Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0061400 Rhododendron simsii HOM05D000157 ORTHO05D338958 2.0e-100 369.0 177 100.0
Rhsim02G0145700 Rhododendron simsii HOM05D000157 ORTHO05D339504 1.0e-27 127.5 183 44.8
vmacro13337 Vaccinium macrocarpon HOM05D000086 ORTHO05D003012 5.5e-13 78.6 48 79.2
Rhsim07G0021000 Rhododendron simsii HOM05D000086 ORTHO05D003012 9.3e-13 77.8 52 75.0
GSVIVG01027524001 Vitis vinifera HOM05D000086 ORTHO05D003012 2.1e-12 76.6 48 77.1
Dinv32423 Davidia involucrata HOM05D000086 ORTHO05D003012 6.1e-12 75.1 48 77.1
Actinidia27829 Actinidia chinensis HOM05D000157 ORTHO05D003012 5.1e-11 72.0 67 58.2
Sabra14G0055500 Salix brachista HOM05D000086 ORTHO05D003012 5.1e-11 72.0 48 70.8
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 6.7e-11 71.6 52 69.2
Cpa.g.sc18.195 Carica papaya HOM05D000086 ORTHO05D003012 1.1e-10 70.9 48 68.8
Ciclev10022405m.g Citrus clementina HOM05D000086 ORTHO05D003012 1.1e-10 70.9 48 66.7
Sabra02G0121600 Salix brachista HOM05D000086 ORTHO05D003012 1.1e-10 70.9 48 68.8
MSTRG.20792 Avicennia marina HOM05D000086 ORTHO05D003012 1.9e-10 70.1 55 69.1
Lj7A519T40 Lonicera japonica HOM05D000086 ORTHO05D003012 1.9e-10 70.1 48 70.8
Atru.chr5.406 Acer truncatum HOM05D000086 ORTHO05D003012 2.5e-10 69.7 48 68.8
FAN01G3132 Fragaria x ananassa HOM05D000086 ORTHO05D003012 2.5e-10 69.7 48 68.8
FAN03G3059 Fragaria x ananassa HOM05D000086 ORTHO05D003012 2.5e-10 69.7 48 68.8
FAN10G2329 Fragaria x ananassa HOM05D000086 ORTHO05D003012 2.5e-10 69.7 48 68.8
FAN10G2927 Fragaria x ananassa HOM05D000086 ORTHO05D003012 2.5e-10 69.7 48 68.8
FvH4_7g13140 Fragaria vesca HOM05D000086 ORTHO05D003012 3.3e-10 69.3 48 66.7
FAN06G2050 Fragaria x ananassa HOM05D000086 ORTHO05D003012 3.3e-10 69.3 48 66.7
FAN06G3711 Fragaria x ananassa HOM05D000086 ORTHO05D003012 3.3e-10 69.3 48 66.7
Potri.014G076800 Populus trichocarpa HOM05D000086 ORTHO05D003012 3.3e-10 69.3 48 66.7
QL08p050647 Quercus lobata HOM05D000086 ORTHO05D003012 3.3e-10 69.3 48 70.8
RcHm_v2.0_Chr1g0352271 Rosa chinensis HOM05D000086 ORTHO05D003012 3.3e-10 69.3 48 66.7
Manes.01G262200 Manihot esculenta HOM05D000086 ORTHO05D003012 4.3e-10 68.9 56 66.1
Solyc01g091770.4 Solanum lycopersicum HOM05D000086 ORTHO05D003012 4.3e-10 68.9 48 70.8
Sopen01g037550 Solanum pennellii HOM05D000086 ORTHO05D003012 4.3e-10 68.9 48 70.8
PGSC0003DMG400017055 Solanum tuberosum HOM05D000086 ORTHO05D003012 4.3e-10 68.9 48 70.8
Prupe.2G154700 Prunus persica HOM05D000086 ORTHO05D003012 5.7e-10 68.6 52 63.5
