Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 0.0e+00 1249.6 673 100.0
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-290 1002.7 678 82.9
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.8e-290 1002.3 678 82.7
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-287 992.6 671 82.3
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.6e-286 989.2 681 81.5
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-285 986.1 674 82.0
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 6.1e-214 748.0 694 66.6
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.4e-186 656.4 692 60.7
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 5.4e-162 575.5 480 71.7
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 5.3e-149 532.3 703 53.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 4.5e-148 529.3 695 52.5
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 3.5e-145 519.6 701 52.5
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.9e-135 487.3 699 51.8
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 2.9e-131 473.4 675 51.3
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.7e-118 431.0 691 47.2
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 2.8e-118 430.3 692 45.2
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.4e-114 417.9 692 46.7
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 2.1e-113 414.1 680 45.6
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.8e-112 411.0 711 43.5
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.4e-109 401.4 690 45.4
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.0e-104 385.2 701 44.1
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 1.7e-102 377.9 656 47.4
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.2e-100 371.7 672 44.8
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.2e-100 371.7 677 42.5
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.5e-100 369.8 747 40.6
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.3e-99 368.2 680 44.7
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 6.5e-99 365.9 676 41.4
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 5.2e-96 356.3 669 41.4
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 8.3e-94 349.0 730 39.6
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.1e-93 348.6 669 41.7
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.0e-91 342.0 694 40.6
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.0e-91 342.0 778 38.2
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 4.2e-90 336.7 679 40.6
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 4.2e-90 336.7 685 41.3
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 9.4e-90 335.5 725 39.4
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.6e-89 334.7 565 44.2
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 4.7e-89 333.2 671 40.7
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 1.2e-87 328.6 669 40.8
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.2e-87 328.6 627 41.3
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 2.6e-87 327.4 724 38.7
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.4e-87 327.0 679 42.7
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.4e-87 326.6 714 39.5
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 5.7e-87 326.2 672 41.8
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.3e-86 325.1 686 38.6
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.8e-86 323.9 687 39.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 3.7e-86 323.6 750 38.5
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 5.4e-85 319.7 692 38.9
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 4.5e-84 316.6 723 38.2
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.7e-83 314.7 512 46.1
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 2.9e-83 313.9 760 36.2
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 5.6e-82 309.7 533 46.5
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.8e-80 304.7 688 38.5
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 8.9e-80 302.4 664 39.8
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 9.8e-79 298.9 777 35.5
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.6e-76 291.6 592 43.2
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.5e-76 290.4 668 37.6
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 7.8e-76 289.3 777 35.8
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 7.3e-74 282.7 600 39.7
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 8.3e-70 269.2 686 36.7
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.4e-69 268.5 672 37.5
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 2.0e-68 264.6 678 36.0
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.3e-67 261.2 688 34.3
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 6.6e-67 259.6 686 36.4
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.5e-66 258.5 695 34.4
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 9.5e-66 255.8 701 34.8
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.2e-65 255.4 698 34.5
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 2.8e-65 254.2 686 34.5
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 3.6e-65 253.8 540 40.4
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.2e-63 248.8 695 34.0
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 7.1e-61 239.6 604 35.9
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 1.7e-59 235.0 666 34.4
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.7e-59 235.0 665 33.8
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 3.0e-59 234.2 693 34.5
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.1e-58 232.3 595 37.1
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 9.5e-58 229.2 766 32.9
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 1.4e-56 225.3 705 34.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 3.1e-56 224.2 683 34.4
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 8.9e-56 222.6 666 34.8
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 5.8e-55 219.9 791 31.4
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.7e-54 218.4 508 38.6
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.2e-54 218.0 488 38.3
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 8.4e-54 216.1 719 33.9
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.4e-53 214.5 689 33.1
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 4.1e-53 213.8 664 33.0
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 7.1e-53 213.0 711 34.7
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.2e-52 212.2 628 36.3
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 3.5e-52 210.7 673 34.9
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 4.6e-52 210.3 611 36.2
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 6.0e-52 209.9 697 34.7
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 1.3e-51 208.8 707 33.4
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.7e-51 208.4 673 34.5
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 8.6e-51 206.1 673 34.3
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 8.6e-51 206.1 712 33.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.5e-50 205.3 710 33.2
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.5e-50 205.3 686 31.9
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.6e-49 201.8 673 34.3
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 2.1e-49 201.4 335 41.8
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.6e-49 200.7 189 60.3
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.1e-48 199.1 659 33.1
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.1e-48 199.1 519 38.3
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 5.2e-48 196.8 414 41.5
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 5.2e-48 196.8 675 31.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 9.3e-45 186.0 114 88.6
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 6.0e-44 183.3 179 61.5
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 2.3e-43 181.4 691 31.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 9.6e-42 176.0 722 28.7
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 2.8e-41 174.5 709 30.2
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 8.1e-41 172.9 243 47.7
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 1.1e-40 172.6 164 61.6
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 2.0e-39 168.3 339 40.4
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 6.7e-35 153.3 677 29.8
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 8.4e-30 136.3 477 35.0
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 2.1e-28 131.7 527 31.3
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 6.0e-28 130.2 512 33.4
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.3e-27 129.0 723 26.4
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.4e-24 118.2 393 33.3
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 5.8e-23 113.6 661 26.8
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.2e-21 107.5 415 31.8
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 5.1e-19 100.5 486 28.4
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 6.7e-19 100.1 480 28.1
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.4e-16 92.4 45 100.0
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 4.5e-15 87.4 482 25.9
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-14 85.9 149 43.6
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.3e-09 69.3 68 54.4
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.1e-08 64.3 241 31.1
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 4.1e-08 64.3 64 53.1
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.1e-08 64.3 109 44.0
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 1.5e-07 62.4 69 50.7


User provided reference genes

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