Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0208541 Rosa chinensis HOM05D000836 ORTHO05D000709 5.6e-39 163.7 77 100.0
RcHm_v2.0_Chr4g0434291 Rosa chinensis HOM05D000836 ORTHO05D000709 9.7e-15 83.2 40 100.0
RcHm_v2.0_Chr6g0312941 Rosa chinensis HOM05D000836 ORTHO05D000709 3.7e-14 81.3 40 97.5
TWI34G1325 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 3.4e-12 74.7 40 85.0
Manes.03G065632 Manihot esculenta HOM05D000836 ORTHO05D000709 5.9e-12 73.9 40 82.5
FAN15G1543 Fragaria x ananassa HOM05D000836 ORTHO05D000709 1.3e-11 72.8 40 92.5
FAN27G3482 Fragaria x ananassa HOM05D000836 ORTHO05D000709 1.3e-11 72.8 40 92.5
SHI18602 Sapria himalayana HOM05D000836 ORTHO05D000709 1.7e-11 72.4 40 80.0
FAN20G0971 Fragaria x ananassa HOM05D000836 ORTHO05D000709 2.9e-11 71.6 40 90.0
TWI63G0413 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 2.9e-11 71.6 40 82.5
CiPaw.08G014700 Carya illinoinensis HOM05D000836 ORTHO05D000709 3.8e-11 71.2 40 82.5
FvH4_2g29940 Fragaria vesca HOM05D000836 ORTHO05D000709 3.8e-11 71.2 40 90.0
FAN24G1350 Fragaria x ananassa HOM05D000836 ORTHO05D000709 3.8e-11 71.2 40 90.0
MD08G1139100 Malus domestica HOM05D000836 ORTHO05D000709 1.4e-10 69.3 38 81.6
MD15G1117100 Malus domestica HOM05D000836 ORTHO05D000709 1.9e-10 68.9 39 79.5
Ciclev10007390m.g Citrus clementina HOM05D000836 ORTHO05D000709 3.2e-10 68.2 40 80.0
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 3.2e-10 68.2 40 85.0
Gorai.013G240700 Gossypium raimondii HOM05D000836 ORTHO05D000709 3.2e-10 68.2 40 85.0
Manes.16G067500 Manihot esculenta HOM05D000836 ORTHO05D000709 3.2e-10 68.2 37 81.1
TAR625G0142 Trochodendron aralioides HOM05D000836 ORTHO05D000709 4.2e-10 67.8 40 77.5
Dinv30200 Davidia involucrata HOM05D000836 ORTHO05D000709 5.5e-10 67.4 40 80.0
TAR636G0333 Trochodendron aralioides HOM05D000836 ORTHO05D000709 5.5e-10 67.4 40 77.5
TPR.G20092 Trifolium pratense HOM05D000836 ORTHO05D000709 7.2e-10 67.0 40 80.0
CiPaw.07G218800 Carya illinoinensis HOM05D000836 ORTHO05D000709 9.4e-10 66.6 40 72.5
Lj5g0025520 Lotus japonicus HOM05D000836 ORTHO05D000709 9.4e-10 66.6 40 80.0
Actinidia13278 Actinidia chinensis HOM05D000836 ORTHO05D000709 1.2e-09 66.2 40 75.0
AL7G19210 Arabidopsis lyrata HOM05D000836 ORTHO05D000709 1.2e-09 66.2 40 75.0
BcaC09g52046 Brassica carinata HOM05D000836 ORTHO05D000709 1.6e-09 65.9 40 75.0
Ca_12916_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 1.6e-09 65.9 40 80.0
Nn2g11859 Nelumbo nucifera HOM05D000836 ORTHO05D000709 1.6e-09 65.9 40 75.0
Thecc.09G146300 Theobroma cacao HOM05D000836 ORTHO05D000709 1.6e-09 65.9 40 82.5
AT4G32551 Arabidopsis thaliana HOM05D000836 ORTHO05D000709 2.1e-09 65.5 40 75.0
Cpa.g.sc91.27 Carica papaya HOM05D000836 ORTHO05D000709 2.7e-09 65.1 40 70.0
Gohir.A13G206200 Gossypium hirsutum HOM05D000836 ORTHO05D000709 2.7e-09 65.1 40 82.5
vmacro05221 Vaccinium macrocarpon HOM05D000836 ORTHO05D000709 2.7e-09 65.1 40 70.0
A08p18130 Brassica napus HOM05D000836 ORTHO05D000709 3.6e-09 64.7 40 72.5
