Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.6e-253 877.5 461 100.0
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 6.5e-175 617.8 489 71.8
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 1.4e-153 547.0 473 64.3
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 2.4e-153 546.2 475 64.0
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 3.1e-148 529.3 460 63.0
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.7e-146 522.3 461 64.2
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 7.0e-145 518.1 461 62.9
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 2.5e-134 483.0 525 54.5
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 9.5e-134 481.1 454 60.4
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.4e-129 467.2 472 56.6
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.4e-129 466.5 477 54.7
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 5.1e-127 458.8 466 55.8
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 1.6e-125 453.8 477 54.9
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 3.1e-124 449.5 478 54.2
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 5.2e-124 448.7 469 55.0
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 5.2e-124 448.7 463 53.8
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 1.5e-123 447.2 469 55.0
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 4.4e-123 445.7 471 54.4
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 9.9e-123 444.5 464 54.7
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 1.7e-122 443.7 591 47.2
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 1.1e-121 441.0 464 53.7
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 7.1e-121 438.3 468 54.3
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 6.0e-120 435.3 483 52.6
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.0e-119 433.0 467 51.8
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 8.7e-119 431.4 474 51.9
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 1.1e-118 431.0 466 54.1
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 1.1e-118 431.0 467 51.8
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 1.5e-118 430.6 464 53.2
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 2.5e-118 429.9 465 53.8
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.1e-117 426.8 473 52.9
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 2.1e-117 426.8 468 53.2
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.6e-117 426.0 467 52.9
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 1.4e-116 424.1 482 50.8
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.1e-116 422.9 467 52.5
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 1.3e-114 417.5 467 51.4
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 2.2e-114 416.8 462 51.7
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 2.4e-113 413.3 455 52.1
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.2e-113 412.9 464 53.4
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 7.1e-113 411.8 453 52.3
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 1.2e-112 411.0 466 52.6
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 1.2e-112 411.0 464 52.2
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.7e-112 409.8 445 51.7
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 3.5e-112 409.5 462 51.7
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 3.5e-112 409.5 469 51.2
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-111 407.1 460 51.1
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.3e-111 406.8 448 53.1
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.3e-111 406.8 464 51.7
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 5.1e-111 405.6 449 52.1
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 5.1e-111 405.6 450 51.8
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-110 404.4 462 51.5
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.1e-110 404.4 455 52.7
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.5e-110 404.1 454 51.5
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.5e-110 404.1 446 52.5
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 2.8e-109 399.8 466 51.1
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.8e-109 399.8 462 49.6
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 2.8e-109 399.8 472 49.6
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 4.8e-109 399.1 462 49.6
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.4e-108 397.5 462 49.4
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 1.8e-108 397.1 337 64.4
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.8e-108 397.1 451 50.8
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.4e-108 396.7 469 49.3
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.2e-107 394.4 449 50.8
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.6e-107 391.7 449 50.6
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 7.6e-107 391.7 449 50.1
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 9.9e-107 391.3 449 48.8
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.2e-106 390.2 459 50.3
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 4.9e-106 389.0 437 50.1
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 6.4e-106 388.7 466 50.2
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 8.4e-106 388.3 466 50.0
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 8.4e-106 388.3 437 50.3
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 1.9e-105 387.1 437 50.3
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 3.2e-105 386.3 460 50.0
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 2.1e-104 383.6 455 48.1
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 4.6e-104 382.5 475 46.5
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 2.3e-103 380.2 469 46.9
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 3.0e-103 379.8 452 48.9
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.9e-103 379.4 465 48.8
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 3.9e-103 379.4 465 49.7
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 1.1e-102 377.9 464 49.4
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.1e-102 377.9 460 48.0
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 1.5e-102 377.5 460 48.0
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 4.3e-102 375.9 466 48.9
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.6e-102 374.8 462 48.3
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.1e-101 373.6 434 49.8
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 2.8e-101 373.2 600 40.7
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 8.1e-101 371.7 466 48.9
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.1e-100 371.3 460 46.7
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 1.8e-100 370.5 477 46.5
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 2.4e-100 370.2 456 46.3
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 4.0e-100 369.4 466 48.7
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 4.0e-100 369.4 483 45.3
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 6.9e-100 368.6 451 49.2
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 9.0e-100 368.2 466 48.7
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.3e-98 364.4 430 48.8
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 1.7e-98 364.0 452 49.1
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 2.2e-98 363.6 492 44.3
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 4.6e-96 355.9 425 49.4
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 6.7e-95 352.1 452 47.8
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 1.1e-94 351.3 267 65.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 1.1e-94 351.3 473 46.9
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 8.2e-93 345.1 438 45.7
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 1.2e-91 341.3 436 48.2
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 3.4e-91 339.7 276 60.5
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.7e-90 337.4 445 45.4
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 2.9e-90 336.7 302 59.9
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 6.5e-90 335.5 465 46.2
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 9.3e-89 331.6 472 46.0
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 2.1e-88 330.5 451 44.8
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-88 330.5 297 58.6
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-88 330.5 297 58.6
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 2.7e-88 330.1 468 46.6
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 3.0e-87 326.6 413 47.9
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.8e-84 317.4 455 43.1
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.4e-84 317.0 456 43.0
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 1.2e-83 314.7 442 44.8
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 2.0e-83 313.9 262 62.2
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 4.5e-83 312.8 474 41.6
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 2.2e-82 310.5 265 61.9
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.9e-75 285.8 343 51.0
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 1.9e-73 280.8 438 40.4
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 1.6e-67 261.2 440 39.1
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 8.0e-64 248.8 430 38.6
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 8.0e-64 248.8 456 37.9
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 2.0e-62 244.2 429 38.2
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 1.6e-56 224.6 413 36.8
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 2.0e-51 207.6 136 72.8
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 1.6e-43 181.4 451 33.0
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 2.0e-43 181.0 261 39.8
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.0e-42 176.4 218 43.6
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.1e-40 171.0 448 31.7
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 4.7e-40 169.9 463 30.5
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.9e-35 152.9 439 29.6
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 1.2e-32 145.2 141 58.2
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 2.3e-31 141.0 237 35.0
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 1.6e-27 128.3 310 36.8
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.6e-27 128.3 106 58.5
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 4.6e-27 126.7 311 35.4
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.7e-26 124.8 441 26.8
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 9.5e-25 119.0 216 40.3
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 4.7e-24 116.7 213 39.9
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 1.5e-22 111.7 99 56.6
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 1.1e-20 105.5 430 28.6
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 5.4e-20 103.2 236 32.2
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 7.1e-20 102.8 143 49.7
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 7.8e-19 99.4 188 29.8
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 1.6e-16 91.7 152 32.2
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 2.4e-15 87.8 229 34.9
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 1.2e-14 85.5 104 44.2
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.9e-13 80.9 173 39.9
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 2.4e-12 77.8 141 41.8
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 2.1e-11 74.7 124 39.5
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 6.0e-11 73.2 130 38.5
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-10 72.4 113 40.7
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 3.3e-09 67.4 130 39.2
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 3.3e-09 67.4 130 39.2
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.1e-08 62.8 62 51.6
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.8e-07 61.6 62 51.6
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.9e-07 59.7 68 45.6
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.4e-06 57.0 63 47.6


User provided reference genes

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