Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0409571 Rosa chinensis HOM05D001446 ORTHO05D001360 7.5e-32 139.8 66 100.0
FAN01G1708 Fragaria x ananassa HOM05D001446 ORTHO05D001360 8.3e-23 109.8 64 79.7
FAN10G0715 Fragaria x ananassa HOM05D001446 ORTHO05D001360 8.3e-23 109.8 64 79.7
FAN10G4120 Fragaria x ananassa HOM05D001446 ORTHO05D001360 8.3e-23 109.8 64 79.7
FAN03G3478 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.1e-22 109.4 64 78.1
FvH4_7g22000 Fragaria vesca HOM05D001446 ORTHO05D001360 1.8e-22 108.6 64 78.1
FAN06G0428 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.8e-22 108.6 64 78.1
FAN06G0816 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.8e-22 108.6 64 78.1
RcHm_v2.0_Chr1g0366351 Rosa chinensis HOM05D001446 ORTHO05D001360 1.8e-22 108.6 64 81.2
Prupe.2G231900 Prunus persica HOM05D001446 ORTHO05D001360 2.2e-15 85.1 64 60.9
MD01G1124500 Malus domestica HOM05D001446 ORTHO05D001360 6.3e-15 83.6 64 59.4
QL08p059081 Quercus lobata HOM05D001446 ORTHO05D001360 1.1e-14 82.8 64 59.4
MD07G1194400 Malus domestica HOM05D001446 ORTHO05D001360 1.8e-14 82.0 62 59.7
CiPaw.02G182700 Carya illinoinensis HOM05D001446 ORTHO05D001360 9.2e-14 79.7 64 59.4
Lalb_Chr04g0257811 Lupinus albus HOM05D001446 ORTHO05D001360 9.2e-14 79.7 64 54.7
FAN01G0167 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.2e-13 79.3 47 80.9
Cfa001503 Carpinus fangiana HOM05D001446 ORTHO05D001360 2.7e-13 78.2 64 56.2
Lj1g0002900 Lotus japonicus HOM05D001446 ORTHO05D001360 3.5e-13 77.8 64 56.2
Dinv31437 Davidia involucrata HOM05D001446 ORTHO05D001360 4.5e-13 77.4 64 56.2
Cc02_g08120 Coffea canephora HOM05D001446 ORTHO05D001360 1.0e-12 76.3 64 60.9
Sopen05g033100 Solanum pennellii HOM05D001446 ORTHO05D001360 1.3e-12 75.9 64 59.4
Solyc05g054620.4 Solanum lycopersicum HOM05D001446 ORTHO05D001360 1.7e-12 75.5 64 59.4
Hma1.2p1_0533F.1_g173620 Hydrangea macrophylla HOM05D001446 ORTHO05D001360 2.3e-12 75.1 62 61.3
Peaxi162Scf00015g01614 Petunia axillaris HOM05D001446 ORTHO05D001360 3.9e-12 74.3 64 57.8
PGSC0003DMG400023521 Solanum tuberosum HOM05D001446 ORTHO05D001360 3.9e-12 74.3 64 57.8
Ca_07246_v3 Cicer arietinum L. HOM05D001446 ORTHO05D001360 5.0e-12 73.9 64 53.1
CAN.G1013.5 Capsicum annuum HOM05D001446 ORTHO05D001360 8.6e-12 73.2 64 57.8
VMungo1383G2464 Vigna mungo HOM05D001446 ORTHO05D001360 8.6e-12 73.2 64 53.1
TWI38G0438 Tripterygium wilfordii HOM05D001446 ORTHO05D001360 1.5e-11 72.4 64 56.2
Phvul.008G013100 Phaseolus vulgaris HOM05D001446 ORTHO05D001360 2.5e-11 71.6 64 53.1
Glyma.18G289000 Glycine max HOM05D001446 ORTHO05D001360 3.3e-11 71.2 64 51.6
Carub.0004s2164 Capsella rubella HOM05D001446 ORTHO05D001360 4.3e-11 70.9 64 53.1
