Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0169400 Rhododendron simsii HOM05D001978 ORTHO05D003036 2.3e-63 245.4 119 100.0
vmacro13704 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 6.7e-15 84.3 66 68.2
CSS0022031 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 7.4e-14 80.9 66 62.1
Cpa.g.sc125.58 Carica papaya HOM05D001978 ORTHO05D003036 7.4e-14 80.9 66 62.1
TAR636G2630 Trochodendron aralioides HOM05D001978 ORTHO05D003036 7.4e-14 80.9 66 63.6
Rhsim07G0059400 Rhododendron simsii HOM05D001978 ORTHO05D003036 1.3e-13 80.1 66 60.6
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 2.2e-13 79.3 46 78.3
Actinidia21535 Actinidia chinensis HOM05D001978 ORTHO05D003036 2.8e-13 79.0 66 60.6
Carub.0005s3007 Capsella rubella HOM05D001978 ORTHO05D003036 2.8e-13 79.0 66 62.1
MBI13_g11939_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 2.8e-13 79.0 66 62.1
Sed0016255 Sechium edule HOM05D001978 ORTHO05D003036 3.7e-13 78.6 66 62.1
CSS0034960 Camellia sinensis var. sinensis HOM05D001978 ORTHO05D003036 6.3e-13 77.8 66 60.6
CiPaw.14G004000 Carya illinoinensis HOM05D001978 ORTHO05D003036 6.3e-13 77.8 68 63.2
Rhsim01G0124800 Rhododendron simsii HOM05D001978 ORTHO05D003036 6.3e-13 77.8 68 63.2
Hund16631 Selenicereus undatus HOM05D001978 ORTHO05D003036 6.3e-13 77.8 64 59.4
TAR633G1125 Trochodendron aralioides HOM05D001978 ORTHO05D003036 6.3e-13 77.8 66 60.6
Ciclev10030570m.g Citrus clementina HOM05D001978 ORTHO05D003036 8.2e-13 77.4 66 62.1
CsaV3_3G031890 Cucumis sativus L. HOM05D001978 ORTHO05D003036 8.2e-13 77.4 66 60.6
Gorai.007G083600 Gossypium raimondii HOM05D001978 ORTHO05D003036 8.2e-13 77.4 66 62.1
ClCG10G012130 Citrullus lanatus HOM05D001978 ORTHO05D003036 1.1e-12 77.0 66 60.6
COL.COLO4_12328 Corchorus olitorius HOM05D001978 ORTHO05D003036 1.1e-12 77.0 66 62.1
MELO3C024002.2 Cucumis melo HOM05D001978 ORTHO05D003036 1.1e-12 77.0 66 60.6
Gohir.A08G141300 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-12 77.0 66 59.1
Gohir.D08G162400 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.1e-12 77.0 66 59.1
Gorai.004G168700 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.1e-12 77.0 66 59.1
TAR633G0096 Trochodendron aralioides HOM05D001978 ORTHO05D003036 1.1e-12 77.0 66 62.1
Atru.chr11.2543 Acer truncatum HOM05D001978 ORTHO05D003036 1.4e-12 76.6 66 59.1
Dinv43400 Davidia involucrata HOM05D001978 ORTHO05D003036 1.4e-12 76.6 66 60.6
Duzib138G1653 Durio zibethinus HOM05D001978 ORTHO05D003036 1.8e-12 76.3 66 60.6
Gohir.D11G078201 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.8e-12 76.3 66 60.6
TWI09G1049 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.8e-12 76.3 64 62.5
TWI53G0392 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 1.8e-12 76.3 66 60.6
AL5G46320 Arabidopsis lyrata HOM05D001978 ORTHO05D003036 2.4e-12 75.9 66 59.1
