Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.2e-79 299.7 144 100.0
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 4.6e-50 201.4 147 66.0
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 8.6e-41 170.6 146 63.0
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.8e-38 162.9 146 61.0
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 1.4e-35 153.3 147 52.4
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 7.1e-35 151.0 148 57.4
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 1.6e-34 149.8 149 53.7
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 3.5e-34 148.7 148 52.0
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.0e-33 147.1 149 53.7
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 3.0e-33 145.6 148 50.7
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 3.0e-33 145.6 149 53.7
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 3.9e-33 145.2 149 53.0
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 8.6e-33 144.1 147 50.3
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 1.1e-32 143.7 145 49.0
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 1.6e-31 139.8 148 51.4
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 6.2e-31 137.9 145 48.3
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 8.1e-31 137.5 147 50.3
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.4e-30 136.7 155 46.5
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 1.8e-30 136.3 144 52.1
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 1.8e-30 136.3 144 48.6
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 5.2e-30 134.8 155 52.3
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.5e-29 133.3 144 50.7
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 2.0e-29 132.9 146 53.4
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.6e-29 132.5 155 51.0
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.4e-29 132.1 146 52.7
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 3.4e-29 132.1 146 52.7
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 9.9e-29 130.6 146 51.4
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 1.7e-28 129.8 148 47.3
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.8e-28 128.6 146 51.4
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 8.4e-28 127.5 149 47.0
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 8.4e-28 127.5 114 57.0
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.4e-27 125.9 158 46.8
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 2.4e-27 125.9 148 47.3
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.1e-27 125.2 146 50.7
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 1.6e-26 123.2 141 46.1
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 2.7e-26 122.5 158 46.2
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 4.6e-26 121.7 147 51.0
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 4.6e-26 121.7 147 44.9
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 6.0e-26 121.3 160 43.8
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 7.8e-26 120.9 147 44.9
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.7e-25 119.8 160 45.6
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 1.7e-25 119.8 105 56.2
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 1.5e-24 116.7 148 46.6
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 2.5e-24 115.9 153 43.8
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 5.6e-24 114.8 147 41.5
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 1.2e-23 113.6 146 42.5
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.5e-21 106.7 147 48.3
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 4.4e-21 105.1 162 37.0
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 5.8e-21 104.8 152 43.4
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 1.3e-20 103.6 149 45.6
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 1.7e-20 103.2 144 45.1
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 8.4e-20 100.9 162 43.2
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 1.9e-19 99.8 161 39.8
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 4.2e-19 98.6 124 41.9
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 9.3e-19 97.4 148 38.5
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 9.3e-19 97.4 150 43.3
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 3.5e-18 95.5 155 41.3
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 3.5e-18 95.5 105 55.2
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.0e-17 94.0 139 37.4
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 1.3e-17 93.6 144 40.3
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 2.3e-17 92.8 155 42.6
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 3.9e-17 92.0 157 42.0
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 3.9e-17 92.0 154 40.9
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 3.9e-17 92.0 162 38.9
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 5.1e-17 91.7 152 39.5
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 8.7e-17 90.9 145 40.0
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 1.1e-16 90.5 156 35.9
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 1.1e-16 90.5 150 40.0
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 1.5e-16 90.1 153 37.9
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.5e-16 90.1 61 67.2
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.9e-16 89.7 112 46.4
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.3e-16 89.0 106 45.3
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 7.3e-16 87.8 153 36.6
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 1.6e-15 86.7 153 35.3
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 2.8e-15 85.9 148 38.5
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.1e-14 84.0 62 66.1
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.1e-14 84.0 62 66.1
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.1e-14 84.0 62 66.1
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 3.1e-14 82.4 149 38.3
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 3.1e-14 82.4 146 39.0
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 3.1e-14 82.4 154 40.3
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 3.1e-14 82.4 154 36.4
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 5.3e-14 81.6 149 37.6
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 9.0e-14 80.9 144 36.8
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 1.5e-13 80.1 159 38.4
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 3.4e-13 79.0 165 37.6
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 3.4e-13 79.0 157 38.9
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 5.8e-13 78.2 160 32.5
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.3e-12 77.0 121 34.7
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 1.3e-12 77.0 179 34.1
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 2.2e-12 76.3 126 36.5
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 6.4e-12 74.7 133 34.6
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.4e-11 73.6 164 29.9
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 1.4e-11 73.6 135 34.1
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 1.2e-10 70.5 136 34.6
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 4.6e-10 68.6 159 35.8
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 4.6e-10 68.6 156 34.0
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 1.3e-09 67.0 65 55.4
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 1.8e-09 66.6 65 52.3
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 8.7e-09 64.3 54 50.0
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 8.7e-09 64.3 36 69.4
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 1.1e-06 57.4 112 33.0
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 1.8e-06 56.6 83 36.1


User provided reference genes

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