Psat3g182560 Pisum sativum HOM05D001446 ORTHO05D001360 5.6e-11 70.5 64 50.0
Ciclev10031651m.g Citrus clementina HOM05D001446 ORTHO05D001360 7.3e-11 70.1 64 56.2
Thhalv10016727m.g Eutrema salsugineum HOM05D001446 ORTHO05D001360 9.5e-11 69.7 64 51.6
Sp4g21860 Schrenkiella parvula HOM05D001446 ORTHO05D001360 2.1e-10 68.6 64 51.6
Nitab4.5_0006342g0020 Nicotiana tabacum HOM05D001446 ORTHO05D001360 2.8e-10 68.2 64 54.7
PGR102G0440 Punica granatum HOM05D001446 ORTHO05D001360 3.6e-10 67.8 64 51.6
AT2G39570 Arabidopsis thaliana HOM05D001446 ORTHO05D001360 4.7e-10 67.4 64 51.6
Lj8A86T51 Lonicera japonica HOM05D001446 ORTHO05D001360 4.7e-10 67.4 64 56.2
TAR633G1140 Trochodendron aralioides HOM05D001446 ORTHO05D001360 4.7e-10 67.4 64 53.1
Nitab4.5_0001831g0120 Nicotiana tabacum HOM05D001446 ORTHO05D001360 8.0e-10 66.6 64 53.1
TPR.G15515 Trifolium pratense HOM05D001446 ORTHO05D001360 8.0e-10 66.6 64 50.0
AL4G36980 Arabidopsis lyrata HOM05D001446 ORTHO05D001360 1.0e-09 66.2 64 50.0
arahy.Tifrunner.gnm1.ann1.5EW6J1 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.0e-09 66.2 65 53.8
arahy.Tifrunner.gnm1.ann1.QI8P42 Arachis hypogaea HOM05D001446 ORTHO05D001360 1.0e-09 66.2 65 53.8
BcaC02g07393 Brassica carinata HOM05D001446 ORTHO05D001360 1.8e-09 65.5 65 50.8
A04p30390 Brassica napus HOM05D001446 ORTHO05D001360 1.8e-09 65.5 65 50.8
C04p67430 Brassica napus HOM05D001446 ORTHO05D001360 1.8e-09 65.5 65 50.8
BolC4t28241H Brassica oleracea HOM05D001446 ORTHO05D001360 1.8e-09 65.5 65 50.8
BraA04t18469Z Brassica rapa HOM05D001446 ORTHO05D001360 1.8e-09 65.5 65 50.8
MBI14_g40212_MAGBIO Magnolia biondii HOM05D001446 ORTHO05D001360 1.8e-09 65.5 64 51.6
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.3e-09 65.1 64 53.1
vmacro07159 Vaccinium macrocarpon HOM05D001446 ORTHO05D001360 2.3e-09 65.1 64 48.4
CSS0000046 Camellia sinensis var. sinensis HOM05D001446 ORTHO05D001360 3.1e-09 64.7 64 48.4
Lsat_1_v5_gn_9_65181 Lactuca sativa HOM05D001446 ORTHO05D001360 3.1e-09 64.7 64 51.6
BcaB06g29098 Brassica carinata HOM05D001446 ORTHO05D001360 4.0e-09 64.3 65 50.8
TAR369G0682 Trochodendron aralioides HOM05D001446 ORTHO05D001360 4.0e-09 64.3 64 53.1
Aqoxy2G02055 Aquilegia oxysepala HOM05D001446 ORTHO05D001360 5.2e-09 63.9 64 51.6
Cpa.g.sc1.381 Carica papaya HOM05D001446 ORTHO05D001360 5.2e-09 63.9 64 53.1
TAR369G0261 Trochodendron aralioides HOM05D001446 ORTHO05D001360 5.2e-09 63.9 64 53.1
Aqoxy4G02978 Aquilegia oxysepala HOM05D001446 ORTHO05D001360 6.8e-09 63.5 67 47.8
Medtr7g024320 Medicago truncatula HOM05D001446 ORTHO05D001360 6.8e-09 63.5 64 46.9
Nn2g10417 Nelumbo nucifera HOM05D001446 ORTHO05D001360 8.9e-09 63.2 64 54.7
Nn2g12810 Nelumbo nucifera HOM05D001446 ORTHO05D001360 8.9e-09 63.2 64 46.9