GSVIVG01001441001 Vitis vinifera HOM05D001978 ORTHO05D003036 2.4e-12 75.9 66 60.6
Glyma.09G226400 Glycine max HOM05D001978 ORTHO05D003036 3.1e-12 75.5 66 57.6
Lalb_Chr19g0140221 Lupinus albus HOM05D001978 ORTHO05D003036 3.1e-12 75.5 66 59.1
TWI73G0465 Tripterygium wilfordii HOM05D001978 ORTHO05D003036 3.1e-12 75.5 66 62.1
TAR369G0424 Trochodendron aralioides HOM05D001978 ORTHO05D003036 3.1e-12 75.5 66 57.6
Manes.10G135100 Manihot esculenta HOM05D001978 ORTHO05D003036 4.1e-12 75.1 66 60.6
Actinidia06286 Actinidia chinensis HOM05D001978 ORTHO05D003036 5.3e-12 74.7 67 62.7
ATR0057G085 Amborella trichopoda HOM05D001978 ORTHO05D003036 5.3e-12 74.7 66 57.6
Thhalv10005758m.g Eutrema salsugineum HOM05D001978 ORTHO05D003036 5.3e-12 74.7 66 59.1
Lj7C575G6 Lonicera japonica HOM05D001978 ORTHO05D003036 5.3e-12 74.7 66 59.1
Potri.001G260900 Populus trichocarpa HOM05D001978 ORTHO05D003036 5.3e-12 74.7 66 60.6
QL04p010499 Quercus lobata HOM05D001978 ORTHO05D003036 5.3e-12 74.7 66 56.1
Sp5g00090 Schrenkiella parvula HOM05D001978 ORTHO05D003036 5.3e-12 74.7 66 59.1
Sc11g0009020 Simmondsia chinensis HOM05D001978 ORTHO05D003036 5.3e-12 74.7 64 57.8
AT3G63460 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 6.9e-12 74.3 66 57.6
Eucgr.G03281 Eucalyptus grandis HOM05D001978 ORTHO05D003036 6.9e-12 74.3 66 59.1
Hma1.2p1_0685F.1_g203310 Hydrangea macrophylla HOM05D001978 ORTHO05D003036 6.9e-12 74.3 66 59.1
MBI19_g16674_MAGBIO Magnolia biondii HOM05D001978 ORTHO05D003036 6.9e-12 74.3 66 57.6
Nn7g36348 Nelumbo nucifera HOM05D001978 ORTHO05D003036 6.9e-12 74.3 66 56.1
Psat7g158440 Pisum sativum HOM05D001978 ORTHO05D003036 6.9e-12 74.3 66 56.1
Sabra09G0040500 Salix brachista HOM05D001978 ORTHO05D003036 6.9e-12 74.3 66 60.6
HPP92_001386 Vanilla planifolia HOM05D001978 ORTHO05D003036 6.9e-12 74.3 64 59.4
Ah.16g100700 Amaranthus hybridus HOM05D001978 ORTHO05D003036 9.1e-12 73.9 64 54.7
Aqoxy2G04178 Aquilegia oxysepala HOM05D001978 ORTHO05D003036 9.1e-12 73.9 66 57.6
CARHR291510 Cardamine hirsuta HOM05D001978 ORTHO05D003036 9.1e-12 73.9 66 57.6
Duzib133G0356 Durio zibethinus HOM05D001978 ORTHO05D003036 9.1e-12 73.9 66 59.1
Potri.009G055400 Populus trichocarpa HOM05D001978 ORTHO05D003036 9.1e-12 73.9 66 60.6
Sed0014499 Sechium edule HOM05D001978 ORTHO05D003036 9.1e-12 73.9 66 57.6
Thecc.01G404200 Theobroma cacao HOM05D001978 ORTHO05D003036 9.1e-12 73.9 66 59.1
Lsat_1_v5_gn_4_32040 Lactuca sativa HOM05D001978 ORTHO05D003036 1.2e-11 73.6 68 60.3
Lalb_Chr01g0000521 Lupinus albus HOM05D001978 ORTHO05D003036 1.2e-11 73.6 66 56.1
Phvul.011G010400 Phaseolus vulgaris HOM05D001978 ORTHO05D003036 1.2e-11 73.6 66 54.5
Sabra16G0159500 Salix brachista HOM05D001978 ORTHO05D003036 1.2e-11 73.6 66 59.1
EL10Ac2g04382 Beta vulgaris HOM05D001978 ORTHO05D003036 1.5e-11 73.2 66 51.5
BcaC08g45262 Brassica carinata HOM05D001978 ORTHO05D003036 1.5e-11 73.2 64 57.8
