Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0305461 Rosa chinensis HOM05D007770 ORTHO05D009827 4.1e-52 208.0 120 100.0
FAN20G1378 Fragaria x ananassa HOM05D007770 ORTHO05D009827 7.7e-43 177.2 114 86.8
FAN27G1234 Fragaria x ananassa HOM05D007770 ORTHO05D009827 1.7e-42 176.0 114 76.3
FvH4_2g36440 Fragaria vesca HOM05D007770 ORTHO05D009827 8.5e-42 173.7 121 74.4
FAN15G1940 Fragaria x ananassa HOM05D007770 ORTHO05D009827 4.7e-32 141.4 79 86.1
MD08G1124100 Malus domestica HOM05D007770 ORTHO05D009827 8.8e-31 137.1 116 58.6
Prupe.1G455800 Prunus persica HOM05D007770 ORTHO05D009827 2.6e-30 135.6 115 68.7
TAR625G0611 Trochodendron aralioides HOM05D007770 ORTHO05D009827 9.4e-25 117.1 111 52.3
Potri.006G278250 Populus trichocarpa HOM05D007770 ORTHO05D009827 2.1e-24 115.9 122 60.7
Thecc.09G003100 Theobroma cacao HOM05D007770 ORTHO05D009827 8.0e-24 114.0 123 62.6
Sabra06G0215900 Salix brachista HOM05D007770 ORTHO05D009827 3.0e-23 112.1 119 63.0
GSVIVG01035563001 Vitis vinifera HOM05D007770 ORTHO05D009827 5.2e-23 111.3 103 66.0
Dinv13246 Davidia involucrata HOM05D007770 ORTHO05D009827 1.2e-22 110.2 121 51.2
TWI34G0832 Tripterygium wilfordii HOM05D007770 ORTHO05D009827 2.6e-22 109.0 114 53.5
AT2G24395 Arabidopsis thaliana HOM05D007770 ORTHO05D009827 5.7e-22 107.8 111 53.2
Lj1g0002810 Lotus japonicus HOM05D007770 ORTHO05D009827 5.7e-22 107.8 120 50.8
Manes.16G137500 Manihot esculenta HOM05D007770 ORTHO05D009827 2.2e-21 105.9 114 53.5
QL12p025908 Quercus lobata HOM05D007770 ORTHO05D009827 2.2e-21 105.9 127 45.7
CiPaw.08G021600 Carya illinoinensis HOM05D007770 ORTHO05D009827 2.8e-21 105.5 117 49.6
Nitab4.5_0001942g0170 Nicotiana tabacum HOM05D007770 ORTHO05D009827 4.8e-21 104.8 91 68.1
Gohir.D06G109700 Gossypium hirsutum HOM05D007770 ORTHO05D009827 1.4e-20 103.2 107 62.6
Gorai.010G124500 Gossypium raimondii HOM05D007770 ORTHO05D009827 1.4e-20 103.2 107 62.6
CARHR117660 Cardamine hirsuta HOM05D007770 ORTHO05D009827 1.8e-20 102.8 97 51.5
Atru.chr7.2683 Acer truncatum HOM05D007770 ORTHO05D009827 2.4e-20 102.4 120 47.5
Duzib150G1352 Durio zibethinus HOM05D007770 ORTHO05D009827 3.1e-20 102.1 120 45.0
Ciclev10010266m.g Citrus clementina HOM05D007770 ORTHO05D009827 4.1e-20 101.7 115 48.7
Carub.0004s0375 Capsella rubella HOM05D007770 ORTHO05D009827 5.3e-20 101.3 113 50.4
PGSC0003DMG400029583 Solanum tuberosum HOM05D007770 ORTHO05D009827 5.3e-20 101.3 99 65.7
CAN.G480.16 Capsicum annuum HOM05D007770 ORTHO05D009827 1.2e-19 100.1 91 68.1
A04p18710 Brassica napus HOM05D007770 ORTHO05D009827 2.0e-19 99.4 121 52.9
CANSAT56G0680 Cannabis sativa HOM05D007770 ORTHO05D009827 2.0e-19 99.4 69 60.9
arahy.Tifrunner.gnm1.ann1.DWH8JW Arachis hypogaea HOM05D007770 ORTHO05D009827 2.7e-19 99.0 109 57.8
arahy.Tifrunner.gnm1.ann1.SE3NL1 Arachis hypogaea HOM05D007770 ORTHO05D009827 2.7e-19 99.0 103 61.2
Thhalv10000372m.g Eutrema salsugineum HOM05D007770 ORTHO05D009827 2.7e-19 99.0 127 45.7
MSTRG.13938 Avicennia marina HOM05D007770 ORTHO05D009827 3.5e-19 98.6 118 41.5
BcaC02g08464 Brassica carinata HOM05D007770 ORTHO05D009827 4.5e-19 98.2 92 65.2
BolC4t26952H Brassica oleracea HOM05D007770 ORTHO05D009827 5.9e-19 97.8 123 55.3
Phvul.009G103700 Phaseolus vulgaris HOM05D007770 ORTHO05D009827 5.9e-19 97.8 84 51.2
Sopen08g022850 Solanum pennellii HOM05D007770 ORTHO05D009827 5.9e-19 97.8 99 61.6
CSS0027547 Camellia sinensis var. sinensis HOM05D007770 ORTHO05D009827 7.7e-19 97.4 74 63.5
Solyc08g069230.3 Solanum lycopersicum HOM05D007770 ORTHO05D009827 7.7e-19 97.4 99 60.6
AL4G14830 Arabidopsis lyrata HOM05D007770 ORTHO05D009827 1.0e-18 97.1 123 46.3
