Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.4e-262 909.1 441 100.0
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.2e-246 854.0 434 94.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.5e-245 852.4 434 94.7
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.3e-244 849.4 434 94.5
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.7e-244 847.8 434 94.2
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.5e-237 825.9 441 89.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 4.4e-237 824.3 441 89.1
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.5e-232 809.3 438 86.8
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.9e-232 808.9 440 87.3
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 5.6e-232 807.4 441 87.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.2e-231 806.2 440 87.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.8e-231 805.1 455 85.1
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 6.1e-231 803.9 437 87.2
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.9e-227 792.3 438 85.4
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.4e-227 792.0 434 84.8
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 3.2e-227 791.6 438 84.2
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 7.0e-227 790.4 441 84.4
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 7.0e-227 790.4 438 84.9
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 1.2e-226 789.6 441 83.9
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.7e-225 785.8 441 85.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.3e-225 785.4 433 85.0
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 3.0e-225 785.0 434 84.3
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 3.9e-225 784.6 434 84.1
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 8.6e-225 783.5 441 83.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 8.6e-225 783.5 432 86.3
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.5e-224 782.7 441 83.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.9e-224 782.3 438 84.7
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.9e-224 782.3 436 83.5
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.5e-224 781.9 433 84.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 9.5e-224 780.0 439 82.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.1e-223 778.9 432 83.6
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.1e-223 778.9 432 83.6
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.1e-223 778.9 433 84.8
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.8e-222 775.8 441 82.5
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.0e-222 774.6 434 82.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 5.2e-222 774.2 436 83.0
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.8e-222 773.9 436 83.7
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 6.8e-222 773.9 436 83.5
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.5e-221 772.7 433 85.5
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.0e-221 772.3 441 81.4
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 5.8e-221 770.8 436 82.8
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 9.8e-221 770.0 441 81.2
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.7e-220 768.1 432 83.1
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 4.9e-220 767.7 441 81.6
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 4.9e-220 767.7 436 82.1
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 6.4e-220 767.3 438 81.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.1e-219 766.5 433 83.4
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 5.4e-219 764.2 432 81.5
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 2.7e-218 761.9 439 81.8
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 2.7e-218 761.9 439 81.8
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.5e-218 761.5 439 81.8
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.0e-217 760.0 438 81.5
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.3e-217 758.8 439 81.3
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.6e-217 757.3 438 81.1
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.1e-216 756.5 429 82.8
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.1e-216 756.5 438 81.1
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.5e-216 755.4 436 81.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 3.3e-216 755.0 436 81.2
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 3.3e-216 755.0 429 81.8
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 7.3e-216 753.8 433 80.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 9.5e-216 753.4 433 79.4
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.2e-215 753.1 438 81.3
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.6e-215 752.7 437 81.0
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 3.6e-215 751.5 429 81.6
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 3.6e-215 751.5 472 75.6
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 6.2e-215 750.7 433 81.3
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 8.1e-215 750.4 437 79.9
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.1e-214 750.0 437 80.5
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 2.3e-214 748.8 433 82.0
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.8e-214 747.3 442 80.3
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 6.8e-214 747.3 428 82.0
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.2e-213 746.5 444 80.0
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.2e-213 746.5 431 80.7
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.2e-213 746.5 496 72.0
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.5e-213 746.1 441 79.4
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 7.5e-213 743.8 433 81.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.2e-212 742.3 439 78.8
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 4.1e-211 738.0 432 79.2
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 5.4e-211 737.6 441 78.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 2.7e-210 735.3 436 78.9
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 7.8e-210 733.8 438 78.1
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 3.9e-209 731.5 512 70.7
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 1.9e-208 729.2 408 84.1
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 8.1e-207 723.8 433 77.1
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 8.9e-206 720.3 416 82.2
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 9.9e-205 716.8 526 69.4
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 3.2e-203 711.8 422 80.6
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 5.4e-203 711.1 401 82.5
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.0e-201 706.8 433 76.4
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.3e-201 706.4 433 76.4
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 3.9e-201 704.9 434 77.0
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 1.1e-198 696.8 406 80.0
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 2.0e-197 692.6 395 83.3
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.2e-196 689.1 427 76.8
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 2.1e-194 682.6 435 73.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.7e-194 682.2 434 75.6
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 6.6e-193 677.6 445 71.5
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.9e-192 676.0 433 73.9
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.3e-192 674.9 433 73.4
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 8.4e-188 660.6 437 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 7.1e-187 657.5 426 72.5
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.3e-184 648.3 441 73.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.6e-183 646.4 433 69.1
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 2.8e-183 645.6 427 71.0
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.2e-179 631.7 432 68.5
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 5.5e-179 631.3 340 87.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.7e-178 629.0 427 69.6
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 7.4e-176 620.9 432 68.1
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.5e-173 613.2 339 85.0
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.2e-172 609.4 329 85.7
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 7.9e-170 600.9 344 82.0
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.6e-167 593.2 387 73.6
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.2e-165 587.0 436 63.5
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.0e-164 581.6 441 63.5
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.4e-163 580.1 354 78.5
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.2e-163 578.9 439 67.0
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 9.4e-163 577.4 441 62.8
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-160 570.1 439 64.0
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 3.4e-157 558.9 426 60.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 9.4e-155 550.8 297 87.9
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.1e-146 523.1 352 71.9
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 6.1e-146 521.5 336 73.8
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.6e-141 506.1 427 57.8
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 6.1e-138 495.0 382 65.2
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 5.5e-131 471.9 432 53.5
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 3.5e-117 426.0 352 63.4
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.1e-110 404.4 240 79.6
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.7e-106 389.0 223 83.0
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.1e-94 349.4 228 72.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 2.1e-77 293.9 195 70.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.2e-72 278.1 157 84.7
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.9e-71 273.5 151 82.8
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.6e-69 267.7 134 97.0
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.9e-69 265.4 145 84.8
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 4.3e-67 259.6 197 67.0
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.8e-58 229.6 234 54.7
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-49 201.8 113 83.2
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.9e-47 193.7 107 79.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 4.1e-41 173.3 137 63.5
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-35 154.8 88 81.8
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 4.8e-34 149.8 93 76.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 4.1e-33 146.7 204 41.7
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 7.7e-32 142.5 165 47.9
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.9e-31 140.6 82 82.9
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.7e-26 124.8 84 67.9
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.1e-25 119.0 80 66.2
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.5e-22 111.7 242 33.9
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.4e-20 105.1 57 77.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 6.8e-20 102.8 72 61.1
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 5.7e-19 99.8 62 75.8
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 4.1e-17 93.6 121 44.6
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 8.0e-13 79.3 36 88.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.3e-12 77.8 38 84.2
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 1.4e-09 68.6 99 43.4
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 3.1e-09 67.4 35 85.7
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 6.6e-07 59.7 35 71.4
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 8.6e-07 59.3 69 49.3
Mapoly0073s0071 Marchantia polymorpha HOM05D002051 ORTHO05D002041 7.3e-06 56.2 305 22.0


User provided reference genes

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