A07p26260 Brassica napus HOM05D001978 ORTHO05D003036 1.5e-11 73.2 64 57.8
C06p28640 Brassica napus HOM05D001978 ORTHO05D003036 1.5e-11 73.2 64 57.8
BolC6t38032H Brassica oleracea HOM05D001978 ORTHO05D003036 1.5e-11 73.2 64 57.8
BraA07t30269Z Brassica rapa HOM05D001978 ORTHO05D003036 1.5e-11 73.2 64 57.8
CDE02G0774 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 1.5e-11 73.2 66 57.6
CDE09G0202 Ceratophyllum demersum HOM05D001978 ORTHO05D003036 1.5e-11 73.2 66 57.6
Gohir.D08G064900 Gossypium hirsutum HOM05D001978 ORTHO05D003036 1.5e-11 73.2 66 57.6
Gorai.004G067200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.5e-11 73.2 66 57.6
TPR.G8347 Trifolium pratense HOM05D001978 ORTHO05D003036 1.5e-11 73.2 66 56.1
VMungo1127G0961 Vigna mungo HOM05D001978 ORTHO05D003036 1.5e-11 73.2 66 56.1
AUR62009426 Chenopodium quinoa HOM05D001978 ORTHO05D003036 2.0e-11 72.8 64 57.8
Duzib268G1826 Durio zibethinus HOM05D001978 ORTHO05D003036 2.0e-11 72.8 66 56.1
Gohir.D12G103000 Gossypium hirsutum HOM05D001978 ORTHO05D003036 2.0e-11 72.8 66 59.1
Lj3g0007867 Lotus japonicus HOM05D001978 ORTHO05D003036 2.0e-11 72.8 66 57.6
Ah.10g038540 Amaranthus hybridus HOM05D001978 ORTHO05D003036 2.6e-11 72.4 64 53.1
BraA09t40921Z Brassica rapa HOM05D001978 ORTHO05D003036 2.6e-11 72.4 66 57.6
ECA234G3788 Erigeron canadensis HOM05D001978 ORTHO05D003036 2.6e-11 72.4 67 56.7
Medtr4g045577 Medicago truncatula HOM05D001978 ORTHO05D003036 2.6e-11 72.4 66 53.0
arahy.Tifrunner.gnm1.ann1.18AW2L Arachis hypogaea HOM05D001978 ORTHO05D003036 3.4e-11 72.0 66 56.1
arahy.Tifrunner.gnm1.ann1.T8W0FC Arachis hypogaea HOM05D001978 ORTHO05D003036 3.4e-11 72.0 66 56.1
Ca_26319_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 3.4e-11 72.0 66 54.5
Ca_29948_v3 Cicer arietinum L. HOM05D001978 ORTHO05D003036 3.4e-11 72.0 66 54.5
FvH4_7g01850 Fragaria vesca HOM05D001978 ORTHO05D003036 3.4e-11 72.0 68 58.8
FAN03G2968 Fragaria x ananassa HOM05D001978 ORTHO05D003036 3.4e-11 72.0 68 58.8
FAN06G2210 Fragaria x ananassa HOM05D001978 ORTHO05D003036 3.4e-11 72.0 68 58.8
FAN10G1732 Fragaria x ananassa HOM05D001978 ORTHO05D003036 3.4e-11 72.0 68 58.8
Gohir.A08G055600 Gossypium hirsutum HOM05D001978 ORTHO05D003036 3.4e-11 72.0 66 56.1
MD07G1024900 Malus domestica HOM05D001978 ORTHO05D003036 3.4e-11 72.0 67 59.7
Prupe.2G024600 Prunus persica HOM05D001978 ORTHO05D003036 3.4e-11 72.0 67 58.2
RcHm_v2.0_Chr1g0318481 Rosa chinensis HOM05D001978 ORTHO05D003036 3.4e-11 72.0 68 58.8
Sc14g0004930 Simmondsia chinensis HOM05D001978 ORTHO05D003036 3.4e-11 72.0 64 54.7
BcaC07g40813 Brassica carinata HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 57.6
C04p29860 Brassica napus HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 54.5
BolC4t24517H Brassica oleracea HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 54.5
