Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.6e-91 339.3 168 100.0
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 9.1e-50 200.7 149 72.5
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 4.5e-49 198.4 149 71.1
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.1e-47 193.7 148 69.6
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.6e-46 189.9 148 69.6
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 6.1e-38 161.4 148 60.8
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 1.5e-31 140.2 144 52.8
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.5e-31 139.4 138 58.7
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 1.2e-25 120.6 152 47.4
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.6e-25 120.2 142 47.2
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 1.0e-24 117.5 145 45.5
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 1.3e-24 117.1 143 49.0
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 1.7e-24 116.7 141 44.7
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 2.9e-24 115.9 140 45.0
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 4.2e-23 112.1 143 43.4
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 5.5e-23 111.7 138 43.5
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 7.2e-23 111.3 143 42.7
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.2e-22 110.5 138 42.8
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 2.7e-22 109.4 138 44.2
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 8.0e-22 107.8 143 42.0
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 1.0e-21 107.5 150 44.0
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 1.8e-21 106.7 143 42.7
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 3.0e-21 105.9 134 44.0
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 4.0e-21 105.5 154 42.2
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 5.2e-21 105.1 138 45.7
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 5.2e-21 105.1 140 45.7
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 1.5e-20 103.6 145 42.1
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.6e-20 102.8 149 43.0
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 7.5e-20 101.3 149 45.0
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 9.8e-20 100.9 143 44.1
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 1.3e-19 100.5 120 47.5
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 1.7e-19 100.1 131 44.3
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 2.2e-19 99.8 137 44.5
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 2.8e-19 99.4 143 42.7
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 3.7e-19 99.0 145 37.2
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 4.9e-19 98.6 63 74.6
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 6.3e-19 98.2 143 43.4
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 1.4e-18 97.1 138 44.2
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 1.4e-18 97.1 148 41.2
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 1.8e-18 96.7 143 42.7
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 1.8e-18 96.7 141 44.7
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 2.4e-18 96.3 142 41.5
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 2.4e-18 96.3 155 39.4
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 7.0e-18 94.7 143 40.6
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 7.0e-18 94.7 141 45.4
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 7.0e-18 94.7 143 39.9
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 9.2e-18 94.4 147 39.5
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.2e-17 94.0 109 45.0
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.7e-17 92.8 142 38.7
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 1.0e-16 90.9 140 38.6
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 1.0e-16 90.9 70 64.3
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 1.3e-16 90.5 146 39.0
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.3e-16 89.7 142 38.0
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 2.9e-16 89.4 152 38.2
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 3.8e-16 89.0 146 39.0
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 8.6e-16 87.8 108 45.4
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.1e-15 87.4 147 36.7
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 1.5e-15 87.0 154 39.6
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 1.9e-15 86.7 147 40.1
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 3.3e-15 85.9 150 39.3
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 4.3e-15 85.5 64 68.8
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 5.6e-15 85.1 139 37.4
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 5.6e-15 85.1 116 42.2
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 9.5e-15 84.3 116 42.2
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 9.5e-15 84.3 110 44.5
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 1.2e-14 84.0 141 41.1
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 1.6e-14 83.6 142 35.2
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 2.8e-14 82.8 141 37.6
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 2.8e-14 82.8 138 37.7
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 3.6e-14 82.4 139 37.4
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 6.1e-14 81.6 146 39.0
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 6.1e-14 81.6 146 38.4
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 6.1e-14 81.6 135 40.0
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 8.0e-14 81.3 146 38.4
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 8.0e-14 81.3 140 37.1
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 8.0e-14 81.3 153 36.6
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 1.4e-13 80.5 70 51.4
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 2.3e-13 79.7 138 38.4
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 3.0e-13 79.3 132 39.4
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 4.0e-13 79.0 142 34.5
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 8.9e-13 77.8 57 63.2
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 2.0e-12 76.6 99 47.5
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 2.6e-12 76.3 114 41.2
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 3.4e-12 75.9 73 49.3
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 5.7e-12 75.1 146 35.6
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 5.7e-12 75.1 162 30.9
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 9.8e-12 74.3 67 56.7
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 1.3e-11 73.9 73 47.9
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 2.2e-11 73.2 73 47.9
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 2.2e-11 73.2 73 47.9
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.9e-11 72.8 35 91.4
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.9e-11 72.8 35 91.4
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.9e-11 72.8 35 91.4
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 2.4e-10 69.7 58 58.6
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 5.4e-10 68.6 82 52.4
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 7.0e-10 68.2 61 59.0
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 1.2e-09 67.4 67 52.2
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 2.7e-09 66.2 82 51.2
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.3e-07 59.3 35 74.3
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 5.6e-07 58.5 111 34.2
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 5.6e-07 58.5 113 37.2
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 2.1e-06 56.6 51 49.0
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 2.8e-06 56.2 35 71.4
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.6e-06 55.8 35 68.6
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 4.7e-06 55.5 67 47.8


User provided reference genes

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