Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0236221 Rosa chinensis HOM05D002804 ORTHO05D341151 2.6e-80 302.0 153 100.0
RcHm_v2.0_Chr0c11g0499481 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-38 162.9 104 79.8
RcHm_v2.0_Chr7g0236241 Rosa chinensis HOM05D002804 ORTHO05D003755 1.9e-38 162.9 104 79.8
RcHm_v2.0_Chr7g0236171 Rosa chinensis HOM05D002804 ORTHO05D003755 3.0e-36 155.6 129 64.3
RcHm_v2.0_Chr0c11g0499391 Rosa chinensis HOM05D002804 ORTHO05D003755 6.8e-36 154.5 129 63.6
RcHm_v2.0_Chr7g0218341 Rosa chinensis HOM05D002804 ORTHO05D003755 4.9e-34 148.3 106 72.6
RcHm_v2.0_Chr0c11g0499411 Rosa chinensis HOM05D002804 ORTHO05D003755 1.8e-33 146.4 88 81.8
RcHm_v2.0_Chr0c11g0499401 Rosa chinensis HOM05D002804 ORTHO05D022637 1.2e-32 143.7 103 69.9
RcHm_v2.0_Chr7g0236331 Rosa chinensis HOM05D002804 ORTHO05D003755 6.2e-29 131.3 106 67.0
RcHm_v2.0_Chr7g0236051 Rosa chinensis HOM05D002804 ORTHO05D003755 1.3e-26 123.6 104 62.5
FvH4_5g31150 Fragaria vesca HOM05D002804 ORTHO05D022637 6.4e-26 121.3 100 61.0
RcHm_v2.0_Chr7g0235971 Rosa chinensis HOM05D002804 ORTHO05D003755 1.4e-25 120.2 104 60.6
RcHm_v2.0_Chr7g0235811 Rosa chinensis HOM05D002804 ORTHO05D003755 7.0e-25 117.9 95 58.9
RcHm_v2.0_Chr0c11g0499511 Rosa chinensis HOM05D002804 ORTHO05D003755 6.0e-24 114.8 106 58.5
RcHm_v2.0_Chr7g0235901 Rosa chinensis HOM05D002804 ORTHO05D003755 6.0e-24 114.8 107 55.1
FvH4_5g31080 Fragaria vesca HOM05D002804 ORTHO05D003755 7.8e-24 114.4 100 61.0
FvH4_5g35300 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-23 113.2 107 54.2
RcHm_v2.0_Chr7g0236021 Rosa chinensis HOM05D002804 ORTHO05D003755 1.7e-23 113.2 107 53.3
FAN13G2866 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.3e-23 112.8 150 42.0
RcHm_v2.0_Chr7g0236031 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-23 112.8 107 52.3
FAN08G1393 Fragaria x ananassa HOM05D002804 ORTHO05D029665 3.9e-23 112.1 107 54.2
RcHm_v2.0_Chr7g0235931 Rosa chinensis HOM05D002804 ORTHO05D003755 6.6e-23 111.3 89 68.5
FvH4_5g31070 Fragaria vesca HOM05D002804 ORTHO05D003755 8.6e-23 110.9 107 53.3
RcHm_v2.0_Chr7g0235921 Rosa chinensis HOM05D002804 ORTHO05D003755 1.1e-22 110.5 107 52.3
FAN18G0121 Fragaria x ananassa HOM05D002804 ORTHO05D029665 1.5e-22 110.2 107 53.3
FvH4_5g35070 Fragaria vesca HOM05D002804 ORTHO05D029636 3.3e-22 109.0 98 51.0
FAN18G3851 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.3e-22 107.8 97 54.6
RcHm_v2.0_Chr0c11g0499461 Rosa chinensis HOM05D002804 ORTHO05D003755 7.3e-22 107.8 77 70.1
RcHm_v2.0_Chr7g0236191 Rosa chinensis HOM05D002804 ORTHO05D022637 7.3e-22 107.8 77 70.1
RcHm_v2.0_Chr1g0342791 Rosa chinensis HOM05D002804 ORTHO05D003755 4.7e-21 105.1 91 59.3
FAN18G3080 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.1e-20 104.0 107 50.5
FvH4_5g34950 Fragaria vesca HOM05D002804 ORTHO05D003755 2.3e-20 102.8 96 55.2
