Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 0.0e+00 1885.9 1051 100.0
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 0.0e+00 1146.3 1048 66.0
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.6e-261 906.7 1132 53.9
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.4e-260 903.7 1133 53.6
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.0e-235 820.1 1101 50.8
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 7.6e-203 711.8 1083 46.4
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 6.1e-168 595.9 1152 41.7
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 2.4e-164 583.9 986 45.3
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.2e-152 545.0 1156 39.7
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 9.7e-150 535.4 1096 41.5
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.3e-149 535.0 1117 39.5
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 2.2e-149 534.3 1122 39.1
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 8.2e-149 532.3 1127 38.4
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 1.0e-146 525.4 1112 39.3
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 4.2e-145 520.0 1105 38.6
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.0e-143 515.4 1117 40.4
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.0e-138 498.8 1096 38.6
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.2e-136 491.9 1100 37.8
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 1.2e-136 491.9 874 43.6
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.8e-135 488.0 1115 38.0
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.2e-134 485.3 1134 38.7
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.7e-131 474.2 1100 38.9
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.7e-131 474.2 1093 38.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 2.7e-131 474.2 1111 38.0
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.3e-130 471.1 1109 38.1
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.5e-130 469.5 1100 38.7
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 6.5e-130 469.5 1110 38.6
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 1.5e-129 468.4 1114 38.1
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 2.5e-129 467.6 1031 38.5
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.5e-129 467.6 1118 38.2
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.2e-129 466.8 1142 38.5
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 7.2e-129 466.1 1097 34.4
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 9.5e-129 465.7 1107 37.9
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 2.1e-128 464.5 1115 39.2
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 2.1e-128 464.5 887 43.2
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 3.0e-127 460.7 1109 37.1
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.0e-127 460.3 1095 38.0
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 1.5e-126 458.4 1089 38.1
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 1.5e-126 458.4 863 41.5
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 3.4e-126 457.2 868 41.8
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.4e-124 451.8 793 43.9
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.2e-123 448.7 924 41.7
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 5.9e-123 446.4 1108 37.7
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 2.3e-122 444.5 1102 37.7
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.9e-121 441.4 1104 37.4
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 9.5e-121 439.1 1105 35.9
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 8.9e-119 432.6 1103 36.7
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.4e-116 425.2 1117 33.8
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 2.4e-116 424.5 1116 35.9
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 5.4e-116 423.3 1117 34.8
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 5.4e-116 423.3 1088 36.9
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 5.4e-116 423.3 1110 34.5
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 7.0e-116 422.9 830 42.3
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 2.7e-115 421.0 1080 38.3
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 1.0e-114 419.1 1111 38.3
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.5e-113 414.5 1132 35.6
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 2.8e-112 411.0 1082 37.4
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 1.1e-111 409.1 1106 36.1
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 1.4e-111 408.7 1107 35.0
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.8e-111 408.3 1121 36.2
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 5.2e-111 406.8 806 39.5
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 9.2e-108 396.0 1109 34.6
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 1.6e-107 395.2 1126 35.6
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 1.6e-107 395.2 834 39.2
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.7e-107 394.4 828 38.9
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 3.5e-107 394.0 816 41.9
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.3e-106 392.1 828 40.0
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.3e-106 392.1 1102 38.6
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 3.0e-106 391.0 823 42.2
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 2.8e-104 384.4 1111 32.8
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 4.7e-104 383.6 1066 35.5
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 1.4e-103 382.1 1122 35.7
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 2.0e-102 378.3 880 37.5
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 2.6e-102 377.9 870 37.6
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 9.9e-102 375.9 755 43.4
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 2.2e-101 374.8 1118 34.6
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 3.9e-98 364.0 1028 36.4
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.1e-97 362.5 1087 33.9
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 7.3e-97 359.8 1094 32.4
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.2e-96 359.0 884 37.2
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.4e-95 354.8 564 43.1
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.1e-95 354.4 555 43.6
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.3e-93 349.0 1123 36.0
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 6.4e-93 346.7 1144 35.0
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.6e-91 342.0 1179 32.1
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 2.1e-91 341.7 1096 32.3
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.3e-90 339.0 1097 34.5
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 1.8e-87 328.6 1079 31.6
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 4.0e-87 327.4 970 32.2
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 5.8e-86 323.6 478 47.3
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.3e-85 322.4 1085 34.0
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.1e-81 309.3 1092 32.6
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 1.4e-79 302.4 1114 31.4
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 2.4e-79 301.6 1099 32.4
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 2.0e-78 298.5 779 34.3
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.3e-77 295.8 776 33.2
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 8.4e-77 293.1 1087 32.7
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 2.4e-76 291.6 1115 30.5
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 3.2e-76 291.2 798 34.8
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 6.7e-74 283.5 797 35.5
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.9e-73 282.0 812 34.1
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 1.6e-72 278.9 1219 30.7
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 1.8e-71 275.4 1140 28.5
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 9.0e-71 273.1 691 37.3
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 3.4e-70 271.2 1072 30.9
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.4e-68 265.8 1068 30.5
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 9.3e-68 263.1 1091 28.9
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 1.5e-65 255.8 1016 30.4
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.6e-64 252.3 1109 29.1
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 1.6e-59 235.7 1078 30.4
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 1.1e-57 229.6 152 77.0
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 2.9e-53 214.9 251 53.4
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 5.0e-53 214.2 742 32.5
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 4.8e-48 197.6 1064 28.9
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 6.1e-43 180.6 154 64.3
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.7e-35 155.2 299 48.5
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 6.1e-35 154.1 97 83.5
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.3e-34 152.1 157 56.1
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 3.1e-31 141.7 176 50.6
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.5e-28 132.9 182 47.3
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.5e-28 132.1 102 70.6
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 6.1e-27 127.5 161 48.4
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 2.3e-26 125.6 143 49.0
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 1.0e-21 110.2 78 67.9
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.0e-21 110.2 389 37.3
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 7.2e-20 104.0 148 45.3
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.4e-15 89.7 88 63.6
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 2.7e-14 85.5 371 26.7
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 4.7e-11 74.7 60 68.3
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 1.8e-10 72.8 187 29.4
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 4.0e-10 71.6 60 66.7
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.4e-07 62.4 86 52.3
Lsat_1_v5_gn_1_72981 Lactuca sativa HOM05D004596 ORTHO05D005853 2.7e-06 58.9 43 62.8


User provided reference genes

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