BraA08t33765Z Brassica rapa HOM05D000836 ORTHO05D000709 3.6e-09 64.7 40 72.5
Phvul.009G096600 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 3.6e-09 64.7 40 77.5
Potri.018G033300 Populus trichocarpa HOM05D000836 ORTHO05D000709 3.6e-09 64.7 40 75.0
TAR626G1454 Trochodendron aralioides HOM05D000836 ORTHO05D000709 3.6e-09 64.7 40 72.5
VMungo1309G0688 Vigna mungo HOM05D000836 ORTHO05D000709 3.6e-09 64.7 40 77.5
BcaB03g12751 Brassica carinata HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
BcaC01g01014 Brassica carinata HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
BcaNung03595 Brassica carinata HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
BcaNung04517 Brassica carinata HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
C07p59260 Brassica napus HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
BolC3t21028H Brassica oleracea HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
BolC7t46372H Brassica oleracea HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
Carub.0007s0800 Capsella rubella HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 72.5
Medtr1g011610 Medicago truncatula HOM05D000836 ORTHO05D000709 4.6e-09 64.3 40 77.5
Psat6g030760 Pisum sativum HOM05D000836 ORTHO05D000709 4.6e-09 64.3 39 79.5
SGA_v2.0_scaffold448G51776 Striga asiatica HOM05D000836 ORTHO05D000709 4.6e-09 64.3 38 76.3
Thhalv10024343m.g Eutrema salsugineum HOM05D000836 ORTHO05D000709 6.1e-09 63.9 40 72.5
Glyma.17G205700 Glycine max HOM05D000836 ORTHO05D000709 7.9e-09 63.5 40 75.0
MBI04_g08377_MAGBIO Magnolia biondii HOM05D000836 ORTHO05D000709 7.9e-09 63.5 41 78.0
QL12p031494 Quercus lobata HOM05D000836 ORTHO05D000709 7.9e-09 63.5 40 72.5
Sabra06G0194100 Salix brachista HOM05D000836 ORTHO05D000709 7.9e-09 63.5 40 67.5
Glyma.06G072200 Glycine max HOM05D000836 ORTHO05D000709 1.0e-08 63.2 40 75.0
Oeu045186.4 Olea europaea HOM05D000836 ORTHO05D000709 1.0e-08 63.2 40 70.0
Sc09g0008770 Simmondsia chinensis HOM05D000836 ORTHO05D000709 1.0e-08 63.2 40 75.0
Nn8g39314 Nelumbo nucifera HOM05D000836 ORTHO05D000709 1.4e-08 62.8 40 70.0
THA.LOC104819886 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 1.4e-08 62.8 40 70.0
Atru.chr7.2343 Acer truncatum HOM05D000836 ORTHO05D000709 1.8e-08 62.4 40 75.0
CARHR240520 Cardamine hirsuta HOM05D000836 ORTHO05D000709 1.8e-08 62.4 40 72.5
Glyma.04G070200 Glycine max HOM05D000836 ORTHO05D000709 1.8e-08 62.4 40 75.0
Lj1g0000004 Lotus japonicus HOM05D000836 ORTHO05D000709 1.8e-08 62.4 40 75.0
Prupe.1G468400 Prunus persica HOM05D000836 ORTHO05D000709 1.8e-08 62.4 40 80.0
Actinidia29313 Actinidia chinensis HOM05D000836 ORTHO05D000709 2.3e-08 62.0 40 70.0
EL10Ac2g02555 Beta vulgaris HOM05D000836 ORTHO05D000709 2.3e-08 62.0 40 70.0
Sp7g30330 Schrenkiella parvula HOM05D000836 ORTHO05D000709 2.3e-08 62.0 40 70.0
Atru.chr7.1275 Acer truncatum HOM05D000836 ORTHO05D000709 3.0e-08 61.6 40 75.0
CsaV3_2G031700 Cucumis sativus L. HOM05D000836 ORTHO05D000709 3.0e-08 61.6 39 74.4