FvH4_5g35080 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-19 100.5 103 48.5
FvH4_5g35322 Fragaria vesca HOM05D002804 ORTHO05D003755 1.2e-19 100.5 106 47.2
FvH4_5g35000 Fragaria vesca HOM05D002804 ORTHO05D003755 1.5e-19 100.1 107 50.5
FAN18G3590 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-19 99.4 98 50.0
FAN18G3729 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.6e-19 99.4 98 50.0
FvH4_5g35254 Fragaria vesca HOM05D002804 ORTHO05D022637 4.4e-19 98.6 106 54.7
FAN18G1408 Fragaria x ananassa HOM05D002804 ORTHO05D022637 4.4e-19 98.6 106 54.7
FAN08G0149 Fragaria x ananassa HOM05D002804 ORTHO05D029665 5.8e-19 98.2 107 47.7
FAN08G1215 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.5e-19 97.8 99 53.5
FAN04G1488 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.8e-19 97.4 99 51.5
FvH4_5g32080 Fragaria vesca HOM05D002804 ORTHO05D029665 1.3e-18 97.1 107 47.7
FAN08G2676 Fragaria x ananassa HOM05D002804 ORTHO05D025426 1.1e-17 94.0 106 48.1
RcHm_v2.0_Chr7g0193131 Rosa chinensis HOM05D002804 ORTHO05D003755 4.1e-17 92.0 99 49.5
FAN13G2413 Fragaria x ananassa HOM05D002804 ORTHO05D022637 7.1e-17 91.3 77 57.1
FvH4_5g34900 Fragaria vesca HOM05D002804 ORTHO05D025426 2.7e-16 89.4 106 48.1
RcHm_v2.0_Chr7g0235841 Rosa chinensis HOM05D002804 ORTHO05D025426 3.5e-16 89.0 107 49.5
RcHm_v2.0_Chr7g0218381 Rosa chinensis HOM05D002804 ORTHO05D003755 2.3e-15 86.3 81 55.6
FAN18G3994 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-14 83.6 107 43.9
FAN04G2366 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.5e-14 80.9 66 62.1
RcHm_v2.0_Chr7g0235871 Rosa chinensis HOM05D002804 ORTHO05D003755 4.7e-13 78.6 88 45.5
FvH4_5g35060 Fragaria vesca HOM05D002804 ORTHO05D003755 1.4e-12 77.0 89 53.9
FvH4_5g05670 Fragaria vesca HOM05D002804 ORTHO05D003755 5.2e-12 75.1 90 46.7
FAN13G1594 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.2e-11 73.9 93 44.1
FAN13G0623 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.0e-11 73.2 90 44.4
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 2.0e-11 73.2 90 44.4
FAN13G0906 Fragaria x ananassa HOM05D002804 ORTHO05D208549 2.6e-11 72.8 84 45.2
FvH4_5g34930 Fragaria vesca HOM05D002804 ORTHO05D025426 5.8e-11 71.6 88 45.5
FvH4_7g08990 Fragaria vesca HOM05D002804 ORTHO05D003755 9.2e-09 64.3 80 45.0
FAN03G3123 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.2e-09 64.3 83 45.8
FAN18G3114 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.6e-08 63.5 103 36.9
RcHm_v2.0_Chr7g0230641 Rosa chinensis HOM05D002804 ORTHO05D003755 2.7e-08 62.8 53 54.7
FAN04G0362 Fragaria x ananassa HOM05D002804 ORTHO05D003755 8.6e-07 57.8 49 59.2
FAN18G0864 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.9e-06 56.6 51 54.9
FAN08G3046 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.3e-06 55.8 49 55.1
FAN18G4091 Fragaria x ananassa HOM05D002804 ORTHO05D003755 9.6e-06 54.3 106 34.0


User provided reference genes

Program Settings