C04p54000 Brassica napus HOM05D007770 ORTHO05D009827 1.7e-18 96.3 123 56.9
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 2.9e-18 95.5 74 55.4
BraA04t17481Z Brassica rapa HOM05D007770 ORTHO05D009827 3.8e-18 95.1 121 52.1
Lsat_1_v5_gn_3_26540 Lactuca sativa HOM05D007770 ORTHO05D009827 3.8e-18 95.1 103 46.6
EL10Ac2g03698 Beta vulgaris HOM05D007770 ORTHO05D009827 6.5e-18 94.4 83 63.9
Sp4g03420 Schrenkiella parvula HOM05D007770 ORTHO05D009827 8.5e-18 94.0 120 45.8
Aa31sc132G30 Aethionema arabicum HOM05D007770 ORTHO05D009827 1.9e-17 92.8 124 41.9
CDE06G0935 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 1.9e-17 92.8 112 55.4
Nn8g41062 Nelumbo nucifera HOM05D007770 ORTHO05D009827 1.9e-17 92.8 113 43.4
SalBow8G5425 Salvia bowleyana HOM05D007770 ORTHO05D009827 1.9e-17 92.8 91 65.9
Eucgr.C04242 Eucalyptus grandis HOM05D007770 ORTHO05D009827 2.5e-17 92.4 105 46.7
CDE02G4318 Ceratophyllum demersum HOM05D007770 ORTHO05D009827 3.2e-17 92.0 112 53.6
HanXRQChr17g0539271 Helianthus annuus HOM05D007770 ORTHO05D009827 4.2e-17 91.7 104 51.0
VMungo1309G0540 Vigna mungo HOM05D007770 ORTHO05D009827 7.2e-17 90.9 68 54.4
TPR.G12312 Trifolium pratense HOM05D007770 ORTHO05D009827 9.4e-17 90.5 77 49.4
ECA246G2424 Erigeron canadensis HOM05D007770 ORTHO05D009827 1.2e-16 90.1 104 42.3
Medtr3g109170 Medicago truncatula HOM05D007770 ORTHO05D009827 1.6e-16 89.7 70 52.9
Migut.E01418 Erythranthe guttata HOM05D007770 ORTHO05D009827 2.1e-16 89.4 102 40.2
PSO063G4434 Papaver somniferum HOM05D007770 ORTHO05D009827 2.1e-16 89.4 106 42.5
Psat5g024680 Pisum sativum HOM05D007770 ORTHO05D009827 2.7e-16 89.0 98 42.9
Glyma.04G077900 Glycine max HOM05D007770 ORTHO05D009827 3.6e-16 88.6 85 51.8
Cc08_g05750 Coffea canephora HOM05D007770 ORTHO05D009827 4.7e-16 88.2 75 49.3
Aqoxy7G02675 Aquilegia oxysepala HOM05D007770 ORTHO05D009827 6.1e-16 87.8 113 41.6
MD15G1102800 Malus domestica HOM05D007770 ORTHO05D009827 4.0e-15 85.1 109 44.0
DCAR_000666 Daucus carota HOM05D007770 ORTHO05D009827 8.8e-15 84.0 107 52.3
HPP92_017098 Vanilla planifolia HOM05D007770 ORTHO05D009827 7.5e-14 80.9 90 41.1
CANSAT56G1809 Cannabis sativa HOM05D007770 ORTHO05D009827 1.3e-13 80.1 63 55.6
MELO3C011169.2 Cucumis melo HOM05D007770 ORTHO05D009827 1.4e-12 76.6 63 60.3
arahy.Tifrunner.gnm1.ann1.T2QDAL Arachis hypogaea HOM05D007770 ORTHO05D009827 4.1e-12 75.1 78 52.6
ClCG08G012500 Citrullus lanatus HOM05D007770 ORTHO05D009827 1.2e-11 73.6 72 50.0
CsaV3_2G031200 Cucumis sativus L. HOM05D007770 ORTHO05D009827 1.2e-11 73.6 72 51.4
Gohir.A06G107400 Gossypium hirsutum HOM05D007770 ORTHO05D009827 1.2e-11 73.6 71 53.5
Lalb_Chr23g0269281 Lupinus albus HOM05D007770 ORTHO05D009827 1.6e-11 73.2 113 50.4
Nitab4.5_0000970g0130 Nicotiana tabacum HOM05D007770 ORTHO05D009827 2.7e-11 72.4 59 54.2
Sed0000657 Sechium edule HOM05D007770 ORTHO05D009827 3.5e-11 72.0 84 45.2
Pp3c27_7640 Physcomitrium patens HOM05D007770 ORTHO05D009827 1.3e-10 70.1 72 44.4
unitig_747.g21378 Utricularia gibba HOM05D007770 ORTHO05D009827 2.9e-10 68.9 102 34.3
Glyma.06G079000 Glycine max HOM05D007770 ORTHO05D009827 1.6e-08 63.2 38 65.8
HPP92_017108 Vanilla planifolia HOM05D007770 ORTHO05D009827 2.1e-08 62.8 60 45.0
Os08g0520850 Oryza sativa ssp. japonica HOM05D007770 ORTHO05D009827 6.1e-08 61.2 31 77.4
CBR_g3948 Chara braunii HOM05D007770 ORTHO05D009827 2.3e-07 59.3 63 42.9
Mapoly0035s0047 Marchantia polymorpha HOM05D007770 ORTHO05D009827 2.3e-07 59.3 70 38.6
Actinidia25745 Actinidia chinensis HOM05D007770 ORTHO05D009827 1.2e-06 57.0 52 50.0


User provided reference genes

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