BolC8t51381H Brassica oleracea HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 57.6
BraA09t40920Z Brassica rapa HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 57.6
Cfa022633 Carpinus fangiana HOM05D001978 ORTHO05D003036 4.5e-11 71.6 68 55.9
Haze_03128 Corylus avellana HOM05D001978 ORTHO05D003036 4.5e-11 71.6 68 55.9
Haze_03129 Corylus avellana HOM05D001978 ORTHO05D003036 4.5e-11 71.6 68 55.9
Manes.07G011900 Manihot esculenta HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 57.6
PGR031G1837 Punica granatum HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 54.5
THA.LOC104823030 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 4.5e-11 71.6 66 54.5
FAN01G0983 Fragaria x ananassa HOM05D001978 ORTHO05D003036 5.9e-11 71.2 68 58.8
BcaB02g08058 Brassica carinata HOM05D001978 ORTHO05D003036 7.7e-11 70.9 66 54.5
CANSAT80G0138 Cannabis sativa HOM05D001978 ORTHO05D003036 7.7e-11 70.9 67 59.7
MD02G1300000 Malus domestica HOM05D001978 ORTHO05D003036 7.7e-11 70.9 67 58.2
SGA_v2.0_scaffold5G02944 Striga asiatica HOM05D001978 ORTHO05D003036 1.0e-10 70.5 66 53.0
THA.LOC104801971 Tarenaya hassleriana HOM05D001978 ORTHO05D003036 1.0e-10 70.5 66 54.5
A09p55130 Brassica napus HOM05D001978 ORTHO05D003036 1.3e-10 70.1 66 56.1
Gorai.008G112200 Gossypium raimondii HOM05D001978 ORTHO05D003036 1.3e-10 70.1 66 57.6
Dinv02869 Davidia involucrata HOM05D001978 ORTHO05D003036 1.7e-10 69.7 66 57.6
Dinv15066 Davidia involucrata HOM05D001978 ORTHO05D003036 1.7e-10 69.7 66 57.6
Dinv31781 Davidia involucrata HOM05D001978 ORTHO05D003036 1.7e-10 69.7 66 57.6
HanXRQChr16g0524831 Helianthus annuus HOM05D001978 ORTHO05D003036 2.2e-10 69.3 68 57.4
Lalb_Chr03g0024131 Lupinus albus HOM05D001978 ORTHO05D003036 2.2e-10 69.3 66 51.5
Aa31LG10G17320 Aethionema arabicum HOM05D001978 ORTHO05D003036 2.9e-10 68.9 66 56.1
Cc00_g06050 Coffea canephora HOM05D001978 ORTHO05D003036 3.8e-10 68.6 66 53.0
Dinv37732 Davidia involucrata HOM05D001978 ORTHO05D003036 3.8e-10 68.6 66 57.6
Nn2g15171 Nelumbo nucifera HOM05D001978 ORTHO05D003036 5.0e-10 68.2 66 53.0
SGA_v2.0_scaffold119G32768 Striga asiatica HOM05D001978 ORTHO05D003036 5.0e-10 68.2 66 54.5
DCAR_031813 Daucus carota HOM05D001978 ORTHO05D003036 6.5e-10 67.8 64 51.6
HanXRQChr06g0183381 Helianthus annuus HOM05D001978 ORTHO05D003036 6.5e-10 67.8 67 53.7
DCAR_022370 Daucus carota HOM05D001978 ORTHO05D003036 8.5e-10 67.4 64 53.1
ECA236G3334 Erigeron canadensis HOM05D001978 ORTHO05D003036 8.5e-10 67.4 67 53.7
Lj9A642T48 Lonicera japonica HOM05D001978 ORTHO05D003036 8.5e-10 67.4 66 53.0
Oeu014599.1 Olea europaea HOM05D001978 ORTHO05D003036 1.1e-09 67.0 66 53.0
SGA_v2.0_scaffold4G02473 Striga asiatica HOM05D001978 ORTHO05D003036 1.1e-09 67.0 66 54.5
Oeu006547.2 Olea europaea HOM05D001978 ORTHO05D003036 1.9e-09 66.2 66 53.0
