Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0264351 Rosa chinensis HOM05D003462 ORTHO05D003946 4.6e-25 117.1 59 100.0
RcHm_v2.0_Chr7g0184031 Rosa chinensis HOM05D003462 ORTHO05D003946 2.2e-14 81.6 44 93.2
RcHm_v2.0_Chr7g0184041 Rosa chinensis HOM05D003462 ORTHO05D003946 2.2e-14 81.6 44 93.2
FAN08G2364 Fragaria x ananassa HOM05D003462 ORTHO05D003946 1.1e-13 79.3 44 88.6
MD06G1207100 Malus domestica HOM05D003462 ORTHO05D003946 1.4e-13 79.0 44 86.4
MD14G1217600 Malus domestica HOM05D003462 ORTHO05D003946 1.4e-13 79.0 44 86.4
FvH4_5g13111 Fragaria vesca HOM05D003462 ORTHO05D003946 2.4e-13 78.2 44 86.4
FvH4_5g13110 Fragaria vesca HOM05D003462 ORTHO05D003946 5.3e-13 77.0 44 86.4
FAN18G1062 Fragaria x ananassa HOM05D003462 ORTHO05D003946 5.3e-13 77.0 44 86.4
Prupe.5G211500 Prunus persica HOM05D003462 ORTHO05D003946 9.1e-13 76.3 44 81.8
Gohir.A09G244100 Gossypium hirsutum HOM05D003462 ORTHO05D003946 3.4e-12 74.3 44 75.0
Duzib084G0277 Durio zibethinus HOM05D003462 ORTHO05D003946 4.5e-12 73.9 44 75.0
Gohir.D09G245000 Gossypium hirsutum HOM05D003462 ORTHO05D003946 4.5e-12 73.9 44 75.0
Thecc.03G111900 Theobroma cacao HOM05D003462 ORTHO05D003946 5.9e-12 73.6 44 72.7
Duzib205G0774 Durio zibethinus HOM05D003462 ORTHO05D003946 7.7e-12 73.2 44 75.0
TWI81G0217 Tripterygium wilfordii HOM05D003462 ORTHO05D003946 7.7e-12 73.2 44 79.5
Atru.chr9.644 Acer truncatum HOM05D003462 ORTHO05D003946 1.3e-11 72.4 44 79.5
ATR0691G201 Amborella trichopoda HOM05D003462 ORTHO05D003946 1.3e-11 72.4 44 77.3
Cpa.g.sc3.203 Carica papaya HOM05D003462 ORTHO05D003946 1.3e-11 72.4 44 77.3
Gorai.006G269300 Gossypium raimondii HOM05D003462 ORTHO05D003946 2.2e-11 71.6 44 72.7
GSVIVG01008180001 Vitis vinifera HOM05D003462 ORTHO05D003946 2.2e-11 71.6 44 79.5
Aqoxy3G00588 Aquilegia oxysepala HOM05D003462 ORTHO05D003946 2.9e-11 71.2 44 75.0
COL.COLO4_28809 Corchorus olitorius HOM05D003462 ORTHO05D003946 2.9e-11 71.2 44 70.5
Ciclev10019214m.g Citrus clementina HOM05D003462 ORTHO05D003946 3.8e-11 70.9 44 72.7
Manes.01G024300 Manihot esculenta HOM05D003462 ORTHO05D003946 5.0e-11 70.5 44 75.0
Lj4g0004217 Lotus japonicus HOM05D003462 ORTHO05D003946 6.5e-11 70.1 44 75.0
arahy.Tifrunner.gnm1.ann1.8883SE Arachis hypogaea HOM05D003462 ORTHO05D003946 8.5e-11 69.7 44 75.0
arahy.Tifrunner.gnm1.ann1.HJ4MYC Arachis hypogaea HOM05D003462 ORTHO05D003946 8.5e-11 69.7 44 75.0
MELO3C017261.2 Cucumis melo HOM05D003462 ORTHO05D003946 8.5e-11 69.7 44 70.5
CsaV3_1G003220 Cucumis sativus L. HOM05D003462 ORTHO05D003946 8.5e-11 69.7 44 70.5
Migut.D01480 Erythranthe guttata HOM05D003462 ORTHO05D003946 8.5e-11 69.7 44 75.0
TAR371G0026 Trochodendron aralioides HOM05D003462 ORTHO05D003946 8.5e-11 69.7 44 75.0