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 1.2e-08 62.8 64 48.4
Carub.0005s1177 Capsella rubella HOM05D001446 ORTHO05D001360 1.2e-08 62.8 64 51.6
Thecc.09G325600 Theobroma cacao HOM05D001446 ORTHO05D001360 1.2e-08 62.8 64 51.6
PSO339G1537 Papaver somniferum HOM05D001446 ORTHO05D001360 1.5e-08 62.4 64 50.0
EL10Ac7g15979 Beta vulgaris HOM05D001446 ORTHO05D001360 2.0e-08 62.0 64 50.0
ECA238G4227 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.0e-08 62.0 64 50.0
Rhsim09G0164700 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.0e-08 62.0 64 53.1
Aa31LG5G20050 Aethionema arabicum HOM05D001446 ORTHO05D001360 2.6e-08 61.6 64 50.0
PSO339G3247 Papaver somniferum HOM05D001446 ORTHO05D001360 2.6e-08 61.6 66 50.0
GSVIVG01025006001 Vitis vinifera HOM05D001446 ORTHO05D001360 2.6e-08 61.6 68 47.1
Atru.chr3.3839 Acer truncatum HOM05D001446 ORTHO05D001360 3.4e-08 61.2 62 53.2
Cc01_g12510 Coffea canephora HOM05D001446 ORTHO05D001360 3.4e-08 61.2 64 51.6
Thhalv10002542m.g Eutrema salsugineum HOM05D001446 ORTHO05D001360 3.4e-08 61.2 64 51.6
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 3.4e-08 61.2 64 51.6
AL5G24610 Arabidopsis lyrata HOM05D001446 ORTHO05D001360 4.4e-08 60.8 64 48.4
CiPaw.13G097600 Carya illinoinensis HOM05D001446 ORTHO05D001360 4.4e-08 60.8 64 43.8
CDE04G1496 Ceratophyllum demersum HOM05D001446 ORTHO05D001360 4.4e-08 60.8 64 46.9
THA.LOC104810818 Tarenaya hassleriana HOM05D001446 ORTHO05D001360 4.4e-08 60.8 64 46.9
Atru.chr12.499 Acer truncatum HOM05D001446 ORTHO05D001360 5.8e-08 60.5 67 49.3
Lsat_1_v5_gn_2_116501 Lactuca sativa HOM05D001446 ORTHO05D001360 5.8e-08 60.5 69 52.2
CARHR134440 Cardamine hirsuta HOM05D001446 ORTHO05D001360 7.5e-08 60.1 64 48.4
FvH4_3g35480 Fragaria vesca HOM05D001446 ORTHO05D001360 7.5e-08 60.1 64 51.6
FAN25G1939 Fragaria x ananassa HOM05D001446 ORTHO05D001360 7.5e-08 60.1 64 51.6
RcHm_v2.0_Chr5g0063651 Rosa chinensis HOM05D001446 ORTHO05D001360 7.5e-08 60.1 64 48.4
Sp5g15630 Schrenkiella parvula HOM05D001446 ORTHO05D001360 7.5e-08 60.1 64 48.4
Hund18926 Selenicereus undatus HOM05D001446 ORTHO05D001360 7.5e-08 60.1 64 51.6
THA.LOC104810025 Tarenaya hassleriana HOM05D001446 ORTHO05D001360 7.5e-08 60.1 64 51.6
Haze_24054 Corylus avellana HOM05D001446 ORTHO05D001360 9.8e-08 59.7 62 46.8
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 9.8e-08 59.7 64 51.6
Potri.008G052900 Populus trichocarpa HOM05D001446 ORTHO05D001360 9.8e-08 59.7 67 49.3
Nitab4.5_0000070g0200 Nicotiana tabacum HOM05D001446 ORTHO05D001360 1.7e-07 58.9 64 50.0
PSO648G0008 Papaver somniferum HOM05D001446 ORTHO05D001360 1.7e-07 58.9 64 48.4
Cfa011468 Carpinus fangiana HOM05D001446 ORTHO05D001360 2.2e-07 58.5 62 46.8
