Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 4.2e-96 354.8 186 100.0
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 9.9e-90 333.6 186 96.8
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.9e-89 331.3 186 95.7
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.1e-88 330.1 186 95.7
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 1.4e-80 303.1 191 89.0
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 1.0e-78 297.0 192 88.0
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.2e-74 283.5 186 85.5
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.2e-71 273.5 192 82.8
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 4.6e-63 245.0 193 71.0
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 3.0e-62 242.3 189 72.5
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.1e-61 240.4 189 72.5
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.1e-61 240.4 193 71.0
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.5e-61 240.0 193 71.5
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 3.7e-60 235.3 191 69.1
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 6.3e-60 234.6 153 81.7
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 8.2e-60 234.2 171 74.9
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 8.2e-60 234.2 150 82.0
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 1.4e-59 233.4 196 68.4
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 4.1e-59 231.9 156 80.1
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 4.1e-59 231.9 190 72.1
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 6.9e-59 231.1 138 88.4
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 9.1e-59 230.7 150 80.0
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 4.5e-58 228.4 137 88.3
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 1.0e-57 227.3 197 68.5
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.0e-57 227.3 142 85.9
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.0e-57 227.3 188 68.6
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 1.3e-57 226.9 148 80.4
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 5.0e-57 224.9 187 70.6
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 6.5e-57 224.6 179 70.4
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 8.5e-57 224.2 189 69.3
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 8.5e-57 224.2 194 68.0
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.1e-56 223.8 164 72.6
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 1.9e-56 223.0 188 69.7
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.9e-56 223.0 187 67.9
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 3.2e-56 222.2 142 82.4
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 5.5e-56 221.5 136 84.6
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 5.5e-56 221.5 142 81.7
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 7.2e-56 221.1 145 81.4
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 9.4e-56 220.7 142 81.7
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 9.4e-56 220.7 142 81.7
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 9.4e-56 220.7 194 67.5
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.6e-55 219.9 150 76.7
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.6e-55 219.9 142 81.7
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 1.6e-55 219.9 193 67.4
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 2.1e-55 219.5 186 67.7
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 2.1e-55 219.5 195 68.2
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-55 219.5 196 67.9
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 2.7e-55 219.2 140 83.6
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.7e-55 219.2 189 68.3
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.6e-55 218.8 148 78.4
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 3.6e-55 218.8 188 67.0
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 3.6e-55 218.8 185 67.6
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.6e-55 218.8 150 76.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.6e-55 218.8 193 66.8
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 4.7e-55 218.4 186 67.2
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 4.7e-55 218.4 142 83.1
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 4.7e-55 218.4 142 83.1
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 4.7e-55 218.4 189 66.7
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 4.7e-55 218.4 185 68.1
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 6.1e-55 218.0 185 69.2
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 7.9e-55 217.6 139 81.3
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 7.9e-55 217.6 194 67.5
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 1.0e-54 217.2 150 78.7
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.0e-54 217.2 145 80.7
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 1.4e-54 216.9 146 79.5
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.4e-54 216.9 161 72.0
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.3e-54 216.1 137 83.2
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.3e-54 216.1 134 83.6
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 3.0e-54 215.7 138 82.6
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 3.0e-54 215.7 188 67.0
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 3.0e-54 215.7 188 66.5
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 3.9e-54 215.3 188 66.0
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 5.1e-54 214.9 186 66.7
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 5.1e-54 214.9 134 82.8
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 6.7e-54 214.5 186 66.7
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 6.7e-54 214.5 188 68.1
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 6.7e-54 214.5 188 68.1
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 6.7e-54 214.5 188 68.1
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 6.7e-54 214.5 193 67.4
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 6.7e-54 214.5 141 80.1
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 6.7e-54 214.5 150 78.7
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 8.8e-54 214.2 142 79.6
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.1e-53 213.8 140 80.0
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 1.1e-53 213.8 188 68.1
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.1e-53 213.8 137 82.5