CSS0003044 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.1e-10 69.3 44 75.0
Nn4g23600 Nelumbo nucifera HOM05D003462 ORTHO05D003946 1.1e-10 69.3 44 72.7
Phvul.009G204100 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 1.1e-10 69.3 44 75.0
Psat4g045480 Pisum sativum HOM05D003462 ORTHO05D003946 1.1e-10 69.3 44 75.0
Cfa017729 Carpinus fangiana HOM05D003462 ORTHO05D003946 1.4e-10 68.9 44 72.7
Lj5A138T59 Lonicera japonica HOM05D003462 ORTHO05D003946 1.4e-10 68.9 44 70.5
CSS0028580 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.9e-10 68.6 44 75.0
CSS0029569 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 1.9e-10 68.6 44 75.0
Glyma.17G082700 Glycine max HOM05D003462 ORTHO05D003946 1.9e-10 68.6 44 75.0
ATR0691G062 Amborella trichopoda HOM05D003462 ORTHO05D003946 2.5e-10 68.2 44 72.7
Ca_02712_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 2.5e-10 68.2 44 75.0
Medtr4g112820 Medicago truncatula HOM05D003462 ORTHO05D003946 2.5e-10 68.2 45 68.9
QL10p021514 Quercus lobata HOM05D003462 ORTHO05D003946 2.5e-10 68.2 44 70.5
TPR.G2020 Trifolium pratense HOM05D003462 ORTHO05D003946 2.5e-10 68.2 44 72.7
MSTRG.4505 Avicennia marina HOM05D003462 ORTHO05D003946 3.2e-10 67.8 44 72.7
CSS0013858 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.2e-10 67.8 44 75.0
CSS0048759 Camellia sinensis var. sinensis HOM05D003462 ORTHO05D003946 3.2e-10 67.8 44 75.0
CAN.G982.30 Capsicum annuum HOM05D003462 ORTHO05D003946 3.2e-10 67.8 46 67.4
Ca_21746_v3 Cicer arietinum L. HOM05D003462 ORTHO05D003946 3.2e-10 67.8 44 72.7
Dinv36836 Davidia involucrata HOM05D003462 ORTHO05D003946 3.2e-10 67.8 44 72.7
Lj1g0015888 Lotus japonicus HOM05D003462 ORTHO05D003946 3.2e-10 67.8 44 72.7
Sc24g0002690 Simmondsia chinensis HOM05D003462 ORTHO05D003946 3.2e-10 67.8 44 70.5
Migut.D01481 Erythranthe guttata HOM05D003462 ORTHO05D003946 4.2e-10 67.4 44 72.7
Glyma.05G017301 Glycine max HOM05D003462 ORTHO05D003946 5.5e-10 67.0 44 72.7
Nitab4.5_0000646g0270 Nicotiana tabacum HOM05D003462 ORTHO05D003946 5.5e-10 67.0 46 67.4
Nitab4.5_0002805g0140 Nicotiana tabacum HOM05D003462 ORTHO05D003946 5.5e-10 67.0 46 67.4
Potri.015G047500 Populus trichocarpa HOM05D003462 ORTHO05D003946 5.5e-10 67.0 44 70.5
PGR083G2784 Punica granatum HOM05D003462 ORTHO05D003946 5.5e-10 67.0 44 68.2
Sabra15G0079500 Salix brachista HOM05D003462 ORTHO05D003946 5.5e-10 67.0 44 70.5
THA.LOC104812124 Tarenaya hassleriana HOM05D003462 ORTHO05D003946 5.5e-10 67.0 44 70.5
Actinidia35059 Actinidia chinensis HOM05D003462 ORTHO05D003946 7.2e-10 66.6 44 72.7
PSO017G3345 Papaver somniferum HOM05D003462 ORTHO05D003946 7.2e-10 66.6 44 72.7
AUR62032156 Chenopodium quinoa HOM05D003462 ORTHO05D003946 9.4e-10 66.2 44 65.9
