0e-23 114.4 351 32.5
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 8.7e-23 112.8 256 37.5
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 2.5e-22 111.3 257 36.6
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 2.5e-22 111.3 207 42.0
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 3.3e-22 110.9 265 34.3
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 4.3e-22 110.5 264 34.1
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 5.6e-22 110.2 231 38.1
Actinidia11494 Actinidia chinensis HOM05D040087 ORTHO05D008119 9.6e-22 109.4 89 71.9
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 3.6e-21 107.5 229 39.7
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 8.1e-21 106.3 256 34.8
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 8.1e-21 106.3 206 42.2
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 8.1e-21 106.3 227 40.1
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.4e-20 105.5 250 37.2
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 2.4e-20 104.8 212 40.6
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 3.1e-20 104.4 255 35.3
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 4.0e-20 104.0 254 35.0
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 9.0e-20 102.8 254 34.6
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 1.2e-19 102.4 254 33.9
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 1.2e-19 102.4 254 33.9
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 2.6e-19 101.3 247 37.2
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 3.4e-19 100.9 323 33.4
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 3.4e-19 100.9 206 38.8
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 9.9e-19 99.4 255 34.1
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 2.2e-18 98.2 220 35.9
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 4.9e-18 97.1 255 36.9
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 6.4e-18 96.7 207 36.7
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 1.1e-17 95.9 315 28.6
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 1.1e-17 95.9 270 33.3
unitig_22.g6617 Utricularia gibba HOM05D006830 ORTHO05D008119 2.4e-17 94.7 270 31.1
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 2.7e-16 91.3 264 34.5
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 4.6e-16 90.5 182 39.0
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 7.8e-16 89.7 276 33.3
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 7.8e-16 89.7 281 33.1
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 1.3e-15 89.0 253 32.8
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 3.9e-15 87.4 207 35.7
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 3.9e-15 87.4 267 32.6
CSS0011973 Camellia sinensis var. sinensis HOM05D040087 ORTHO05D008119 5.1e-15 87.0 167 43.1
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 6.6e-15 86.7 207 35.3
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 6.6e-15 86.7 224 35.7
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 1.5e-14 85.5 101 47.5
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 4.3e-14 84.0 209 35.9
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 9.6e-14 82.8 208 35.1
CSS0023535 Camellia sinensis var. sinensis HOM05D040087 ORTHO05D008119 1.1e-12 79.3 187 38.5
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 5.8e-11 73.6 254 29.5
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 9.9e-11 72.8 230 36.5
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 1.3e-10 72.4 68 61.8
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 1.1e-09 69.3 60 63.3
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 1.1e-09 69.3 60 63.3
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 1.1e-09 69.3 61 65.6
Os03g0333000 Oryza sativa ssp. japonica HOM05D006830 ORTHO05D008119 1.6e-08 65.5 199 33.7
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 1.1e-06 59.3 63 52.4


User provided reference genes

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