Haze_15225 Corylus avellana HOM05D000086 ORTHO05D003012 7.4e-10 68.2 48 68.8
Migut.N01416 Erythranthe guttata HOM05D000086 ORTHO05D003012 7.4e-10 68.2 55 65.5
CANSAT56G2508 Cannabis sativa HOM05D000086 ORTHO05D003012 9.7e-10 67.8 60 61.7
COL.COLO4_12623 Corchorus olitorius HOM05D000086 ORTHO05D003012 9.7e-10 67.8 52 59.6
Potri.002G153400 Populus trichocarpa HOM05D000086 ORTHO05D003012 9.7e-10 67.8 48 68.8
Thecc.01G368400 Theobroma cacao HOM05D000086 ORTHO05D003012 9.7e-10 67.8 52 61.5
MD07G1128400 Malus domestica HOM05D000086 ORTHO05D003012 1.3e-09 67.4 53 64.2
Nitab4.5_0004550g0120 Nicotiana tabacum HOM05D000086 ORTHO05D003012 1.6e-09 67.0 47 70.2
Nitab4.5_0010430g0040 Nicotiana tabacum HOM05D000086 ORTHO05D003012 1.6e-09 67.0 47 70.2
Peaxi162Scf00021g00626 Petunia axillaris HOM05D000086 ORTHO05D003012 1.6e-09 67.0 47 70.2
TAR375G0405 Trochodendron aralioides HOM05D000157 ORTHO05D003012 1.6e-09 67.0 58 60.3
Aqoxy7G00452 Aquilegia oxysepala HOM05D000157 ORTHO05D003012 3.7e-09 65.9 48 64.6
Nn6g34263 Nelumbo nucifera HOM05D000086 ORTHO05D003012 3.7e-09 65.9 48 62.5
Actinidia38289 Actinidia chinensis HOM05D000086 ORTHO05D003012 4.8e-09 65.5 48 64.6
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 6.3e-09 65.1 52 57.7
Glyma.09G264300 Glycine max HOM05D000086 ORTHO05D003012 8.2e-09 64.7 57 61.4
Nn1g01352 Nelumbo nucifera HOM05D000086 ORTHO05D003012 8.2e-09 64.7 48 62.5
HanXRQChr04g0121791 Helianthus annuus HOM05D000086 ORTHO05D003012 1.1e-08 64.3 50 62.0
HanXRQChr06g0169041 Helianthus annuus HOM05D000086 ORTHO05D003012 1.1e-08 64.3 52 59.6
PSO478G4761 Papaver somniferum HOM05D000157 ORTHO05D003012 1.1e-08 64.3 56 62.5
PSO782G1834 Papaver somniferum HOM05D000157 ORTHO05D003012 1.1e-08 64.3 56 62.5
Duzib268G0857 Durio zibethinus HOM05D000086 ORTHO05D003012 1.4e-08 63.9 52 59.6
Eucgr.E00216 Eucalyptus grandis HOM05D000086 ORTHO05D003012 1.4e-08 63.9 48 62.5
Glyma.18G227700 Glycine max HOM05D000086 ORTHO05D003012 1.4e-08 63.9 57 59.6
Manes.05G040100 Manihot esculenta HOM05D000086 ORTHO05D003012 1.4e-08 63.9 49 67.3
Psat0s1132g0160 Pisum sativum HOM05D000058 ORTHO05D000255 1.4e-08 63.9 59 57.6
arahy.Tifrunner.gnm1.ann1.T385V0 Arachis hypogaea HOM05D000157 ORTHO05D003012 1.8e-08 63.5 48 62.5
CiPaw.01G053700 Carya illinoinensis HOM05D000086 ORTHO05D003012 1.8e-08 63.5 60 56.7
Cc02_g37240 Coffea canephora HOM05D000086 ORTHO05D003012 1.8e-08 63.5 47 66.0
arahy.Tifrunner.gnm1.ann1.JZ8562 Arachis hypogaea HOM05D000086 ORTHO05D003012 2.4e-08 63.2 48 62.5
