Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 2.7e-67 258.8 163 100.0
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.7e-37 159.8 127 69.3
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 1.7e-37 159.8 127 69.3
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.8e-37 158.7 127 68.5
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.8e-37 158.7 127 68.5
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 3.8e-37 158.7 127 68.5
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 6.5e-37 157.9 80 97.5
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 8.5e-37 157.5 127 67.7
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 1.9e-36 156.4 79 97.5
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 1.9e-36 156.4 127 66.9
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 1.9e-36 156.4 79 97.5
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 1.9e-36 156.4 79 97.5
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 1.9e-36 156.4 79 97.5
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 1.9e-36 156.4 79 97.5
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 4.2e-36 155.2 79 96.2
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 5.5e-36 154.8 125 68.0
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 7.2e-36 154.5 79 96.2
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 9.4e-36 154.1 79 94.9
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 9.4e-36 154.1 125 68.0
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 9.4e-36 154.1 127 66.1
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 9.4e-36 154.1 127 66.1
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 9.4e-36 154.1 127 66.1
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 9.4e-36 154.1 79 94.9
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 67.2
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 1.2e-35 153.7 125 68.0
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 1.6e-35 153.3 125 66.4
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.6e-35 153.3 125 66.4
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 1.6e-35 153.3 124 66.9
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 1.6e-35 153.3 124 66.9
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 1.6e-35 153.3 125 66.4
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 1.6e-35 153.3 125 66.4
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.1e-35 152.9 83 90.4
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.1e-35 152.9 79 93.7
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 2.1e-35 152.9 82 91.5
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 2.7e-35 152.5 125 66.4
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 2.7e-35 152.5 125 66.4
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 2.7e-35 152.5 125 66.4
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 2.7e-35 152.5 125 66.4
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 2.7e-35 152.5 125 66.4
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 2.7e-35 152.5 125 66.4
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 2.7e-35 152.5 125 66.4
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 3.6e-35 152.1 125 66.4
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 3.6e-35 152.1 125 66.4
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 3.6e-35 152.1 125 66.4
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 3.6e-35 152.1 79 93.7
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 3.6e-35 152.1 79 93.7
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 4.7e-35 151.8 125 66.4
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 4.7e-35 151.8 125 66.4
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 6.1e-35 151.4 125 66.4
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 6.1e-35 151.4 125 66.4
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 6.1e-35 151.4 77 96.1
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 6.1e-35 151.4 77 96.1
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 6.1e-35 151.4 125 66.4
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 6.1e-35 151.4 77 96.1
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 6.1e-35 151.4 77 96.1
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 8.0e-35 151.0 78 93.6
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.0e-34 150.6 125 65.6
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 1.0e-34 150.6 79 92.4
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 1.4e-34 150.2 77 94.8
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 1.4e-34 150.2 125 65.6
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.4e-34 150.2 77 94.8
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 1.4e-34 150.2 77 94.8
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 1.4e-34 150.2 77 94.8
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 1.8e-34 149.8 125 65.6
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 1.8e-34 149.8 125 65.6
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 2.3e-34 149.4 77 94.8
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 3.0e-34 149.1 77 93.5
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 3.0e-34 149.1 79 89.9
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 3.0e-34 149.1 76 94.7
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 3.0e-34 149.1 79 91.1
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 3.0e-34 149.1 79 89.9
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 3.0e-34 149.1 77 93.5
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 4.0e-34 148.7 77 93.5
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 4.0e-34 148.7 125 64.0
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 4.0e-34 148.7 79 92.4
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 4.0e-34 148.7 79 92.4
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 4.0e-34 148.7 79 92.4
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 8.8e-34 147.5 77 92.2
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.8e-34 147.5 77 92.2
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.8e-34 147.5 77 92.2
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 8.8e-34 147.5 77 92.2
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.2e-33 147.1 76 93.4
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 1.2e-33 147.1 76 93.4
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 2.0e-33 146.4 77 90.9
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 2.0e-33 146.4 77 90.9
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 2.0e-33 146.4 77 92.2
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 2.6e-33 146.0 77 92.2
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 2.6e-33 146.0 77 89.6
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.6e-33 146.0 77 90.9
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 4.4e-33 145.2 77 90.9
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 4.4e-33 145.2 125 62.4
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 5.7e-33 144.8 77 90.9
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 7.5e-33 144.4 77 89.6
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 9.8e-33 144.1 79 87.3
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 2.2e-32 142.9 79 88.6
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 2.8e-32 142.5 79 87.3
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 2.8e-32 142.5 138 59.4
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 2.4e-31 139.4 77 85.7
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 3.1e-31 139.0 77 83.1
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.7e-30 136.0 115 66.1
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 3.3e-28 129.0 113 64.6
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 5.5e-28 128.3 79 70.9
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.4e-26 123.6 79 83.5
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 4.4e-25 118.6 58 98.3
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 4.1e-23 112.1 77 76.6
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 2.7e-22 109.4 80 60.0
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 7.8e-22 107.8 53 98.1
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 8.6e-21 104.4 55 90.9
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 1.5e-20 103.6 53 94.3
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 2.5e-20 102.8 54 94.4
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 3.3e-20 102.4 53 94.3
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 4.3e-20 102.1 50 96.0
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 5.6e-20 101.7 53 90.6
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 6.1e-19 98.2 67 76.1
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 4.0e-18 95.5 49 91.8
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.3e-16 90.5 53 84.9
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 8.9e-10 67.8 31 100.0
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 4.1e-07 58.9 125 36.8
Eucgr.H03686 Eucalyptus grandis HOM05D004922 ORTHO05D193424 2.7e-06 56.2 75 50.7


User provided reference genes

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