Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 7.5e-91 337.0 156 100.0
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.7e-77 291.2 156 88.5
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.9e-74 281.2 142 90.8
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.4e-73 277.7 144 90.3
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 8.7e-63 243.8 132 87.9
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 5.4e-57 224.6 130 76.2
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 7.1e-57 224.2 130 73.8
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.6e-56 223.0 130 74.6
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.7e-56 222.2 130 73.8
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 3.5e-56 221.9 130 73.1
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 6.0e-56 221.1 149 67.8
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.8e-55 219.5 130 72.3
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.3e-55 219.2 143 69.2
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.3e-55 219.2 130 72.3
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.3e-55 219.2 130 73.1
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 3.9e-55 218.4 129 71.3
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 3.9e-55 218.4 130 73.8
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 5.1e-55 218.0 130 73.1
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.1e-54 216.9 130 69.2
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.1e-54 216.9 130 72.3
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 2.5e-54 215.7 127 72.4
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 3.3e-54 215.3 142 67.6
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 4.3e-54 214.9 131 71.8
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 1.3e-53 213.4 130 70.0
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-53 213.0 131 71.0
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 1.6e-53 213.0 132 72.0
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 1.6e-53 213.0 132 72.0
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 1.6e-53 213.0 131 71.0
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 2.1e-53 212.6 131 70.2
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 2.1e-53 212.6 131 71.0
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 2.1e-53 212.6 130 73.1
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 3.7e-53 211.8 131 71.8
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.8e-53 211.5 131 71.8
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 4.8e-53 211.5 131 71.0
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 4.8e-53 211.5 131 71.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 4.8e-53 211.5 154 66.2
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 4.8e-53 211.5 154 66.2
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 4.8e-53 211.5 154 65.6
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 6.2e-53 211.1 131 71.0
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 6.2e-53 211.1 142 66.9
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 8.1e-53 210.7 130 69.2
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.1e-52 210.3 132 70.5
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.1e-52 210.3 130 70.8
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.8e-52 209.5 131 69.5
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.8e-52 209.5 130 70.8
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 2.4e-52 209.1 131 70.2
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 2.4e-52 209.1 130 70.0
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.4e-52 209.1 144 66.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 3.1e-52 208.8 122 73.8
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 3.1e-52 208.8 140 66.4
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.1e-52 208.8 145 66.2
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 4.0e-52 208.4 151 63.6
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.0e-52 208.4 143 63.6
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 5.3e-52 208.0 131 69.5
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.3e-52 208.0 130 70.0
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 6.9e-52 207.6 142 64.8
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 9.0e-52 207.2 122 72.1
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 9.0e-52 207.2 130 70.8
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 9.0e-52 207.2 130 68.5
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 1.5e-51 206.5 141 65.2
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.5e-51 206.5 147 63.3
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 3.4e-51 205.3 123 69.9
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 7.6e-51 204.1 153 65.4
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 7.6e-51 204.1 129 69.8
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 7.6e-51 204.1 147 61.9
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 1.3e-50 203.4 130 67.7
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 2.9e-50 202.2 144 61.1
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.9e-50 202.2 130 67.7
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 4.9e-50 201.4 153 64.1
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 6.4e-50 201.1 122 69.7
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 1.4e-49 199.9 143 62.2
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.4e-49 199.9 144 60.4
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.4e-49 199.9 132 66.7
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.4e-49 199.9 132 66.7
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.9e-49 199.5 123 74.0
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.9e-49 199.5 154 61.0
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.4e-49 199.1 138 65.2
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.2e-49 198.7 132 66.7
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 3.2e-49 198.7 154 61.0
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 3.2e-49 198.7 127 70.1
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 5.5e-49 198.0 146 61.0
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 5.5e-49 198.0 132 65.2
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 7.1e-49 197.6 138 64.5
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 7.1e-49 197.6 141 63.8
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.2e-48 196.8 130 67.7
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.6e-48 196.4 134 65.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 2.1e-48 196.1 154 57.8
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 3.5e-48 195.3 138 65.2
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 4.6e-48 194.9 145 63.4
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 4.6e-48 194.9 119 69.7
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 7.9e-48 194.1 128 68.8
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.9e-48 194.1 148 60.1
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.3e-47 192.6 129 67.4
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.9e-47 191.8 130 65.4
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 5.1e-47 191.4 150 59.3
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.1e-46 190.3 126 68.3
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 4.3e-46 188.3 154 57.1
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 4.3e-46 188.3 155 55.5
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.6e-46 188.0 130 65.4
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 9.6e-46 187.2 130 65.4
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.8e-45 185.7 130 64.6
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 6.2e-45 184.5 113 70.8
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 3.1e-44 182.2 127 66.1
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 5.3e-44 181.4 142 61.3
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 9.0e-44 180.6 108 71.3
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 9.0e-44 180.6 108 71.3
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.2e-43 180.3 129 64.3
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.2e-42 176.0 147 55.1
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 7.1e-41 171.0 156 57.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 4.6e-40 168.3 154 53.2
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.0e-39 167.2 153 52.9
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 8.2e-37 157.5 118 60.2
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 1.8e-36 156.4 174 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 4.5e-35 151.8 117 54.7
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 1.3e-34 150.2 124 54.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 8.5e-34 147.5 126 53.2
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.5e-30 136.7 144 47.2
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 2.1e-24 116.3 72 73.6
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 3.6e-24 115.5 87 58.6
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 7.7e-19 97.8 53 75.5
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.0e-18 97.4 94 52.1
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.0e-18 97.4 105 52.4
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 2.2e-18 96.3 53 73.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.9e-17 93.2 54 68.5
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.0e-15 87.4 54 66.7
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 5.2e-15 85.1 53 66.0
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.6e-14 82.8 53 66.0
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.3e-14 82.4 102 44.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 9.7e-14 80.9 71 50.7
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 3.1e-12 75.9 100 44.0
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 3.5e-11 72.4 43 72.1
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 4.5e-11 72.0 44 65.9
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.3e-10 70.5 128 39.1
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.1e-09 67.4 73 43.8
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 1.9e-09 66.6 79 41.8
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.2e-09 65.9 76 40.8
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.4e-09 64.3 73 42.5
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.4e-09 64.3 73 42.5
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 2.7e-08 62.8 76 39.5
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 4.0e-07 58.9 72 44.4
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 3.3e-06 55.8 45 57.8


User provided reference genes

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