Cfa004183 Carpinus fangiana HOM05D000086 ORTHO05D003012 2.4e-08 63.2 48 64.6
ECA236G3488 Erigeron canadensis HOM05D000086 ORTHO05D003012 2.4e-08 63.2 49 59.2
MSTRG.4877 Avicennia marina HOM05D000157 ORTHO05D003012 3.1e-08 62.8 45 66.7
Ca_07864_v3 Cicer arietinum L. HOM05D000086 ORTHO05D003012 3.1e-08 62.8 48 62.5
TWI14G1171 Tripterygium wilfordii HOM05D000086 ORTHO05D003012 3.1e-08 62.8 45 68.9
arahy.Tifrunner.gnm1.ann1.3MA1UZ Arachis hypogaea HOM05D000157 ORTHO05D003012 4.1e-08 62.4 48 60.4
Migut.B01689 Erythranthe guttata HOM05D000086 ORTHO05D003012 4.1e-08 62.4 48 68.8
TPR.G37737 Trifolium pratense HOM05D000086 ORTHO05D003012 4.1e-08 62.4 57 57.9
Medtr7g076250 Medicago truncatula HOM05D000086 ORTHO05D003012 5.3e-08 62.0 57 57.9
Phvul.008G070500 Phaseolus vulgaris HOM05D000086 ORTHO05D003012 5.3e-08 62.0 57 57.9
TAR374G0032 Trochodendron aralioides HOM05D000086 ORTHO05D003012 5.3e-08 62.0 56 57.1
CSS0024808 Camellia sinensis var. sinensis HOM05D000157 ORTHO05D003012 9.0e-08 61.2 49 61.2
TWI59G1393 Tripterygium wilfordii HOM05D000086 ORTHO05D003012 2.6e-07 59.7 44 65.9
DCAR_006907 Daucus carota HOM05D000086 ORTHO05D003012 3.4e-07 59.3 49 63.3
SGA_v2.0_scaffold11G05639 Striga asiatica HOM05D000086 ORTHO05D003012 3.4e-07 59.3 55 63.6
MELO3C022529.2 Cucumis melo HOM05D000086 ORTHO05D003012 4.5e-07 58.9 49 61.2
CsaV3_6G005840 Cucumis sativus L. HOM05D000086 ORTHO05D003012 4.5e-07 58.9 49 61.2
Lj1g0014519 Lotus japonicus HOM05D000086 ORTHO05D003012 5.9e-07 58.5 57 56.1
Gohir.A08G033200 Gossypium hirsutum HOM05D000086 ORTHO05D003012 7.7e-07 58.2 48 54.2
Gohir.D08G043900 Gossypium hirsutum HOM05D000157 ORTHO05D003012 7.7e-07 58.2 48 54.2
Gohir.D12G107200 Gossypium hirsutum HOM05D000086 ORTHO05D003012 7.7e-07 58.2 52 53.8
Gorai.004G042600 Gossypium raimondii HOM05D000086 ORTHO05D003012 7.7e-07 58.2 48 54.2
Sed0026610 Sechium edule HOM05D000086 ORTHO05D003012 7.7e-07 58.2 49 61.2
Gorai.008G116700 Gossypium raimondii HOM05D000086 ORTHO05D003012 1.3e-06 57.4 52 53.8
arahy.Tifrunner.gnm1.ann1.TH3RP9 Arachis hypogaea HOM05D000157 ORTHO05D003012 1.7e-06 57.0 48 56.2
Hund16962 Selenicereus undatus HOM05D000086 ORTHO05D003012 1.7e-06 57.0 48 60.4
arahy.Tifrunner.gnm1.ann1.7NY7XM Arachis hypogaea HOM05D000086 ORTHO05D003012 3.8e-06 55.8 48 56.2
Sed0002587 Sechium edule HOM05D000086 ORTHO05D003012 3.8e-06 55.8 49 55.1
CDE04G1569 Ceratophyllum demersum HOM05D000157 ORTHO05D003012 6.5e-06 55.1 53 49.1


User provided reference genes

Program Settings