Phvul.001G054700 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 3.0e-08 61.6 40 75.0
Potri.006G248100 Populus trichocarpa HOM05D000836 ORTHO05D000709 3.0e-08 61.6 40 67.5
VMungo0647G2037 Vigna mungo HOM05D000836 ORTHO05D000709 3.0e-08 61.6 40 75.0
Aa31LG4G11740 Aethionema arabicum HOM05D000836 ORTHO05D000709 3.9e-08 61.2 40 70.0
A01p05840 Brassica napus HOM05D000836 ORTHO05D000709 3.9e-08 61.2 41 73.2
BraA01t00552Z Brassica rapa HOM05D000836 ORTHO05D000709 3.9e-08 61.2 41 73.2
Aqoxy7G03782 Aquilegia oxysepala HOM05D000836 ORTHO05D000709 5.1e-08 60.8 39 74.4
arahy.Tifrunner.gnm1.ann1.CM6PIJ Arachis hypogaea HOM05D000836 ORTHO05D000709 5.1e-08 60.8 40 77.5
arahy.Tifrunner.gnm1.ann1.DPIX5V Arachis hypogaea HOM05D000836 ORTHO05D000709 5.1e-08 60.8 40 77.5
MSTRG.11746 Avicennia marina HOM05D000836 ORTHO05D000709 5.1e-08 60.8 40 67.5
CSS0035002 Camellia sinensis var. sinensis HOM05D000836 ORTHO05D000709 5.1e-08 60.8 37 73.0
Glyma.14G128300 Glycine max HOM05D000836 ORTHO05D000709 5.1e-08 60.8 40 70.0
SalBow4G2250 Salvia bowleyana HOM05D000836 ORTHO05D000709 5.1e-08 60.8 47 61.7
arahy.Tifrunner.gnm1.ann1.D7T295 Arachis hypogaea HOM05D000836 ORTHO05D000709 6.7e-08 60.5 40 77.5
arahy.Tifrunner.gnm1.ann1.I2WYER Arachis hypogaea HOM05D000836 ORTHO05D000709 6.7e-08 60.5 40 77.5
Cc11_g01340 Coffea canephora HOM05D000836 ORTHO05D000709 6.7e-08 60.5 40 70.0
Dinv11591 Davidia involucrata HOM05D000836 ORTHO05D000709 6.7e-08 60.5 40 72.5
THA.LOC104803821 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 6.7e-08 60.5 40 67.5
Aqoxy7G01919 Aquilegia oxysepala HOM05D000836 ORTHO05D000709 8.8e-08 60.1 39 69.2
AUR62011043 Chenopodium quinoa HOM05D000836 ORTHO05D000709 8.8e-08 60.1 40 70.0
AUR62033419 Chenopodium quinoa HOM05D000836 ORTHO05D000709 8.8e-08 60.1 40 70.0
MELO3C011220.2 Cucumis melo HOM05D000836 ORTHO05D000709 8.8e-08 60.1 39 71.8
DCAR_007685 Daucus carota HOM05D000836 ORTHO05D000709 8.8e-08 60.1 40 75.0
Lalb_Chr08g0243861 Lupinus albus HOM05D000836 ORTHO05D000709 8.8e-08 60.1 40 72.5
Lalb_Chr11g0063901 Lupinus albus HOM05D000836 ORTHO05D000709 8.8e-08 60.1 40 72.5
MBI01_g36037_MAGBIO Magnolia biondii HOM05D000836 ORTHO05D000709 8.8e-08 60.1 40 70.0
Hma1.2p1_0175F.1_g077110 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 1.1e-07 59.7 40 65.0
Oeu031737.1 Olea europaea HOM05D000836 ORTHO05D000709 1.1e-07 59.7 40 65.0
Hund25689 Selenicereus undatus HOM05D000836 ORTHO05D000709 1.1e-07 59.7 40 65.0
A03p61490 Brassica napus HOM05D000836 ORTHO05D000709 1.5e-07 59.3 42 69.0
BraA03t15193Z Brassica rapa HOM05D000836 ORTHO05D000709 1.5e-07 59.3 42 69.0
Oeu019424.1 Olea europaea HOM05D000836 ORTHO05D000709 1.5e-07 59.3 40 67.5
TPR.G34692 Trifolium pratense HOM05D000836 ORTHO05D000709 1.5e-07 59.3 40 67.5
GSVIVG01035791001 Vitis vinifera HOM05D000836 ORTHO05D000709 1.5e-07 59.3 40 72.5
CANSAT25G0853 Cannabis sativa HOM05D000836 ORTHO05D000709 2.0e-07 58.9 41 70.7
