Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0244411 Rosa chinensis HOM05D006341 ORTHO05D000377 6.9e-292 1006.5 490 100.0
RcHm_v2.0_Chr6g0244441 Rosa chinensis HOM05D006341 ORTHO05D000377 4.8e-269 930.6 490 93.1
FvH4_2g01620 Fragaria vesca HOM05D006341 ORTHO05D000377 5.9e-259 897.1 490 89.8
FAN20G2467 Fragaria x ananassa HOM05D006341 ORTHO05D000377 7.5e-238 827.0 445 90.1
FAN24G0408 Fragaria x ananassa HOM05D006341 ORTHO05D000377 2.1e-235 818.9 445 89.7
Prupe.8G162700 Prunus persica HOM05D006341 ORTHO05D000377 6.0e-227 790.8 507 78.5
MD05G1118100 Malus domestica HOM05D006341 ORTHO05D000377 1.4e-223 779.6 488 77.0
Dinv04950 Davidia involucrata HOM05D006341 ORTHO05D000377 1.6e-200 703.0 495 68.9
Thecc.02G064100 Theobroma cacao HOM05D006341 ORTHO05D000377 9.0e-199 697.2 485 70.9
Ciclev10028267m.g Citrus clementina HOM05D006341 ORTHO05D000377 8.4e-197 690.6 496 68.1
Duzib132G0346 Durio zibethinus HOM05D006341 ORTHO05D000377 1.6e-195 686.4 485 69.7
QL11p049167 Quercus lobata HOM05D006341 ORTHO05D000377 3.9e-194 681.8 479 69.7
Atru.chr5.3271 Acer truncatum HOM05D006341 ORTHO05D000377 1.1e-193 680.2 493 68.2
CANSAT25G3024 Cannabis sativa HOM05D006341 ORTHO05D000377 1.5e-193 679.9 484 68.8
Haze_02174 Corylus avellana HOM05D006341 ORTHO05D000377 1.9e-193 679.5 480 69.0
Manes.11G082657 Manihot esculenta HOM05D006341 ORTHO05D000377 2.5e-193 679.1 489 67.9
Sabra04G0114400 Salix brachista HOM05D006341 ORTHO05D000377 3.3e-193 678.7 498 66.9
Haze_02181 Corylus avellana HOM05D006341 ORTHO05D000377 4.3e-193 678.3 480 69.0
CSS0004411 Camellia sinensis var. sinensis HOM05D006341 ORTHO05D000377 5.7e-193 677.9 500 66.6
COL.COLO4_17298 Corchorus olitorius HOM05D006341 ORTHO05D000377 2.4e-191 672.5 485 67.6
Gohir.D12G033900 Gossypium hirsutum HOM05D006341 ORTHO05D000377 2.4e-191 672.5 484 68.2
TAR381G0106 Trochodendron aralioides HOM05D006341 ORTHO05D000377 5.3e-191 671.4 493 66.1
Hma1.2p1_0032F.1_g019570 Hydrangea macrophylla HOM05D006341 ORTHO05D000377 1.2e-190 670.2 496 66.7
Gorai.008G034900 Gossypium raimondii HOM05D006341 ORTHO05D000377 1.5e-190 669.8 480 68.3
Potri.004G172100 Populus trichocarpa HOM05D006341 ORTHO05D000377 2.6e-190 669.1 498 66.3
Gohir.A12G038400 Gossypium hirsutum HOM05D006341 ORTHO05D000377 5.0e-189 664.8 484 67.4
COL.COLO4_17179 Corchorus olitorius HOM05D006341 ORTHO05D000377 1.4e-188 663.3 470 68.9
Oeu006673.1 Olea europaea HOM05D006341 ORTHO05D000377 1.0e-186 657.1 493 64.7
TWI53G1223 Tripterygium wilfordii HOM05D006341 ORTHO05D000377 3.9e-186 655.2 499 64.1
vmacro02264 Vaccinium macrocarpon HOM05D006341 ORTHO05D000377 1.1e-185 653.7 534 62.5
