Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 2.3e-53 211.8 99 100.0
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 3.1e-42 174.9 97 87.6
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.1e-42 174.9 97 87.6
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.5e-41 171.4 98 85.7
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.5e-41 171.0 97 86.6
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 3.0e-37 158.3 89 82.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 8.8e-37 156.8 92 82.6
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 3.4e-36 154.8 89 79.8
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 8.3e-35 150.2 92 80.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.4e-34 149.4 94 71.3
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.4e-34 148.7 134 60.4
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 4.1e-34 147.9 90 78.9
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 4.1e-34 147.9 82 79.3
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 5.4e-34 147.5 78 84.6
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.2e-33 146.4 92 77.2
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.2e-33 146.4 79 82.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 3.5e-33 144.8 92 73.9
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 5.9e-33 144.1 77 87.0
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.0e-32 143.3 78 82.1
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.7e-32 142.5 77 79.2
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 5.0e-32 141.0 94 69.1
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 6.6e-32 140.6 86 73.3
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 6.6e-32 140.6 72 86.1
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.5e-31 139.4 93 69.9
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.5e-31 139.4 82 79.3
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 2.5e-31 138.7 75 81.3
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.5e-31 138.7 96 68.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 5.6e-31 137.5 73 83.6
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 7.3e-31 137.1 105 66.7
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 7.3e-31 137.1 84 75.0
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.2e-30 136.3 91 71.4
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.2e-30 136.3 73 84.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.6e-30 136.0 75 81.3
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 1.6e-30 136.0 98 67.3
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.1e-30 135.6 75 85.3
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.8e-30 135.2 97 69.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.8e-30 135.2 91 72.5
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.8e-30 135.2 89 71.9
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 6.1e-30 134.0 91 71.4
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 8.0e-30 133.7 75 78.7
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 8.0e-30 133.7 97 67.0
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 8.0e-30 133.7 91 70.3
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.4e-29 132.9 94 68.1
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.8e-29 132.5 75 77.3
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.8e-29 132.5 89 71.9
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.8e-29 132.5 93 66.7
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 4.0e-29 131.3 76 80.3
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 4.0e-29 131.3 56 100.0
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 4.0e-29 131.3 93 66.7
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.8e-29 130.6 100 66.0
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 8.9e-29 130.2 74 78.4
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.2e-28 129.8 100 65.0
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.2e-28 129.8 90 67.8
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.0e-28 129.0 85 70.6
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.6e-28 128.6 91 68.1
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 4.4e-28 127.9 77 80.5
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 7.5e-28 127.1 74 81.1
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.3e-27 126.3 91 64.8
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.7e-27 125.9 88 70.5
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.7e-27 125.9 74 81.1
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 1.7e-27 125.9 74 81.1
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 2.2e-27 125.6 74 81.1
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 2.2e-27 125.6 90 71.1
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.2e-27 125.6 74 81.1
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.2e-27 125.6 89 66.3
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.9e-27 125.2 74 79.7
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 2.9e-27 125.2 85 68.2
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.9e-27 125.2 75 77.3
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 6.4e-27 124.0 74 81.1
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 6.4e-27 124.0 91 68.1
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 6.4e-27 124.0 93 67.7
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 8.3e-27 123.6 93 61.3
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.1e-26 123.2 97 64.9
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.1e-26 123.2 99 66.7
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.4e-26 122.9 76 76.3
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.4e-26 122.9 86 64.0
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.4e-26 122.9 91 70.3
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.4e-26 122.9 91 70.3
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.8e-26 122.5 74 79.7
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.8e-26 122.5 74 79.7
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.8e-26 122.5 74 79.7
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.8e-26 122.5 74 79.7
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 2.4e-26 122.1 74 77.0
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.2e-26 121.7 80 75.0
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 4.1e-26 121.3 74 78.4
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 4.1e-26 121.3 72 76.4
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 7.0e-26 120.6 74 79.7
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 9.2e-26 120.2 82 68.3
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.2e-25 119.8 74 78.4
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 1.2e-25 119.8 74 78.4
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 2.0e-25 119.0 74 77.0
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 3.5e-25 118.2 74 77.0
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 3.5e-25 118.2 74 74.3
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 4.6e-25 117.9 74 74.3
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 4.6e-25 117.9 105 58.1
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 7.8e-25 117.1 74 77.0
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.0e-24 116.7 77 71.4
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.3e-24 115.5 74 71.6
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 3.0e-24 115.2 80 62.5
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 3.9e-24 114.8 73 72.6
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.5e-23 112.8 76 65.8
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 4.3e-23 111.3 86 65.1
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 5.6e-23 110.9 71 69.0
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.1e-21 106.7 93 59.1
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.1e-21 105.1 94 59.6
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 4.0e-21 104.8 74 63.5
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.3e-19 99.8 75 61.3
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.7e-19 99.4 73 61.6
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 3.7e-19 98.2 73 61.6
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 4.9e-19 97.8 74 67.6
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 4.9e-19 97.8 73 61.6
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 6.4e-19 97.4 80 53.8
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.4e-18 96.3 73 61.6
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.9e-18 95.9 72 62.5
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.2e-17 93.2 45 100.0
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 5.2e-13 77.8 58 65.5
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 1.5e-12 76.3 41 85.4
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 5.4e-10 67.8 47 63.8
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 9.2e-10 67.0 57 59.6
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.6e-09 66.2 47 61.7
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 3.9e-08 61.6 70 44.3
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 8.6e-08 60.5 46 58.7
vmacro05756 Vaccinium macrocarpon HOM05D060962 ORTHO05D005551 8.6e-08 60.5 47 55.3
SHI04903 Sapria himalayana HOM05D004882 ORTHO05D005551 1.9e-07 59.3 49 53.1
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 1.6e-06 56.2 64 46.9
Nn8g41058 Nelumbo nucifera HOM05D004882 ORTHO05D005551 3.6e-06 55.1 50 54.0


User provided reference genes

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