AUR62036912 Chenopodium quinoa HOM05D003462 ORTHO05D003946 9.4e-10 66.2 44 65.9
Dinv38623 Davidia involucrata HOM05D003462 ORTHO05D003946 9.4e-10 66.2 44 72.7
ECA246G4431 Erigeron canadensis HOM05D003462 ORTHO05D003946 9.4e-10 66.2 44 68.2
Lalb_Chr12g0197421 Lupinus albus HOM05D003462 ORTHO05D003946 9.4e-10 66.2 44 70.5
Medtr2g058970 Medicago truncatula HOM05D003462 ORTHO05D003946 9.4e-10 66.2 44 72.7
Sed0016449 Sechium edule HOM05D003462 ORTHO05D003946 9.4e-10 66.2 44 70.5
Eucgr.K02831 Eucalyptus grandis HOM05D003462 ORTHO05D003946 1.2e-09 65.9 44 65.9
Medtr4g112860 Medicago truncatula HOM05D003462 ORTHO05D003946 1.2e-09 65.9 44 70.5
Solyc03g114640.4 Solanum lycopersicum HOM05D003462 ORTHO05D003946 1.2e-09 65.9 46 67.4
Sopen03g033710 Solanum pennellii HOM05D003462 ORTHO05D003946 1.2e-09 65.9 46 67.4
Oeu031925.1 Olea europaea HOM05D003462 ORTHO05D003946 1.6e-09 65.5 44 75.0
Peaxi162Scf00017g03131 Petunia axillaris HOM05D003462 ORTHO05D003946 1.6e-09 65.5 46 65.2
Psat1g028640 Pisum sativum HOM05D003462 ORTHO05D003946 1.6e-09 65.5 44 70.5
QL10p021433 Quercus lobata HOM05D003462 ORTHO05D003946 1.6e-09 65.5 44 68.2
Rhsim12G0146800 Rhododendron simsii HOM05D003462 ORTHO05D003946 1.6e-09 65.5 44 70.5
Glyma.04G158100 Glycine max HOM05D003462 ORTHO05D003946 2.1e-09 65.1 44 70.5
Lsat_1_v5_gn_5_24941 Lactuca sativa HOM05D003462 ORTHO05D003946 2.1e-09 65.1 44 63.6
Lsat_1_v5_gn_5_24760 Lactuca sativa HOM05D003462 ORTHO05D003946 2.7e-09 64.7 44 65.9
Hund02540 Selenicereus undatus HOM05D003462 ORTHO05D003946 2.7e-09 64.7 44 63.6
TPR.G1988 Trifolium pratense HOM05D003462 ORTHO05D003946 2.7e-09 64.7 44 70.5
Phvul.003G181400 Phaseolus vulgaris HOM05D003462 ORTHO05D003946 3.6e-09 64.3 44 70.5
ECA246G0130 Erigeron canadensis HOM05D003462 ORTHO05D003946 4.7e-09 63.9 44 63.6
TPR.G15309 Trifolium pratense HOM05D003462 ORTHO05D003946 4.7e-09 63.9 44 70.5
CARHR067120 Cardamine hirsuta HOM05D003462 ORTHO05D003946 6.1e-09 63.5 44 63.6
Lsat_1_v5_gn_5_24441 Lactuca sativa HOM05D003462 ORTHO05D003946 6.1e-09 63.5 44 63.6
PSO478G2116 Papaver somniferum HOM05D003462 ORTHO05D003946 6.1e-09 63.5 44 70.5
Aa31LG4G4310 Aethionema arabicum HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 65.9
AL2G33830 Arabidopsis lyrata HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 63.6
BcaC08g46829 Brassica carinata HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 63.6
A07p39860 Brassica napus HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 63.6
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 7.9e-09 63.2 44 63.6
BolC6t39846H Brassica oleracea HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 63.6
BraA07t31532Z Brassica rapa HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 63.6
