Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 5.2e-87 324.3 160 100.0
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 2.6e-78 295.4 161 91.3
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.4e-78 294.7 161 91.3
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 7.5e-78 293.9 161 90.1
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.0e-71 273.5 208 70.7
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.4e-71 273.1 208 71.2
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 1.4e-71 273.1 158 83.5
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 1.8e-71 272.7 160 84.4
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 2.3e-71 272.3 213 69.0
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 2.0e-70 269.2 158 83.5
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 2.7e-67 258.8 155 76.8
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 1.0e-66 256.9 159 78.6
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 3.0e-66 255.4 154 79.2
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 5.0e-66 254.6 149 81.9
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 6.6e-66 254.2 139 85.6
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 8.6e-66 253.8 150 81.3
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.1e-65 253.4 150 79.3
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.1e-65 253.4 152 77.6
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.5e-65 253.1 148 83.1
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 3.3e-65 251.9 154 78.6
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 5.6e-65 251.1 139 84.2
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 7.3e-65 250.8 145 80.7
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 9.5e-65 250.4 154 75.3
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.2e-64 250.0 138 84.8
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.2e-64 250.0 150 77.3
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.6e-64 249.6 145 80.0
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 1.6e-64 249.6 152 76.3
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 1.6e-64 249.6 157 74.5
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 2.1e-64 249.2 154 76.6
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 2.8e-64 248.8 149 76.5
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 2.8e-64 248.8 149 75.8
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 3.6e-64 248.4 158 74.1
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 3.6e-64 248.4 158 74.1
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 3.6e-64 248.4 158 74.1
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 3.6e-64 248.4 158 74.1
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 6.2e-64 247.7 159 74.2
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 6.2e-64 247.7 165 72.7
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.1e-63 246.9 150 76.0
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 1.1e-63 246.9 146 78.1
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 1.1e-63 246.9 147 76.2
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.4e-63 246.5 152 78.3
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 1.4e-63 246.5 138 80.4
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 1.8e-63 246.1 134 82.8
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 1.8e-63 246.1 138 82.6
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 2.3e-63 245.7 152 75.0
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.3e-63 245.7 155 73.5
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.3e-63 245.7 155 74.8
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 2.3e-63 245.7 159 73.0
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 2.3e-63 245.7 140 82.9
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 3.1e-63 245.4 149 76.5
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 3.1e-63 245.4 155 74.8
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 3.1e-63 245.4 155 74.8
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 3.1e-63 245.4 150 75.3
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 3.1e-63 245.4 147 76.9
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 4.0e-63 245.0 153 72.5
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 4.0e-63 245.0 153 72.5
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 4.0e-63 245.0 155 73.5
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 4.0e-63 245.0 134 82.8
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 4.0e-63 245.0 155 72.9
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 4.0e-63 245.0 154 76.0
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 5.2e-63 244.6 148 79.1
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 5.2e-63 244.6 148 79.1
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 5.2e-63 244.6 148 79.1
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.8e-63 244.2 165 73.3
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 6.8e-63 244.2 153 75.8
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 6.8e-63 244.2 158 75.3
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 6.8e-63 244.2 157 73.9
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 8.9e-63 243.8 154 73.4
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 8.9e-63 243.8 135 80.7
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 1.2e-62 243.4 148 75.0
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 1.5e-62 243.0 134 82.8
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 2.0e-62 242.7 147 75.5
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.0e-62 242.7 155 74.2
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 2.0e-62 242.7 155 74.2
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.6e-62 242.3 158 72.2
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 3.4e-62 241.9 158 72.2
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 3.4e-62 241.9 158 72.2
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 5.8e-62 241.1 148 75.0
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 7.5e-62 240.7 149 75.2
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 9.8e-62 240.4 155 72.3
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 9.8e-62 240.4 155 72.3
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 1.3e-61 240.0 151 71.5
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 1.3e-61 240.0 155 71.6
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 1.7e-61 239.6 146 74.7
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.7e-61 239.6 155 74.2
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 2.2e-61 239.2 152 73.7
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.2e-61 239.2 156 71.8
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 2.9e-61 238.8 148 73.6
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 2.9e-61 238.8 147 75.5
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 3.7e-61 238.4 148 73.6
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 4.9e-61 238.0 151 71.5
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 6.4e-61 237.7 134 81.3
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 1.4e-60 236.5 149 73.2
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 1.9e-60 236.1 159 70.4
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 1.9e-60 236.1 159 70.4
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 3.2e-60 235.3 135 78.5
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 3.2e-60 235.3 150 74.7
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 3.2e-60 235.3 157 70.1
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 2.1e-59 232.6 158 67.1
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 4.6e-59 231.5 137 76.6
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 4.6e-59 231.5 137 77.4
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 2.3e-58 229.2 130 78.5
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 6.6e-58 227.6 152 73.0
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 1.9e-57 226.1 135 74.1
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 2.5e-57 225.7 156 64.7
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 1.2e-56 223.4 133 72.9
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 1.2e-56 223.4 150 70.0
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 8.1e-56 220.7 148 68.9
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 3.4e-54 215.3 171 62.6
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 6.4e-53 211.1 146 66.4
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 6.0e-51 204.5 121 79.3
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 1.0e-50 203.8 153 60.8
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 2.9e-45 185.7 150 62.7
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 2.9e-45 185.7 97 86.6
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.9e-44 183.0 99 83.8
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 1.6e-43 179.9 158 58.9
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 2.7e-43 179.1 143 58.0
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 6.0e-43 177.9 135 56.3
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 8.7e-34 147.5 86 82.6
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.2e-24 114.8 72 72.2
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-23 114.0 83 62.7
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 3.9e-18 95.5 156 35.9
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 1.5e-17 93.6 86 54.7
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 3.2e-12 75.9 107 35.5
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 9.0e-07 57.8 45 57.8


User provided reference genes

Program Settings