Nn7g37263 Nelumbo nucifera HOM05D006341 ORTHO05D000377 2.2e-184 649.4 490 65.5
PGR042G0052 Punica granatum HOM05D006341 ORTHO05D000377 8.2e-184 647.5 478 66.7
Psat7g085760 Pisum sativum HOM05D006341 ORTHO05D000377 1.1e-183 647.1 491 64.8
Actinidia00608 Actinidia chinensis HOM05D006341 ORTHO05D000377 5.3e-183 644.8 467 67.2
TPR.G31245 Trifolium pratense HOM05D006341 ORTHO05D000377 5.3e-183 644.8 490 63.5
Lj4g0012983 Lotus japonicus HOM05D006341 ORTHO05D000377 4.2e-180 635.2 493 64.1
CAN.G134.236 Capsicum annuum HOM05D006341 ORTHO05D000377 1.2e-179 633.6 483 64.6
Atru.chr5.3277 Acer truncatum HOM05D006341 ORTHO05D000377 1.6e-179 633.3 484 64.9
Cc06_g16120 Coffea canephora HOM05D006341 ORTHO05D000377 4.6e-179 631.7 492 63.8
CsaV3_7G000880 Cucumis sativus L. HOM05D006341 ORTHO05D000377 6.7e-178 627.9 492 64.2
Hund06416 Selenicereus undatus HOM05D006341 ORTHO05D000377 4.3e-177 625.2 518 61.0
EL10Ac9g21414 Beta vulgaris HOM05D006341 ORTHO05D000377 7.4e-177 624.4 529 61.2
Peaxi162Scf00434g00625 Petunia axillaris HOM05D006341 ORTHO05D000377 2.8e-176 622.5 500 63.2
Ca_18243_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 8.2e-176 620.9 468 65.0
Sopen01g042030 Solanum pennellii HOM05D006341 ORTHO05D000377 8.2e-176 620.9 496 62.9
Solyc01g098460.4 Solanum lycopersicum HOM05D006341 ORTHO05D000377 1.8e-175 619.8 496 62.9
Migut.B00102 Erythranthe guttata HOM05D006341 ORTHO05D000377 9.1e-175 617.5 482 63.1
AUR62010072 Chenopodium quinoa HOM05D006341 ORTHO05D000377 2.0e-174 616.3 509 61.1
Lj5A183G92 Lonicera japonica HOM05D006341 ORTHO05D000377 7.7e-174 614.4 459 66.2
Aqoxy5G01641 Aquilegia oxysepala HOM05D006341 ORTHO05D000377 1.3e-173 613.6 483 62.3
Eucgr.G01768 Eucalyptus grandis HOM05D006341 ORTHO05D000377 1.3e-173 613.6 501 63.5
Rhsim11G0190600 Rhododendron simsii HOM05D006341 ORTHO05D000377 3.8e-173 612.1 501 63.3
THA.LOC104807791 Tarenaya hassleriana HOM05D006341 ORTHO05D000377 1.9e-172 609.8 494 62.3
AL4G10160 Arabidopsis lyrata HOM05D006341 ORTHO05D000377 2.1e-171 606.3 479 63.0
Lsat_1_v5_gn_8_124961 Lactuca sativa HOM05D006341 ORTHO05D000377 4.7e-171 605.1 483 60.7
Lalb_Chr13g0293551 Lupinus albus HOM05D006341 ORTHO05D000377 4.7e-171 605.1 521 58.2
Thhalv10000146m.g Eutrema salsugineum HOM05D006341 ORTHO05D000377 1.8e-170 603.2 492 62.8
Carub.0003s3491 Capsella rubella HOM05D006341 ORTHO05D000377 2.3e-170 602.8 485 62.5
HanXRQChr17g0553851 Helianthus annuus HOM05D006341 ORTHO05D000377 3.0e-170 602.4 483 60.5
MBI02_g27965_MAGBIO Magnolia biondii HOM05D006341 ORTHO05D000377 5.1e-170 601.7 490 62.2
SGA_v2.0_scaffold58G20406 Striga asiatica HOM05D006341 ORTHO05D000377 8.8e-170 600.9 491 60.7
