Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0208291 Rosa chinensis HOM05D002708 ORTHO05D016265 4.6e-135 484.6 247 100.0
FAN18G1042 Fragaria x ananassa HOM05D002708 ORTHO05D016265 1.5e-106 389.8 227 84.6
FvH4_5g21160 Fragaria vesca HOM05D002708 ORTHO05D016265 5.9e-106 387.9 222 86.5
FAN13G0591 Fragaria x ananassa HOM05D002708 ORTHO05D016265 6.7e-102 374.4 222 83.3
FAN04G2890 Fragaria x ananassa HOM05D002708 ORTHO05D016265 1.1e-99 367.1 260 73.5
Prupe.5G046800 Prunus persica HOM05D002708 ORTHO05D016265 2.3e-49 199.9 173 62.4
MD06G1040600 Malus domestica HOM05D002708 ORTHO05D016265 1.7e-44 183.7 191 54.5
HPP92_028477 Vanilla planifolia HOM05D002708 ORTHO05D003516 1.9e-27 127.1 170 41.8
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 9.3e-27 124.8 162 43.2
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 1.2e-26 124.4 163 39.9
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 2.1e-26 123.6 158 42.4
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 2.1e-26 123.6 155 43.2
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 7.9e-26 121.7 162 40.1
Atru.chr3.3419 Acer truncatum HOM05D002708 ORTHO05D003516 1.3e-25 120.9 154 42.9
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 1.8e-25 120.6 163 41.1
CiPaw.08G004600 Carya illinoinensis HOM05D002708 ORTHO05D003516 1.8e-25 120.6 155 41.3
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 2.3e-25 120.2 155 40.0
MD12G1258100 Malus domestica HOM05D002708 ORTHO05D003516 3.9e-25 119.4 155 41.9
Atru.chr7.2587 Acer truncatum HOM05D002708 ORTHO05D003516 5.1e-25 119.0 154 42.2
TAR375G0649 Trochodendron aralioides HOM05D002708 ORTHO05D016265 6.7e-25 118.6 155 42.6
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 8.7e-25 118.2 158 41.1
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 8.7e-25 118.2 162 40.7
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 1.1e-24 117.9 155 40.6
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.1e-24 117.9 158 41.1
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 1.1e-24 117.9 154 40.9
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 1.1e-24 117.9 156 40.4
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 1.1e-24 117.9 156 40.4
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 1.5e-24 117.5 156 43.6
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 1.9e-24 117.1 154 40.9
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.9e-24 117.1 156 42.9
CANSAT25G3904 Cannabis sativa HOM05D002708 ORTHO05D003516 2.5e-24 116.7 155 43.2
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 2.5e-24 116.7 158 39.2
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 2.5e-24 116.7 150 41.3
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 3.3e-24 116.3 154 40.3
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.6e-24 115.5 161 42.2
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 5.6e-24 115.5 161 42.2
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 5.6e-24 115.5 161 42.2
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 5.6e-24 115.5 155 41.3
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 7.4e-24 115.2 158 40.5
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 7.4e-24 115.2 156 39.7
TWI63G0006 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 7.4e-24 115.2 155 41.3
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 7.4e-24 115.2 186 37.6
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 9.6e-24 114.8 152 38.8
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.3e-23 114.4 154 39.6
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.3e-23 114.4 158 39.9
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 1.6e-23 114.0 155 39.4
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 1.6e-23 114.0 155 38.7
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 1.6e-23 114.0 152 41.4
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 1.6e-23 114.0 162 40.1
Haze_08297 Corylus avellana HOM05D002708 ORTHO05D016265 2.1e-23 113.6 159 41.5
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 2.1e-23 113.6 158 37.3
Migut.B01470 Erythranthe guttata HOM05D002708 ORTHO05D003516 2.1e-23 113.6 156 39.7
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 2.1e-23 113.6 155 38.1
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 2.8e-23 113.2 155 37.4
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 2.8e-23 113.2 154 38.3
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 3.7e-23 112.8 158 38.6
