Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397461 Rosa chinensis HOM05D003820 ORTHO05D004540 5.7e-42 173.7 81 100.0
TAR626G0254 Trochodendron aralioides HOM05D003820 ORTHO05D004540 2.6e-18 95.1 69 71.0
Rhsim02G0099100 Rhododendron simsii HOM05D003820 ORTHO05D004540 3.4e-18 94.7 71 67.6
CANSAT56G3158 Cannabis sativa HOM05D003820 ORTHO05D004540 4.4e-18 94.4 69 69.6
CSS0046639 Camellia sinensis var. sinensis HOM05D003820 ORTHO05D004540 5.8e-18 94.0 69 69.6
Dinv07403 Davidia involucrata HOM05D003820 ORTHO05D004540 5.8e-18 94.0 69 69.6
Manes.01G126900 Manihot esculenta HOM05D003820 ORTHO05D004540 5.8e-18 94.0 69 68.1
vmacro15759 Vaccinium macrocarpon HOM05D003820 ORTHO05D004540 5.8e-18 94.0 71 66.2
Actinidia11885 Actinidia chinensis HOM05D003820 ORTHO05D004540 7.5e-18 93.6 71 66.2
ClCG01G010230 Citrullus lanatus HOM05D003820 ORTHO05D004540 7.5e-18 93.6 69 69.6
PSO541G5704 Papaver somniferum HOM05D003820 ORTHO05D004540 7.5e-18 93.6 71 66.2
PSO675G6471 Papaver somniferum HOM05D003820 ORTHO05D004540 7.5e-18 93.6 71 66.2
Sed0023864 Sechium edule HOM05D003820 ORTHO05D004540 7.5e-18 93.6 69 68.1
Actinidia39270 Actinidia chinensis HOM05D003820 ORTHO05D004540 9.8e-18 93.2 71 66.2
CiPaw.10G077900 Carya illinoinensis HOM05D003820 ORTHO05D004540 9.8e-18 93.2 69 68.1
CDE04G2792 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 9.8e-18 93.2 69 69.6
CDE07G1892 Ceratophyllum demersum HOM05D003820 ORTHO05D004540 9.8e-18 93.2 69 69.6
CsaV3_1G017170 Cucumis sativus L. HOM05D003820 ORTHO05D004540 9.8e-18 93.2 69 68.1
Sabra16G0001800 Salix brachista HOM05D003820 ORTHO05D004540 9.8e-18 93.2 69 66.7
Sabra16G0016300 Salix brachista HOM05D003820 ORTHO05D004540 9.8e-18 93.2 69 66.7
MELO3C025562.2 Cucumis melo HOM05D003820 ORTHO05D004540 1.3e-17 92.8 69 68.1
Lj2A261T37 Lonicera japonica HOM05D003820 ORTHO05D004540 1.3e-17 92.8 69 69.6
Sc17g0007740 Simmondsia chinensis HOM05D003820 ORTHO05D004540 1.3e-17 92.8 69 68.1
PGR042G2289 Punica granatum HOM05D003820 ORTHO05D004540 1.7e-17 92.4 65 72.3
PGR102G0671 Punica granatum HOM05D003820 ORTHO05D004540 1.7e-17 92.4 65 72.3
QL05p069714 Quercus lobata HOM05D003820 ORTHO05D004540 1.7e-17 92.4 69 69.6
Migut.M01395 Erythranthe guttata HOM05D003820 ORTHO05D004540 2.2e-17 92.0 69 69.6
Prupe.4G010400 Prunus persica HOM05D003820 ORTHO05D004540 2.2e-17 92.0 69 69.6
RcHm_v2.0_Chr5g0001511 Rosa chinensis HOM05D003820 ORTHO05D004540 2.2e-17 92.0 69 68.1
Zm00001eb225610 Zea mays HOM05D003820 ORTHO05D004540 2.9e-17 91.7 69 68.1