CiPaw.15G117200 Carya illinoinensis HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 65.9
Sp5g29190 Schrenkiella parvula HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 63.6
Zm00001eb189850 Zea mays HOM05D003462 ORTHO05D003946 7.9e-09 63.2 44 68.2
AT1G73990 Arabidopsis thaliana HOM05D003462 ORTHO05D003946 1.0e-08 62.8 44 63.6
CDE06G1115 Ceratophyllum demersum HOM05D003462 ORTHO05D003946 1.0e-08 62.8 44 63.6
Hma1.2p1_0744F.1_g211701 Hydrangea macrophylla HOM05D003462 ORTHO05D003946 1.0e-08 62.8 44 70.5
arahy.Tifrunner.gnm1.ann1.V9YTQ9 Arachis hypogaea HOM05D003462 ORTHO05D003946 1.4e-08 62.4 45 64.4
Carub.0002s2077 Capsella rubella HOM05D003462 ORTHO05D003946 1.4e-08 62.4 44 63.6
VMungo1215G0716 Vigna mungo HOM05D003462 ORTHO05D003946 1.4e-08 62.4 44 68.2
EL10Ac5g11203 Beta vulgaris HOM05D003462 ORTHO05D003946 1.8e-08 62.0 44 56.8
ClCG06G015340 Citrullus lanatus HOM05D003462 ORTHO05D003946 1.8e-08 62.0 44 61.4
HanXRQChr05g0157881 Helianthus annuus HOM05D003462 ORTHO05D003946 1.8e-08 62.0 65 44.6
Lalb_Chr23g0274061 Lupinus albus HOM05D003462 ORTHO05D003946 1.8e-08 62.0 44 63.6
Os02g0728100 Oryza sativa ssp. japonica HOM05D003462 ORTHO05D003946 1.8e-08 62.0 44 65.9
Hund09973 Selenicereus undatus HOM05D003462 ORTHO05D003946 1.8e-08 62.0 44 68.2
Thhalv10018225m.g Eutrema salsugineum HOM05D003462 ORTHO05D003946 2.3e-08 61.6 44 61.4
HanXRQChr05g0157841 Helianthus annuus HOM05D003462 ORTHO05D003946 2.3e-08 61.6 44 61.4
arahy.Tifrunner.gnm1.ann1.MSU6B8 Arachis hypogaea HOM05D003462 ORTHO05D003946 3.0e-08 61.2 45 62.2
MSTRG.9572 Avicennia marina HOM05D003462 ORTHO05D003946 3.0e-08 61.2 44 59.1
Medtr5g082990 Medicago truncatula HOM05D003462 ORTHO05D003946 3.0e-08 61.2 42 64.3
CANSAT80G0024 Cannabis sativa HOM05D003462 ORTHO05D003946 6.7e-08 60.1 43 60.5
Medtr4g130360 Medicago truncatula HOM05D003462 ORTHO05D003946 6.7e-08 60.1 46 63.0
SalBow1G8183 Salvia bowleyana HOM05D003462 ORTHO05D003946 6.7e-08 60.1 44 61.4
HPP92_017961 Vanilla planifolia HOM05D003462 ORTHO05D003946 8.8e-08 59.7 44 61.4
Cc04_g07970 Coffea canephora HOM05D003462 ORTHO05D003946 2.6e-07 58.2 44 61.4
SGA_v2.0_scaffold171G38939 Striga asiatica HOM05D003462 ORTHO05D003946 3.3e-07 57.8 44 54.5
DCAR_010190 Daucus carota HOM05D003462 ORTHO05D003946 5.7e-07 57.0 44 59.1
unitig_22.g6154 Utricularia gibba HOM05D003462 ORTHO05D003946 9.7e-07 56.2 44 56.8
Haze_18545 Corylus avellana HOM05D003462 ORTHO05D003946 2.2e-06 55.1 69 46.4
SalBow1G4644 Salvia bowleyana HOM05D003462 ORTHO05D003946 2.8e-06 54.7 44 56.8
HanXRQChr05g0157891 Helianthus annuus HOM05D003462 ORTHO05D003946 6.3e-06 53.5 44 47.7


User provided reference genes

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