Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1744.9 894 100.0
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1637.9 886 95.0
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1612.0 886 93.9
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1610.1 886 94.0
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1607.4 909 91.7
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1601.6 910 91.5
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1398.3 896 81.1
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1396.7 897 80.5
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1394.0 898 81.6
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1360.5 888 77.6
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1323.1 892 76.2
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1322.8 884 76.2
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1306.2 897 74.0
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1302.7 932 71.7
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1299.3 905 74.1
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1298.9 873 75.0
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1291.2 890 73.9
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1285.8 889 73.6
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1285.8 889 73.8
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1282.7 917 71.2
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1281.9 889 73.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1278.8 889 73.5
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1277.7 892 73.2
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1274.6 892 74.3
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1273.8 894 73.7
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1268.1 889 72.4
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1267.3 969 68.1
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1266.1 888 73.8
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1266.1 893 72.9
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1261.1 889 71.9
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1257.3 883 73.2
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 889 72.8
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1250.7 905 72.9
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1248.8 890 71.3
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1237.2 906 71.6
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1234.6 892 71.4
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1228.8 887 71.6
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1221.1 892 70.6
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1212.2 884 69.9
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1211.1 892 70.2
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 885 69.8
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1208.4 890 69.7
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1204.1 894 70.0
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1203.7 891 68.6
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1202.2 890 69.8
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1200.7 893 70.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1199.5 885 69.4
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1196.0 887 68.8
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 893 68.6
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1194.9 892 69.3
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1192.9 889 68.5
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1191.8 893 68.0
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1191.8 903 68.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1191.8 889 69.5
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1189.9 889 69.9
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1187.9 889 69.7
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1186.4 888 68.8
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1184.9 917 68.0
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1182.9 916 67.4
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1179.9 883 68.2
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1178.3 902 67.7
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1171.4 889 67.6
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1169.8 890 67.3
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 919 66.6
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1169.1 891 69.4
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1168.3 889 67.4
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1167.9 932 66.6
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1165.6 906 69.2
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1165.2 793 73.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1165.2 902 67.4
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1164.4 888 67.2
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1164.1 900 66.9
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1162.5 911 66.2
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1162.5 754 76.7
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1160.6 908 66.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1160.6 899 66.1
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1159.8 906 68.3
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1157.5 889 67.0
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1154.0 891 66.7
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1151.7 891 67.6
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1145.6 918 65.1
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1143.3 890 69.1
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1141.7 894 65.9
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1140.9 895 66.3
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 892 68.0
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 901 66.8
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1132.5 891 66.0
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1130.5 897 66.9
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1130.2 889 66.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1124.4 891 65.3
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1121.7 883 65.0
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 919 64.2
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1110.1 904 66.0
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1109.0 915 65.6
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1109.0 895 64.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1107.0 913 65.3
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1104.7 886 65.8
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1103.6 887 65.6
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1100.9 917 65.5
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1100.5 907 64.5
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1099.3 912 63.8
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1097.8 907 64.4
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1097.0 901 65.0
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1091.3 908 64.4
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1089.7 907 64.8
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1086.6 902 65.0
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1086.2 906 61.9
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1082.0 913 63.2
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1081.6 891 64.6
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1077.8 900 64.0
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1077.8 890 63.4
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.2e-311 1072.8 795 69.6
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 1.6e-310 1069.3 898 62.6
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 1.5e-308 1062.8 884 62.9
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 4.3e-308 1061.2 772 69.7
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 2.1e-307 1058.9 814 67.2
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.4e-303 1046.2 842 65.2
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 1.8e-301 1039.3 944 59.1
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 3.2e-295 1018.5 924 60.1
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 7.9e-294 1013.8 873 63.3
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.3e-293 1012.3 889 61.6
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.2e-287 991.9 906 59.7
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.2e-286 989.9 887 59.5
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 7.9e-286 987.3 829 63.0
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 5.9e-281 971.1 614 77.5
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.5e-276 956.4 978 54.9
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.8e-275 951.4 919 56.0
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.3e-275 951.0 911 56.3
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 6.5e-272 941.0 590 77.8
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.1e-266 923.7 801 59.7
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.4e-266 922.5 888 57.0
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.3e-256 889.4 932 54.8
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 3.3e-255 885.6 792 57.4
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.0e-253 880.6 895 53.2
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.5e-247 859.4 872 55.2
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 2.8e-246 855.9 875 52.9
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 4.0e-245 852.0 898 52.8
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 4.1e-242 842.0 800 57.4
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 3.2e-234 815.8 798 54.1
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.1e-231 807.4 595 71.4
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.5e-231 807.0 797 54.2
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.8e-230 802.7 613 64.9
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 2.9e-211 739.6 572 61.9
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 3.9e-208 729.2 585 59.0
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 9.0e-205 718.0 782 48.6
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 5.6e-199 698.7 589 56.4
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 9.0e-197 691.4 636 59.3
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 4.6e-193 679.1 636 58.2
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 4.5e-188 662.5 616 52.9
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.9e-170 604.0 589 55.3
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 2.0e-167 594.0 895 41.3
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 6.8e-144 515.8 567 47.1
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.1e-141 508.4 537 51.8
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 5.2e-136 489.6 422 60.7
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 1.0e-115 422.2 588 38.1
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 8.9e-112 409.1 513 46.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 4.4e-111 406.8 401 58.4
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 4.0e-104 383.6 507 44.8
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 7.6e-95 352.8 266 64.7
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 6.4e-94 349.7 698 31.7
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 2.1e-84 318.2 225 67.6
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 4.9e-78 297.0 266 57.1
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 6.5e-70 270.0 175 72.0
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.9e-69 268.5 520 30.8
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 7.9e-60 236.5 156 75.0
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 4.8e-57 227.3 528 28.4
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 2.5e-37 161.8 189 51.9
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 7.2e-29 133.7 203 39.4
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 8.6e-22 110.2 74 75.7
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 9.5e-21 106.7 65 75.4
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.4e-19 102.8 125 49.6
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.2e-18 99.8 71 63.4
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 4.7e-12 77.8 74 58.1
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 3.1e-11 75.1 175 29.1


User provided reference genes

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