AT2G21070 Arabidopsis thaliana HOM05D006341 ORTHO05D000377 1.1e-169 600.5 482 62.7
SalBow1G4312 Salvia bowleyana HOM05D006341 ORTHO05D000377 2.0e-169 599.7 489 60.9
Aa31LG7G15600 Aethionema arabicum HOM05D006341 ORTHO05D000377 2.6e-169 599.4 470 63.0
arahy.Tifrunner.gnm1.ann1.UN7M5W Arachis hypogaea HOM05D006341 ORTHO05D000377 2.6e-169 599.4 492 61.0
arahy.Tifrunner.gnm1.ann1.MR7L4V Arachis hypogaea HOM05D006341 ORTHO05D000377 7.4e-169 597.8 486 61.5
Sp4g00210 Schrenkiella parvula HOM05D006341 ORTHO05D000377 9.7e-169 597.4 489 61.8
Nitab4.5_0001423g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 1.3e-168 597.0 478 62.6
Sc08g0003080 Simmondsia chinensis HOM05D006341 ORTHO05D000377 2.8e-168 595.9 516 59.3
MSTRG.16892 Avicennia marina HOM05D006341 ORTHO05D000377 6.3e-168 594.7 490 60.0
Dinv39489 Davidia involucrata HOM05D006341 ORTHO05D000377 8.2e-168 594.3 485 61.9
CARHR111910 Cardamine hirsuta HOM05D006341 ORTHO05D000377 7.0e-167 591.3 483 62.7
MELO3C013369.2 Cucumis melo HOM05D006341 ORTHO05D000377 7.0e-167 591.3 452 65.0
BcaB06g27766 Brassica carinata HOM05D006341 ORTHO05D000377 2.0e-166 589.7 485 61.9
Glyma.08G087700 Glycine max HOM05D006341 ORTHO05D000377 4.5e-166 588.6 494 60.7
Sed0009186 Sechium edule HOM05D006341 ORTHO05D000377 4.5e-166 588.6 454 63.9
BraA04t17219Z Brassica rapa HOM05D006341 ORTHO05D000377 5.9e-166 588.2 490 61.4
C04p50300 Brassica napus HOM05D006341 ORTHO05D000377 8.5e-165 584.3 489 61.6
BolC4t26628H Brassica oleracea HOM05D006341 ORTHO05D000377 8.5e-165 584.3 489 61.6
A04p15870 Brassica napus HOM05D006341 ORTHO05D000377 1.9e-164 583.2 490 61.4
Glyma.05G133200 Glycine max HOM05D006341 ORTHO05D000377 2.7e-163 579.3 490 58.6
ECA233G1460 Erigeron canadensis HOM05D006341 ORTHO05D000377 4.7e-163 578.6 467 62.1
CDE05G1540 Ceratophyllum demersum HOM05D006341 ORTHO05D000377 2.2e-160 569.7 504 56.0
Nitab4.5_0001903g0070 Nicotiana tabacum HOM05D006341 ORTHO05D000377 8.2e-160 567.8 455 63.1
GSVIVG01024058001 Vitis vinifera HOM05D006341 ORTHO05D000377 3.5e-158 562.4 482 59.3
HPP92_014019 Vanilla planifolia HOM05D006341 ORTHO05D000377 6.5e-157 558.1 484 57.6
VMungo0251G3227 Vigna mungo HOM05D006341 ORTHO05D000377 1.9e-156 556.6 455 60.9
ClCG02G004230 Citrullus lanatus HOM05D006341 ORTHO05D000377 1.6e-155 553.5 509 58.9
Os02g0121200 Oryza sativa ssp. japonica HOM05D006341 ORTHO05D000377 1.6e-155 553.5 488 57.6
Ah.01g008830 Amaranthus hybridus HOM05D006341 ORTHO05D000377 6.1e-155 551.6 488 57.8
unitig_60.g25823 Utricularia gibba HOM05D006341 ORTHO05D000377 8.8e-154 547.7 481 57.0
ATR0810G159 Amborella trichopoda HOM05D006341 ORTHO05D000377 9.8e-153 544.3 505 55.0
QL11p048584 Quercus lobata HOM05D006341 ORTHO05D000377 2.5e-148 529.6 432 62.5