QL08p065006 Quercus lobata HOM05D002708 ORTHO05D003516 3.7e-23 112.8 158 41.1
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 3.7e-23 112.8 154 39.6
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 4.8e-23 112.5 176 35.8
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 6.2e-23 112.1 146 41.1
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 8.1e-23 111.7 155 38.1
Cfa002667 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.1e-22 111.3 154 35.7
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 1.1e-22 111.3 151 40.4
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 1.4e-22 110.9 151 42.4
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 1.4e-22 110.9 159 35.8
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.8e-22 110.5 151 41.1
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 1.8e-22 110.5 147 38.1
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 1.8e-22 110.5 158 41.1
Potri.018G015200 Populus trichocarpa HOM05D002708 ORTHO05D003516 1.8e-22 110.5 151 38.4
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 2.4e-22 110.2 150 39.3
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 3.1e-22 109.8 154 39.0
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 3.1e-22 109.8 154 39.0
Cfa013020 Carpinus fangiana HOM05D002708 ORTHO05D003516 3.1e-22 109.8 155 37.4
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 3.1e-22 109.8 158 39.9
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 3.1e-22 109.8 169 37.3
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 4.0e-22 109.4 163 37.4
QL02p018118 Quercus lobata HOM05D002708 ORTHO05D003516 4.0e-22 109.4 159 39.6
Carub.0006s2495 Capsella rubella HOM05D002708 ORTHO05D003516 5.3e-22 109.0 141 41.1
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 5.3e-22 109.0 154 36.4
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 6.9e-22 108.6 151 39.7
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 6.9e-22 108.6 151 35.1
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 9.0e-22 108.2 138 39.9
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 9.0e-22 108.2 149 42.3
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 9.0e-22 108.2 154 37.0
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 9.0e-22 108.2 154 36.4
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 9.0e-22 108.2 154 37.0
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 1.5e-21 107.5 154 37.7
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 2.0e-21 107.1 170 34.7
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 2.0e-21 107.1 151 41.1
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.0e-21 107.1 158 40.5
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 2.0e-21 107.1 151 41.1
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 2.6e-21 106.7 150 38.0
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.6e-21 106.7 151 38.4
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 2.6e-21 106.7 151 37.7
BcaC02g08409 Brassica carinata HOM05D002708 ORTHO05D003516 3.4e-21 106.3 140 39.3
C04p54590 Brassica napus HOM05D002708 ORTHO05D003516 3.4e-21 106.3 140 39.3
BolC4t27001H Brassica oleracea HOM05D002708 ORTHO05D003516 3.4e-21 106.3 140 39.3
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 3.4e-21 106.3 154 35.7
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 3.4e-21 106.3 151 35.1
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 4.5e-21 105.9 145 39.3
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 4.5e-21 105.9 140 39.3
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 4.5e-21 105.9 164 37.8
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 4.5e-21 105.9 151 35.1
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 5.8e-21 105.5 149 38.9
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 5.8e-21 105.5 151 37.7
Thhalv10000061m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 7.6e-21 105.1 141 41.1
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 7.6e-21 105.1 158 39.2
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 7.6e-21 105.1 155 36.8
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 1.0e-20 104.8 150 37.3
Potri.006G267500 Populus trichocarpa HOM05D002708 ORTHO05D003516 1.0e-20 104.8 151 37.1
RcHm_v2.0_Chr1g0379241 Rosa chinensis HOM05D002708 ORTHO05D016265 1.0e-20 104.8 56 96.4
THA.LOC104803605 Tarenaya hassleriana HOM05D002708 ORTHO05D003516 1.0e-20 104.8 163 35.0