SalBow6G2677 Salvia bowleyana HOM05D001978 ORTHO05D003036 2.5e-09 65.9 66 51.5
SalBow6G7160 Salvia bowleyana HOM05D001978 ORTHO05D003036 2.5e-09 65.9 66 51.5
Migut.B01256 Erythranthe guttata HOM05D001978 ORTHO05D003036 4.2e-09 65.1 66 53.0
HanXRQChr01g0015661 Helianthus annuus HOM05D001978 ORTHO05D003036 4.2e-09 65.1 73 54.8
vmacro21141 Vaccinium macrocarpon HOM05D001978 ORTHO05D003036 4.2e-09 65.1 48 64.6
MSTRG.17003 Avicennia marina HOM05D001978 ORTHO05D003036 5.5e-09 64.7 66 53.0
Dinv07789 Davidia involucrata HOM05D001978 ORTHO05D003036 5.5e-09 64.7 66 54.5
Lsat_1_v5_gn_1_101701 Lactuca sativa HOM05D001978 ORTHO05D003036 5.5e-09 64.7 67 55.2
Dinv01996 Davidia involucrata HOM05D001978 ORTHO05D003036 9.4e-09 63.9 66 54.5
MSTRG.20555 Avicennia marina HOM05D001978 ORTHO05D003036 1.2e-08 63.5 66 51.5
BcaB03g12953 Brassica carinata HOM05D001978 ORTHO05D003036 1.6e-08 63.2 66 48.5
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 1.6e-08 63.2 66 48.5
Solyc01g088020.3 Solanum lycopersicum HOM05D001978 ORTHO05D003036 2.1e-08 62.8 66 47.0
Sopen01g034910 Solanum pennellii HOM05D001978 ORTHO05D003036 2.1e-08 62.8 66 47.0
AT1G18830 Arabidopsis thaliana HOM05D001978 ORTHO05D003036 2.7e-08 62.4 64 51.6
CAN.G909.18 Capsicum annuum HOM05D001978 ORTHO05D003036 2.7e-08 62.4 66 47.0
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 4.7e-08 61.6 66 47.0
Nitab4.5_0002888g0010 Nicotiana tabacum HOM05D001978 ORTHO05D003036 6.1e-08 61.2 66 47.0
Nitab4.5_0006695g0020 Nicotiana tabacum HOM05D001978 ORTHO05D003036 6.1e-08 61.2 66 47.0
Peaxi162Scf01108g00213 Petunia axillaris HOM05D001978 ORTHO05D003036 6.1e-08 61.2 66 45.5
SalBow5G1268 Salvia bowleyana HOM05D001978 ORTHO05D003036 6.1e-08 61.2 66 50.0
SalBow5G4104 Salvia bowleyana HOM05D001978 ORTHO05D003036 6.1e-08 61.2 66 50.0
BcaC07g38951 Brassica carinata HOM05D001978 ORTHO05D003036 7.9e-08 60.8 66 47.0
C08p18950 Brassica napus HOM05D001978 ORTHO05D003036 7.9e-08 60.8 66 47.0
BolC8t49521H Brassica oleracea HOM05D001978 ORTHO05D003036 7.9e-08 60.8 66 47.0
AagrBONN_evm.TU.Sc2ySwM_117.496 Anthoceros agrestis HOM05D001978 ORTHO05D003036 2.3e-07 59.3 64 45.3
Mapoly0156s0008 Marchantia polymorpha HOM05D001978 ORTHO05D003036 8.8e-07 57.4 66 43.9
Carub.0001s1846 Capsella rubella HOM05D001978 ORTHO05D003036 2.0e-06 56.2 63 49.2
Zm00001eb110650 Zea mays HOM05D001978 ORTHO05D003036 3.3e-06 55.5 65 41.5
COL.COLO4_18389 Corchorus olitorius HOM05D001978 ORTHO05D003036 4.4e-06 55.1 54 48.1
CBR_g4546 Chara braunii HOM05D001978 ORTHO05D003036 5.7e-06 54.7 66 39.4
Zm00001eb329590 Zea mays HOM05D001978 ORTHO05D003036 5.7e-06 54.7 65 43.1
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 7.4e-06 54.3 64 40.6
Pp3c2_17710 Physcomitrium patens HOM05D001978 ORTHO05D003036 9.7e-06 53.9 65 43.1


User provided reference genes

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