CAN.G1299.7 Capsicum annuum HOM05D003820 ORTHO05D004540 3.7e-17 91.3 69 66.7
Manes.02G083800 Manihot esculenta HOM05D003820 ORTHO05D004540 3.7e-17 91.3 69 63.8
Nitab4.5_0000443g0170 Nicotiana tabacum HOM05D003820 ORTHO05D004540 3.7e-17 91.3 69 66.7
Nitab4.5_0008965g0020 Nicotiana tabacum HOM05D003820 ORTHO05D004540 3.7e-17 91.3 69 66.7
Potri.006G010100 Populus trichocarpa HOM05D003820 ORTHO05D004540 3.7e-17 91.3 69 65.2
Sabra06G0008300 Salix brachista HOM05D003820 ORTHO05D004540 3.7e-17 91.3 69 65.2
Aqoxy3G02484 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 4.9e-17 90.9 69 66.7
Ciclev10004667m.g Citrus clementina HOM05D003820 ORTHO05D004540 4.9e-17 90.9 69 65.2
Haze_06925 Corylus avellana HOM05D003820 ORTHO05D004540 4.9e-17 90.9 69 68.1
Mapoly0061s0070 Marchantia polymorpha HOM05D003820 ORTHO05D004540 4.9e-17 90.9 69 65.2
Lalb_Chr03g0038011 Lupinus albus HOM05D003820 ORTHO05D004540 6.4e-17 90.5 65 69.2
Potri.016G014000 Populus trichocarpa HOM05D003820 ORTHO05D004540 6.4e-17 90.5 69 65.2
Phvul.007G152400 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 8.3e-17 90.1 69 65.2
Phvul.008G270100 Phaseolus vulgaris HOM05D003820 ORTHO05D004540 8.3e-17 90.1 69 65.2
VMungo0647G1639 Vigna mungo HOM05D003820 ORTHO05D004540 8.3e-17 90.1 69 65.2
Atru.chr1.2450 Acer truncatum HOM05D003820 ORTHO05D004540 1.1e-16 89.7 64 68.8
Glyma.10G073300 Glycine max HOM05D003820 ORTHO05D004540 1.1e-16 89.7 69 65.2
Glyma.13G154200 Glycine max HOM05D003820 ORTHO05D004540 1.1e-16 89.7 69 65.2
Hund23407 Selenicereus undatus HOM05D003820 ORTHO05D004540 1.1e-16 89.7 69 65.2
Sopen02g017620 Solanum pennellii HOM05D003820 ORTHO05D004540 1.1e-16 89.7 69 65.2
PGSC0003DMG400009435 Solanum tuberosum HOM05D003820 ORTHO05D004540 1.1e-16 89.7 69 65.2
TPR.G29505 Trifolium pratense HOM05D003820 ORTHO05D004540 1.1e-16 89.7 69 65.2
AagrBONN_evm.TU.Sc2ySwM_344.5496 Anthoceros agrestis HOM05D003820 ORTHO05D004540 1.4e-16 89.4 61 70.5
arahy.Tifrunner.gnm1.ann1.7FS7F8 Arachis hypogaea HOM05D003820 ORTHO05D004540 1.4e-16 89.4 69 63.8
AUR62012795 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.4e-16 89.4 69 63.8
AUR62021859 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.9e-16 89.0 69 63.8
Lj2g0013565 Lotus japonicus HOM05D003820 ORTHO05D004540 1.9e-16 89.0 69 63.8
Lj6g0008289 Lotus japonicus HOM05D003820 ORTHO05D004540 1.9e-16 89.0 69 63.8
SGA_v2.0_scaffold4G01876 Striga asiatica HOM05D003820 ORTHO05D004540 1.9e-16 89.0 65 67.7
ECA233G4304 Erigeron canadensis HOM05D003820 ORTHO05D004540 2.4e-16 88.6 63 71.4