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 1.1e-53 213.8 134 85.1
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 1.5e-53 213.4 139 79.1
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 1.5e-53 213.4 193 67.4
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.5e-53 213.4 184 66.3
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.5e-53 213.4 143 77.6
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 2.0e-53 213.0 154 73.4
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.0e-53 213.0 188 64.9
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.6e-53 212.6 142 81.7
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 3.3e-53 212.2 183 66.7
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.3e-53 212.2 140 80.7
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 3.3e-53 212.2 192 65.1
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.4e-53 211.8 187 67.4
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 4.4e-53 211.8 137 80.3
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 4.4e-53 211.8 141 80.9
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 4.4e-53 211.8 146 76.7
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 7.4e-53 211.1 192 65.1
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 9.7e-53 210.7 137 83.9
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.7e-52 209.9 190 64.2
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.2e-52 209.5 157 73.2
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 2.2e-52 209.5 177 67.2
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 2.2e-52 209.5 141 79.4
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.8e-52 209.1 160 75.0
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.7e-52 208.8 137 80.3
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 3.7e-52 208.8 136 80.9
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 3.7e-52 208.8 190 64.2
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.7e-52 208.8 187 66.8
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 4.8e-52 208.4 157 73.9
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 6.3e-52 208.0 140 79.3
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 6.3e-52 208.0 187 65.2
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.1e-51 207.2 134 82.1
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 1.8e-51 206.5 191 63.9
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 5.3e-51 204.9 187 64.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 9.1e-51 204.1 144 76.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 1.2e-50 203.8 147 72.8
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 2.6e-50 202.6 111 95.5
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 3.5e-50 202.2 139 79.9
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 4.5e-50 201.8 142 76.8
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 4.5e-50 201.8 136 79.4
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 1.7e-49 199.9 147 74.1
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 2.9e-49 199.1 188 62.8
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 3.8e-49 198.7 193 62.2
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.5e-48 196.1 112 90.2
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 9.4e-48 194.1 184 60.3
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 9.4e-48 194.1 111 89.2
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 9.4e-48 194.1 111 89.2
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 1.2e-47 193.7 134 77.6
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.2e-47 193.7 153 71.2
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 4.7e-47 191.8 173 65.9
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 4.7e-47 191.8 111 90.1
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 8.8e-46 187.6 136 69.9
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 1.1e-45 187.2 109 86.2
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 3.3e-45 185.7 109 87.2
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.3e-44 181.4 192 58.9
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 8.2e-44 181.0 169 63.3
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.4e-43 180.3 108 88.0
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.4e-43 180.3 192 58.3
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 1.4e-43 180.3 108 82.4
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 7.0e-43 177.9 112 83.0
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 4.5e-42 175.3 155 64.5
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.5e-42 175.3 141 67.4
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.7e-41 173.3 136 67.6
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 1.5e-40 170.2 165 63.6
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 7.2e-40 167.9 139 62.6
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 7.2e-40 167.9 343 39.7
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 2.2e-36 156.4 110 71.8
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 2.8e-36 156.0 108 71.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 4.8e-36 155.2 154 59.7
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 1.8e-35 153.3 136 64.7
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 4.1e-35 152.1 119 67.2
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 3.0e-30 136.0 99 71.7
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 9.8e-29 131.0 141 57.4
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 4.8e-28 128.6 107 58.9
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 6.6e-25 118.2 136 50.0
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.6e-23 113.6 91 68.1
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 2.8e-23 112.8 99 64.6
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 6.1e-23 111.7 77 77.9
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 1.4e-22 110.5 86 68.6
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 5.2e-22 108.6 87 70.1
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 3.4e-21 105.9 87 69.0
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 3.4e-21 105.9 87 69.0
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 2.5e-16 89.7 86 58.1
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.7e-12 77.0 46 80.4
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 1.7e-12 77.0 44 88.6
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 2.2e-12 76.6 46 84.8
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 4.3e-08 62.4 38 78.9


User provided reference genes

Program Settings