BcaB06g28016 Brassica carinata HOM05D002708 ORTHO05D003516 1.3e-20 104.4 141 41.1
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 1.7e-20 104.0 158 40.5
AL6G39390 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 2.2e-20 103.6 141 39.0
AT5G27640 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 2.9e-20 103.2 140 37.9
A09p56110 Brassica napus HOM05D002708 ORTHO05D003516 3.8e-20 102.8 141 40.4
AT5G25780 Arabidopsis thaliana HOM05D002708 ORTHO05D003516 4.9e-20 102.4 145 38.6
BcaC07g40905 Brassica carinata HOM05D002708 ORTHO05D003516 4.9e-20 102.4 141 40.4
C08p39040 Brassica napus HOM05D002708 ORTHO05D003516 4.9e-20 102.4 141 40.4
BolC8t51477H Brassica oleracea HOM05D002708 ORTHO05D003516 4.9e-20 102.4 141 40.4
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 4.9e-20 102.4 233 33.0
CARHR294550 Cardamine hirsuta HOM05D002708 ORTHO05D003516 6.5e-20 102.1 141 39.0
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 6.5e-20 102.1 131 41.2
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 8.4e-20 101.7 148 36.5
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 1.1e-19 101.3 148 35.1
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 1.1e-19 101.3 151 34.4
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 1.4e-19 100.9 136 39.7
RcHm_v2.0_Chr7g0235341 Rosa chinensis HOM05D002708 ORTHO05D016265 1.4e-19 100.9 65 86.2
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 1.4e-19 100.9 154 34.4
Sp4g03800 Schrenkiella parvula HOM05D002708 ORTHO05D003516 1.9e-19 100.5 223 29.6
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 5.5e-19 99.0 151 37.1
Dinv43572 Davidia involucrata HOM05D002708 ORTHO05D003516 9.3e-19 98.2 120 43.3
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 9.3e-19 98.2 151 33.8
BraA09t41006Z Brassica rapa HOM05D002708 ORTHO05D003516 1.2e-18 97.8 144 38.9
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 1.2e-18 97.8 178 33.1
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 1.6e-18 97.4 155 35.5
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 2.1e-18 97.1 148 35.8
Rhsim01G0145200 Rhododendron simsii HOM05D002708 ORTHO05D003516 3.5e-18 96.3 146 37.0
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 4.6e-18 95.9 134 38.8
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 4.6e-18 95.9 116 42.2
unitig_0.g1326 Utricularia gibba HOM05D002708 ORTHO05D003516 3.0e-17 93.2 176 32.4
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 6.7e-17 92.0 112 41.1
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.5e-16 90.1 149 33.6
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 3.3e-16 89.7 99 43.4
BcaNung04121 Brassica carinata HOM05D002708 ORTHO05D003516 3.3e-16 89.7 140 39.3
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 4.3e-16 89.4 119 40.3
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 4.3e-16 89.4 99 41.4
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 5.7e-16 89.0 118 39.8
TPR.G27979 Trifolium pratense HOM05D002708 ORTHO05D003516 1.3e-15 87.8 109 37.6
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 4.8e-15 85.9 146 35.6
Thhalv10027018m.g Eutrema salsugineum HOM05D002708 ORTHO05D003516 8.2e-15 85.1 91 49.5
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 1.1e-14 84.7 142 35.2
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 1.8e-14 84.0 99 40.4
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 4.1e-14 82.8 178 32.6
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 4.1e-14 82.8 146 34.9
Glyma.04G057632 Glycine max HOM05D002708 ORTHO05D003516 9.0e-14 81.6 93 39.8
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 7.6e-13 78.6 155 31.6
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.3e-12 77.8 157 33.1
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 2.2e-12 77.0 143 35.0
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 1.1e-11 74.7 140 36.4
SMO270G0119 Selaginella moellendorffii HOM05D002708 ORTHO05D003516 9.3e-11 71.6 142 33.1
SEGI_35485 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 9.3e-11 71.6 63 47.6
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 7.9e-10 68.6 154 31.2
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 3.0e-09 66.6 154 27.3
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 7.4e-08 62.0 102 33.3
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 2.2e-07 60.5 177 29.4
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 1.4e-06 57.8 151 29.1


User provided reference genes

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