CDE07G0507 Ceratophyllum demersum HOM05D001446 ORTHO05D001360 2.2e-07 58.5 64 45.3
FAN11G2055 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.2e-07 58.5 64 50.0
Sabra08G0038000 Salix brachista HOM05D001446 ORTHO05D001360 2.2e-07 58.5 65 50.8
Potri.010G207700 Populus trichocarpa HOM05D001446 ORTHO05D001360 2.9e-07 58.2 69 50.7
HanXRQChr08g0220311 Helianthus annuus HOM05D001446 ORTHO05D001360 3.7e-07 57.8 64 45.3
BcaC09g49724 Brassica carinata HOM05D001446 ORTHO05D001360 4.9e-07 57.4 65 49.2
C01p33580 Brassica napus HOM05D001446 ORTHO05D001360 4.9e-07 57.4 65 49.2
BolC1t03304H Brassica oleracea HOM05D001446 ORTHO05D001360 4.9e-07 57.4 65 49.2
HanXRQChr07g0201201 Helianthus annuus HOM05D001446 ORTHO05D001360 4.9e-07 57.4 64 46.9
Nitab4.5_0000610g0040 Nicotiana tabacum HOM05D001446 ORTHO05D001360 4.9e-07 57.4 64 48.4
GSVIVG01016580001 Vitis vinifera HOM05D001446 ORTHO05D001360 4.9e-07 57.4 64 50.0
Ah.15g096910 Amaranthus hybridus HOM05D001446 ORTHO05D001360 6.4e-07 57.0 64 48.4
CiPaw.14G070900 Carya illinoinensis HOM05D001446 ORTHO05D001360 6.4e-07 57.0 64 45.3
Lsat_1_v5_gn_8_16721 Lactuca sativa HOM05D001446 ORTHO05D001360 6.4e-07 57.0 64 46.9
Potri.001G237100 Populus trichocarpa HOM05D001446 ORTHO05D001360 6.4e-07 57.0 64 51.6
vmacro03097 Vaccinium macrocarpon HOM05D001446 ORTHO05D001360 6.4e-07 57.0 64 50.0
Sc06g0008240 Simmondsia chinensis HOM05D001446 ORTHO05D001360 8.3e-07 56.6 64 43.8
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.1e-06 56.2 49 55.1
Thecc.10G046500 Theobroma cacao HOM05D001446 ORTHO05D001360 1.1e-06 56.2 72 44.4
Zm00001eb355670 Zea mays HOM05D001446 ORTHO05D001360 1.1e-06 56.2 62 46.8
Dinv32871 Davidia involucrata HOM05D001446 ORTHO05D001360 1.4e-06 55.8 64 45.3
QL01p032945 Quercus lobata HOM05D001446 ORTHO05D001360 1.4e-06 55.8 61 47.5
CAN.G111.9 Capsicum annuum HOM05D001446 ORTHO05D001360 1.9e-06 55.5 64 51.6
Gohir.A13G019800 Gossypium hirsutum HOM05D001446 ORTHO05D001360 2.4e-06 55.1 69 43.5
HanXRQChr15g0496921 Helianthus annuus HOM05D001446 ORTHO05D001360 2.4e-06 55.1 66 51.5
Nitab4.5_0000610g0140 Nicotiana tabacum HOM05D001446 ORTHO05D001360 3.2e-06 54.7 64 46.9
Nitab4.5_0003782g0050 Nicotiana tabacum HOM05D001446 ORTHO05D001360 3.2e-06 54.7 60 48.3
Gohir.D13G020400 Gossypium hirsutum HOM05D001446 ORTHO05D001360 4.1e-06 54.3 70 42.9
Gorai.013G022700 Gossypium raimondii HOM05D001446 ORTHO05D001360 4.1e-06 54.3 70 42.9
Duzib114G0492 Durio zibethinus HOM05D001446 ORTHO05D001360 7.0e-06 53.5 70 44.3
Duzib114G0091 Durio zibethinus HOM05D001446 ORTHO05D001360 9.2e-06 53.1 68 47.1


User provided reference genes

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