ATR0083G002 Amborella trichopoda HOM05D000836 ORTHO05D000709 2.6e-07 58.5 38 71.1
Lalb_Chr23g0268871 Lupinus albus HOM05D000836 ORTHO05D000709 2.6e-07 58.5 40 70.0
PSO017G2278 Papaver somniferum HOM05D000836 ORTHO05D000709 2.6e-07 58.5 39 66.7
PSO170G5802 Papaver somniferum HOM05D000836 ORTHO05D000709 2.6e-07 58.5 39 66.7
Rhsim07G0155800 Rhododendron simsii HOM05D000836 ORTHO05D000709 2.6e-07 58.5 61 50.8
Duzib168G0754 Durio zibethinus HOM05D000836 ORTHO05D000709 3.3e-07 58.2 39 79.5
Migut.A00286 Erythranthe guttata HOM05D000836 ORTHO05D000709 3.3e-07 58.2 40 67.5
Psat5g028200 Pisum sativum HOM05D000836 ORTHO05D000709 3.3e-07 58.2 42 66.7
ClCG08G012970 Citrullus lanatus HOM05D000836 ORTHO05D000709 4.4e-07 57.8 39 69.2
Medtr3g107910 Medicago truncatula HOM05D000836 ORTHO05D000709 4.4e-07 57.8 40 67.5
Sabra18G0034300 Salix brachista HOM05D000836 ORTHO05D000709 4.4e-07 57.8 40 70.0
Hund09169 Selenicereus undatus HOM05D000836 ORTHO05D000709 5.7e-07 57.4 40 67.5
Ah.12g063550 Amaranthus hybridus HOM05D000836 ORTHO05D000709 7.4e-07 57.0 40 65.0
EL10Ac8g18561 Beta vulgaris HOM05D000836 ORTHO05D000709 7.4e-07 57.0 40 65.0
DCAR_022868 Daucus carota HOM05D000836 ORTHO05D000709 7.4e-07 57.0 40 70.0
THA.LOC104815255 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 7.4e-07 57.0 40 65.0
GSVIVG01015458001 Vitis vinifera HOM05D000836 ORTHO05D000709 7.4e-07 57.0 38 68.4
ATR0665G158 Amborella trichopoda HOM05D000836 ORTHO05D000709 9.7e-07 56.6 37 64.9
C01p06410 Brassica napus HOM05D000836 ORTHO05D000709 9.7e-07 56.6 42 71.4
BolC1t00637H Brassica oleracea HOM05D000836 ORTHO05D000709 9.7e-07 56.6 42 71.4
MBI01_g14216_MAGBIO Magnolia biondii HOM05D000836 ORTHO05D000709 9.7e-07 56.6 43 62.8
PGR044G1421 Punica granatum HOM05D000836 ORTHO05D000709 9.7e-07 56.6 41 70.7
MSTRG.1643 Avicennia marina HOM05D000836 ORTHO05D000709 1.3e-06 56.2 40 62.5
CAN.G199.29 Capsicum annuum HOM05D000836 ORTHO05D000709 1.3e-06 56.2 38 65.8
Solyc06g065640.3 Solanum lycopersicum HOM05D000836 ORTHO05D000709 1.3e-06 56.2 38 65.8
Sopen06g024040 Solanum pennellii HOM05D000836 ORTHO05D000709 1.3e-06 56.2 38 65.8
TAR383G0983 Trochodendron aralioides HOM05D000836 ORTHO05D000709 1.7e-06 55.8 39 71.8
Lj7C714G8 Lonicera japonica HOM05D000836 ORTHO05D000709 2.2e-06 55.5 40 65.0
Sc08g0007020 Simmondsia chinensis HOM05D000836 ORTHO05D000709 2.2e-06 55.5 40 62.5
Cpa.g.c29144.2 Carica papaya HOM05D000836 ORTHO05D000709 2.8e-06 55.1 40 62.5
Peaxi162Scf00545g00213 Petunia axillaris HOM05D000836 ORTHO05D000709 2.8e-06 55.1 38 65.8
Hma1.2p1_0320F.1_g123965 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 4.8e-06 54.3 40 65.0
Lsat_1_v5_gn_5_32800 Lactuca sativa HOM05D000836 ORTHO05D000709 6.3e-06 53.9 37 67.6
Lalb_Chr13g0302231 Lupinus albus HOM05D000836 ORTHO05D000709 6.3e-06 53.9 39 56.4
unitig_748.g7364 Utricularia gibba HOM05D000836 ORTHO05D000709 8.2e-06 53.5 40 60.0


User provided reference genes

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