Os09g0407900 Oryza sativa ssp. japonica HOM05D003820 ORTHO05D004540 2.4e-16 88.6 69 65.2
ATR0712G044 Amborella trichopoda HOM05D003820 ORTHO05D004540 3.2e-16 88.2 69 63.8
DCAR_008620 Daucus carota HOM05D003820 ORTHO05D004540 3.2e-16 88.2 64 68.8
Eucgr.H03283 Eucalyptus grandis HOM05D003820 ORTHO05D004540 3.2e-16 88.2 69 65.2
FAN21G2909 Fragaria x ananassa HOM05D003820 ORTHO05D004540 3.2e-16 88.2 69 65.2
FAN25G1165 Fragaria x ananassa HOM05D003820 ORTHO05D004540 3.2e-16 88.2 69 65.2
Lsat_1_v5_gn_7_13661 Lactuca sativa HOM05D003820 ORTHO05D004540 3.2e-16 88.2 65 69.2
EL10Ac8g20189 Beta vulgaris HOM05D003820 ORTHO05D004540 4.1e-16 87.8 65 66.2
Cc09_g00870 Coffea canephora HOM05D003820 ORTHO05D004540 4.1e-16 87.8 69 63.8
MD10G1331700 Malus domestica HOM05D003820 ORTHO05D004540 4.1e-16 87.8 69 66.7
Peaxi162Scf00199g00923 Petunia axillaris HOM05D003820 ORTHO05D004540 5.4e-16 87.4 64 67.2
MSTRG.16027 Avicennia marina HOM05D003820 ORTHO05D004540 7.0e-16 87.0 61 72.1
Haze_06920 Corylus avellana HOM05D003820 ORTHO05D004540 7.0e-16 87.0 69 66.7
Hma1.2p1_2009F.1_g310970 Hydrangea macrophylla HOM05D003820 ORTHO05D004540 7.0e-16 87.0 69 65.2
Solyc02g068480.3 Solanum lycopersicum HOM05D003820 ORTHO05D004540 7.0e-16 87.0 69 63.8
Ca_00446_v3 Cicer arietinum L. HOM05D003820 ORTHO05D004540 9.2e-16 86.7 69 63.8
Medtr4g077320 Medicago truncatula HOM05D003820 ORTHO05D004540 9.2e-16 86.7 64 67.2
Medtr4g077490 Medicago truncatula HOM05D003820 ORTHO05D004540 9.2e-16 86.7 64 67.2
Pp3c2_2850 Physcomitrium patens HOM05D003820 ORTHO05D004540 9.2e-16 86.7 61 68.9
Peaxi162Scf00610g00120 Petunia axillaris HOM05D003820 ORTHO05D004540 1.2e-15 86.3 62 66.1
Nn1g07382 Nelumbo nucifera HOM05D003820 ORTHO05D004540 1.6e-15 85.9 66 66.7
FvH4_3g00980 Fragaria vesca HOM05D003820 ORTHO05D004540 2.7e-15 85.1 69 63.8
Ah.14g087640 Amaranthus hybridus HOM05D003820 ORTHO05D004540 4.6e-15 84.3 64 65.6
Lj2C282T7 Lonicera japonica HOM05D003820 ORTHO05D004540 4.6e-15 84.3 65 66.2
TPR.G23689 Trifolium pratense HOM05D003820 ORTHO05D004540 4.6e-15 84.3 61 68.9
MD05G1357700 Malus domestica HOM05D003820 ORTHO05D004540 6.0e-15 84.0 69 63.8
TPR.G33399 Trifolium pratense HOM05D003820 ORTHO05D004540 7.8e-15 83.6 65 66.2
HPP92_017772 Vanilla planifolia HOM05D003820 ORTHO05D004540 1.0e-14 83.2 61 67.2
Cpa.g.sc109.39 Carica papaya HOM05D003820 ORTHO05D004540 1.3e-14 82.8 65 61.5
Duzib192G0171 Durio zibethinus HOM05D003820 ORTHO05D004540 1.7e-14 82.4 55 74.5
