Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.0e-57 224.9 113 100.0
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.7e-28 129.4 99 70.7
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 2.6e-24 115.5 112 57.1
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 3.7e-23 111.7 109 56.0
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.8e-22 109.4 98 58.2
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 4.6e-21 104.8 106 51.9
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 6.6e-20 100.9 113 54.0
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.5e-19 99.8 99 53.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.5e-19 99.8 101 53.5
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 1.9e-19 99.4 114 50.9
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.5e-19 99.0 109 53.2
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 3.3e-19 98.6 110 50.0
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 4.3e-19 98.2 100 56.0
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 4.3e-19 98.2 119 50.4
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 5.6e-19 97.8 102 54.9
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 5.6e-19 97.8 102 54.9
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.3e-19 97.4 103 50.5
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.2e-18 96.7 105 49.5
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-18 96.7 105 49.5
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.2e-18 96.7 105 49.5
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.6e-18 96.3 99 51.5
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.6e-18 96.3 101 51.5
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.8e-18 95.5 98 56.1
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 3.6e-18 95.1 122 45.1
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 4.7e-18 94.7 101 51.5
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 8.0e-18 94.0 106 50.0
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.1e-17 93.6 106 51.9
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.1e-17 93.6 103 49.5
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.1e-17 93.6 94 54.3
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.4e-17 93.2 95 54.7
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.4e-17 93.2 102 51.0
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.8e-17 92.8 103 52.4
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.8e-17 92.8 102 50.0
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.8e-17 92.8 105 54.3
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.3e-17 92.4 103 52.4
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 4.0e-17 91.7 103 45.6
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 4.0e-17 91.7 102 48.0
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 4.0e-17 91.7 103 53.4
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 5.2e-17 91.3 115 47.8
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 6.8e-17 90.9 102 50.0
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 6.8e-17 90.9 98 51.0
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.2e-16 90.1 100 50.0
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.2e-16 90.1 98 52.0
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 2.0e-16 89.4 110 47.3
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.0e-16 89.4 98 50.0
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 2.6e-16 89.0 98 56.1
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.4e-16 88.6 100 53.0
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 7.5e-16 87.4 91 58.2
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 1.3e-15 86.7 118 46.6
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 1.3e-15 86.7 110 46.4
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.9e-15 85.5 110 46.4
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.9e-15 85.5 110 46.4
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.9e-15 85.5 110 46.4
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 3.7e-15 85.1 115 51.3
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 6.4e-15 84.3 99 52.5
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.1e-14 83.6 105 47.6
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.9e-14 82.8 103 53.4
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.9e-14 82.8 117 47.9
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.4e-14 82.4 103 49.5
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.4e-14 82.4 119 45.4
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.4e-14 82.4 117 47.9
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 7.0e-14 80.9 94 50.0
CSS0000743 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 9.2e-14 80.5 67 64.2
CSS0018861 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 9.2e-14 80.5 67 64.2
CSS0040409 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 9.2e-14 80.5 67 64.2
CSS0049445 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 9.2e-14 80.5 67 64.2
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 9.2e-14 80.5 53 73.6
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 9.2e-14 80.5 95 50.5
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.2e-13 80.1 101 47.5
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-13 80.1 78 55.1
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.6e-13 79.7 78 55.1
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.6e-13 79.7 78 55.1
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.6e-13 79.7 112 46.4
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 2.0e-13 79.3 101 46.5
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 4.6e-13 78.2 141 39.7
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.0e-13 77.8 108 47.2
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.0e-13 77.8 108 47.2
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 6.0e-13 77.8 96 50.0
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 6.0e-13 77.8 96 50.0
CSS0048589 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 7.8e-13 77.4 68 63.2
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.0e-12 77.0 146 34.2
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.0e-12 77.0 108 44.4
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.0e-12 77.0 107 44.9
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 1.3e-12 76.6 106 44.3
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.3e-12 76.6 102 45.1
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 1.3e-12 76.6 102 45.1