SHI05717 Sapria himalayana HOM05D006341 ORTHO05D000377 7.2e-148 528.1 500 54.2
SEGI_13829 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 5.9e-142 508.4 520 51.9
SEGI_22420 Sequoiadendron giganteum HOM05D006341 ORTHO05D000377 2.3e-141 506.5 512 52.1
Phvul.002G189600 Phaseolus vulgaris HOM05D006341 ORTHO05D000377 4.4e-137 492.3 486 54.3
Cpa.g.sc37.173 Carica papaya HOM05D006341 ORTHO05D000377 2.9e-128 463.0 487 52.8
Potri.009G131700 Populus trichocarpa HOM05D006341 ORTHO05D000377 9.2e-127 458.0 317 70.0
Pp3c8_21040 Physcomitrium patens HOM05D006341 ORTHO05D000377 1.7e-125 453.8 553 44.3
AagrBONN_evm.TU.Sc2ySwM_228.2682 Anthoceros agrestis HOM05D006341 ORTHO05D000377 7.3e-124 448.4 490 49.0
Mapoly0085s0033 Marchantia polymorpha HOM05D006341 ORTHO05D000377 1.6e-123 447.2 564 44.1
Zm00001eb208320 Zea mays HOM05D006341 ORTHO05D000377 3.1e-122 443.0 405 55.3
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.5e-116 423.3 280 75.0
Ca_18241_v3 Cicer arietinum L. HOM05D006341 ORTHO05D000377 1.8e-114 417.2 403 55.8
CiPaw.06G124100 Carya illinoinensis HOM05D006341 ORTHO05D000377 5.8e-113 412.1 350 62.0
Atru.chr5.3221 Acer truncatum HOM05D006341 ORTHO05D000377 4.3e-108 396.0 282 68.4
SMO169G0079 Selaginella moellendorffii HOM05D006341 ORTHO05D000377 6.0e-102 375.6 488 43.9
Nitab4.5_0008354g0020 Nicotiana tabacum HOM05D006341 ORTHO05D000377 3.0e-101 373.2 355 55.5
Carub.0004s0010 Capsella rubella HOM05D006341 ORTHO05D000377 5.3e-98 362.5 485 44.5
Sabra09G0102100 Salix brachista HOM05D006341 ORTHO05D000377 5.1e-69 266.2 306 49.3
MCO01G168 Micromonas commoda HOM05D006341 ORTHO05D000377 2.4e-66 257.3 329 42.6
PGSC0003DMG401028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 1.2e-62 245.0 140 78.6
Cre01.g044150 Chlamydomonas reinhardtii HOM05D006341 ORTHO05D000377 5.1e-61 239.6 384 35.9
CBR_g23939 Chara braunii HOM05D006341 ORTHO05D000377 1.7e-48 198.0 827 24.2
FAN07G2354 Fragaria x ananassa HOM05D006341 ORTHO05D000377 2.7e-46 190.7 142 72.5
FAN07G1625 Fragaria x ananassa HOM05D006341 ORTHO05D000377 7.5e-44 182.6 95 91.6
PRCOL_00006207 Prasinoderma coloniale HOM05D006341 ORTHO05D000377 6.3e-43 179.5 336 33.6
PGSC0003DMG402028564 Solanum tuberosum HOM05D006341 ORTHO05D000377 5.2e-37 159.8 119 64.7
Actinidia20497 Actinidia chinensis HOM05D006341 ORTHO05D000377 3.1e-26 124.0 75 76.0
Oeu063293.1 Olea europaea HOM05D006341 ORTHO05D000377 1.5e-23 115.2 136 50.0
Atru.chr5.3222 Acer truncatum HOM05D006341 ORTHO05D000377 9.8e-12 75.9 60 55.0
MD10G1121100 Malus domestica HOM05D006341 ORTHO05D000377 2.5e-07 61.2 46 65.2


User provided reference genes

Program Settings