Aa31LG6G4450 Aethionema arabicum HOM05D003820 ORTHO05D004540 2.3e-14 82.0 65 64.6
Peaxi162Scf00177g00115 Petunia axillaris HOM05D003820 ORTHO05D004540 2.3e-14 82.0 64 62.5
Oeu051248.1 Olea europaea HOM05D003820 ORTHO05D004540 3.0e-14 81.6 59 69.5
SMO118G0007 Selaginella moellendorffii HOM05D003820 ORTHO05D004540 3.0e-14 81.6 60 70.0
THA.LOC104812993 Tarenaya hassleriana HOM05D003820 ORTHO05D004540 3.0e-14 81.6 69 60.9
Gohir.D06G159900 Gossypium hirsutum HOM05D003820 ORTHO05D004540 3.9e-14 81.3 55 72.7
Gohir.D06G216200 Gossypium hirsutum HOM05D003820 ORTHO05D004540 3.9e-14 81.3 55 72.7
Gorai.010G186600 Gossypium raimondii HOM05D003820 ORTHO05D004540 3.9e-14 81.3 55 72.7
HanXRQChr03g0086431 Helianthus annuus HOM05D003820 ORTHO05D004540 3.9e-14 81.3 62 64.5
Nitab4.5_0001735g0140 Nicotiana tabacum HOM05D003820 ORTHO05D004540 5.0e-14 80.9 69 58.0
SHI24460 Sapria himalayana HOM05D003820 ORTHO05D004540 5.0e-14 80.9 64 62.5
unitig_62.g23505 Utricularia gibba HOM05D003820 ORTHO05D004540 5.0e-14 80.9 63 65.1
Gorai.010G250000 Gossypium raimondii HOM05D003820 ORTHO05D004540 6.6e-14 80.5 55 72.7
Thecc.06G233400 Theobroma cacao HOM05D003820 ORTHO05D004540 6.6e-14 80.5 55 72.7
COL.COLO4_19462 Corchorus olitorius HOM05D003820 ORTHO05D004540 8.6e-14 80.1 55 70.9
FAN14G5460 Fragaria x ananassa HOM05D003820 ORTHO05D004540 8.6e-14 80.1 58 70.7
FvH4_6g03150 Fragaria vesca HOM05D003820 ORTHO05D004540 1.1e-13 79.7 58 70.7
FAN02G3088 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.1e-13 79.7 58 70.7
FAN09G3292 Fragaria x ananassa HOM05D003820 ORTHO05D004540 1.1e-13 79.7 58 70.7
Gohir.A06G153180 Gossypium hirsutum HOM05D003820 ORTHO05D004540 1.1e-13 79.7 55 70.9
HanXRQChr03g0086471 Helianthus annuus HOM05D003820 ORTHO05D004540 1.1e-13 79.7 62 62.9
Duzib235G0001 Durio zibethinus HOM05D003820 ORTHO05D004540 1.5e-13 79.3 57 70.2
Gohir.A06G205300 Gossypium hirsutum HOM05D003820 ORTHO05D004540 2.5e-13 78.6 55 69.1
COL.COLO4_14642 Corchorus olitorius HOM05D003820 ORTHO05D004540 5.6e-13 77.4 56 67.9
HanXRQChr03g0086521 Helianthus annuus HOM05D003820 ORTHO05D004540 5.6e-13 77.4 62 61.3
FAN05G3144 Fragaria x ananassa HOM05D003820 ORTHO05D004540 7.3e-13 77.0 58 69.0
FAN05G4407 Fragaria x ananassa HOM05D003820 ORTHO05D004540 7.3e-13 77.0 58 69.0
HanXRQChr03g0086481 Helianthus annuus HOM05D003820 ORTHO05D004540 9.5e-13 76.6 62 61.3
Lj6P617T46 Lonicera japonica HOM05D003820 ORTHO05D004540 1.2e-12 76.3 64 64.1
BraA03t14414Z Brassica rapa HOM05D003820 ORTHO05D004540 2.1e-12 75.5 70 57.1