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.3e-12 75.9 96 49.0
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 2.3e-12 75.9 108 41.7
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.0e-12 75.5 114 42.1
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.9e-12 75.1 111 43.2
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 5.0e-12 74.7 110 43.6
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 5.0e-12 74.7 110 41.8
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 5.0e-12 74.7 103 44.7
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 5.0e-12 74.7 130 38.5
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 5.0e-12 74.7 103 49.5
CSS0015170 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 6.6e-12 74.3 68 61.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 6.6e-12 74.3 106 43.4
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 6.6e-12 74.3 104 43.3
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.1e-11 73.6 80 53.8
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.5e-11 73.2 64 59.4
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.5e-11 73.2 118 39.0
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.9e-11 72.8 112 42.9
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 1.9e-11 72.8 132 37.1
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 2.5e-11 72.4 101 47.5
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 3.3e-11 72.0 57 64.9
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 3.3e-11 72.0 62 58.1
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 3.3e-11 72.0 62 53.2
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.2e-10 70.1 108 45.4
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.2e-10 70.1 55 58.2
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.6e-10 69.7 95 44.2
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.6e-10 69.7 112 40.2
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.1e-10 69.3 81 46.9
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 2.8e-10 68.9 104 43.3
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 2.8e-10 68.9 127 34.6
CSS0026411 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 3.6e-10 68.6 68 52.9
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 4.7e-10 68.2 103 44.7
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 6.2e-10 67.8 107 43.9
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.1e-10 67.4 69 52.2
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 8.1e-10 67.4 65 55.4
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 8.1e-10 67.4 119 34.5
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.1e-09 67.0 118 36.4
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.1e-09 67.0 104 41.3
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.4e-09 66.6 74 48.6
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.8e-09 66.2 57 57.9
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.0e-09 65.1 55 60.0
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 6.8e-09 64.3 64 56.2
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 8.9e-09 63.9 81 48.1
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 1.2e-08 63.5 53 58.5
BcaNung04931 Brassica carinata HOM05D008699 ORTHO05D012283 2.0e-08 62.8 121 41.3
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 2.0e-08 62.8 88 43.2
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 4.4e-08 61.6 98 42.9
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.4e-08 61.6 69 49.3
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 4.4e-08 61.6 64 45.3
BcaB04g21232 Brassica carinata HOM05D008699 ORTHO05D012283 5.8e-08 61.2 118 40.7
BcaNung04932 Brassica carinata HOM05D008699 ORTHO05D012283 5.8e-08 61.2 118 40.7
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 5.8e-08 61.2 64 53.1
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 7.5e-08 60.8 143 36.4
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.5e-08 60.8 74 51.4
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 7.5e-08 60.8 64 50.0
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 7.5e-08 60.8 64 48.4
BolC1t05388H Brassica oleracea HOM05D008699 ORTHO05D012283 9.9e-08 60.5 122 38.5
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 9.9e-08 60.5 78 46.2
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 9.9e-08 60.5 55 52.7
BraA01t04245Z Brassica rapa HOM05D008699 ORTHO05D012283 1.3e-07 60.1 121 38.0
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 1.3e-07 60.1 64 51.6
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.3e-07 60.1 64 51.6
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 1.3e-07 60.1 57 50.9
BcaC05g29454 Brassica carinata HOM05D008699 ORTHO05D012283 2.2e-07 59.3 118 39.0
A01p41700 Brassica napus HOM05D008699 ORTHO05D012283 2.2e-07 59.3 122 37.7
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 2.2e-07 59.3 63 49.2
A05p38650 Brassica napus HOM05D008699 ORTHO05D012283 2.9e-07 58.9 118 39.0
BraA05t22656Z Brassica rapa HOM05D008699 ORTHO05D012283 2.9e-07 58.9 118 39.0
C05p57520 Brassica napus HOM05D008699 ORTHO05D012283 3.7e-07 58.5 121 40.5
BolC5t34409H Brassica oleracea HOM05D008699 ORTHO05D012283 3.7e-07 58.5 121 40.5
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 4.9e-07 58.2 111 36.9
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.9e-07 58.2 57 56.1
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 4.9e-07 58.2 58 46.6
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 8.3e-07 57.4 72 48.6
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 1.1e-06 57.0 62 51.6
AT3G10525 Arabidopsis thaliana HOM05D008699 ORTHO05D012283 1.4e-06 56.6 118 37.3
BcaB04g18593 Brassica carinata HOM05D008699 ORTHO05D012283 1.4e-06 56.6 117 34.2
A03p36610 Brassica napus HOM05D008699 ORTHO05D012283 1.9e-06 56.2 114 34.2
BraA03t12826Z Brassica rapa HOM05D008699 ORTHO05D012283 1.9e-06 56.2 114 34.2
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.4e-06 55.8 64 50.0
AL3G21910 Arabidopsis lyrata HOM05D008699 ORTHO05D012283 3.2e-06 55.5 118 37.3
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 4.1e-06 55.1 70 48.6
BcaC01g04175 Brassica carinata HOM05D008699 ORTHO05D012283 5.4e-06 54.7 118 34.7
C03p44240 Brassica napus HOM05D008699 ORTHO05D012283 5.4e-06 54.7 118 34.7
BolC3t16694H Brassica oleracea HOM05D008699 ORTHO05D012283 5.4e-06 54.7 118 34.7
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 5.4e-06 54.7 73 41.1
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 7.1e-06 54.3 80 40.0


User provided reference genes

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