Aqoxy5G01269 Aquilegia oxysepala HOM05D003820 ORTHO05D004540 2.8e-12 75.1 65 61.5
CBR_g53671 Chara braunii HOM05D003820 ORTHO05D004540 4.7e-12 74.3 52 65.4
A03p53480 Brassica napus HOM05D003820 ORTHO05D004540 1.1e-11 73.2 70 55.7
C07p51810 Brassica napus HOM05D003820 ORTHO05D004540 1.1e-11 73.2 70 55.7
BolC7t45683H Brassica oleracea HOM05D003820 ORTHO05D004540 1.1e-11 73.2 70 55.7
Cre17.g721600 Chlamydomonas reinhardtii HOM05D003820 ORTHO05D004540 2.3e-11 72.0 52 65.4
C01p16620 Brassica napus HOM05D003820 ORTHO05D004540 3.1e-11 71.6 59 61.0
BolC1t01609H Brassica oleracea HOM05D003820 ORTHO05D004540 3.1e-11 71.6 59 61.0
CARHR229260 Cardamine hirsuta HOM05D003820 ORTHO05D004540 3.1e-11 71.6 71 53.5
BcaNung01693 Brassica carinata HOM05D003820 ORTHO05D004540 6.8e-11 70.5 59 59.3
BcaNung02500 Brassica carinata HOM05D003820 ORTHO05D004540 6.8e-11 70.5 59 59.3
A01p13710 Brassica napus HOM05D003820 ORTHO05D004540 6.8e-11 70.5 59 59.3
BraA01t01316Z Brassica rapa HOM05D003820 ORTHO05D004540 6.8e-11 70.5 59 59.3
Carub.0007s1895 Capsella rubella HOM05D003820 ORTHO05D004540 6.8e-11 70.5 59 59.3
Thhalv10024723m.g Eutrema salsugineum HOM05D003820 ORTHO05D004540 6.8e-11 70.5 59 57.6
Sp7g20480 Schrenkiella parvula HOM05D003820 ORTHO05D004540 6.8e-11 70.5 59 59.3
AL7G31260 Arabidopsis lyrata HOM05D003820 ORTHO05D004540 8.9e-11 70.1 59 57.6
AT4G22285 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 2.0e-10 68.9 59 57.6
AT4G22350 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 2.0e-10 68.9 59 57.6
AT4G22410 Arabidopsis thaliana HOM05D003820 ORTHO05D004540 2.0e-10 68.9 59 57.6
AUR62003618 Chenopodium quinoa HOM05D003820 ORTHO05D004540 2.6e-10 68.6 66 50.0
AUR62017961 Chenopodium quinoa HOM05D003820 ORTHO05D004540 3.4e-10 68.2 61 52.5
A06p15880 Brassica napus HOM05D003820 ORTHO05D004540 2.2e-09 65.5 52 61.5
BraA06t24699Z Brassica rapa HOM05D003820 ORTHO05D004540 2.2e-09 65.5 52 61.5
MCO11G519 Micromonas commoda HOM05D003820 ORTHO05D004540 2.9e-09 65.1 59 54.2
AUR62030419 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.1e-08 63.2 61 49.2
AUR62014154 Chenopodium quinoa HOM05D003820 ORTHO05D004540 1.9e-08 62.4 61 49.2
HanXRQChr05g0129131 Helianthus annuus HOM05D003820 ORTHO05D004540 1.9e-08 62.4 46 69.6
Dinv07402 Davidia involucrata HOM05D003820 ORTHO05D004540 4.6e-07 57.8 44 63.6
COL.COLO4_31885 Corchorus olitorius HOM05D003820 ORTHO05D004540 7.8e-07 57.0 37 78.4


User provided reference genes

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