Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-76 289.7 154 100.0
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-71 272.3 154 96.1
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.2e-71 272.3 154 96.1
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 1.5e-70 269.6 154 95.5
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.2e-69 266.5 154 94.2
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 2.1e-69 265.8 151 95.4
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-69 265.0 152 94.7
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 5.2e-68 261.2 154 93.5
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 5.0e-55 218.0 122 94.3
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-54 216.9 122 93.4
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 3.3e-54 215.3 122 91.8
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.3e-54 214.9 122 91.8
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-53 212.6 122 90.2
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-53 212.6 122 89.3
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-53 212.6 122 90.2
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.6e-53 211.8 122 90.2
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-52 209.1 114 94.7
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.2e-52 208.0 121 90.1
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.4e-49 199.9 122 86.1
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 4.1e-49 198.4 122 85.2
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.6e-48 196.4 122 84.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.5e-48 195.3 122 85.2
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-47 193.0 122 83.6
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.7e-47 193.0 119 83.2
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.6e-47 190.7 122 83.6
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.6e-45 186.4 115 81.7
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.6e-45 186.4 123 78.0
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 2.1e-45 186.0 115 80.9
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.1e-45 186.0 119 81.5
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.8e-45 185.7 114 84.2
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 2.8e-45 185.7 115 83.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 2.8e-45 185.7 115 82.6
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 6.2e-45 184.5 115 82.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 6.2e-45 184.5 121 76.9
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.1e-44 183.7 123 75.6
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.1e-44 183.7 115 81.7
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.4e-44 183.3 119 79.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.4e-44 183.3 115 80.9
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.4e-44 183.3 115 80.9
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.4e-44 183.3 122 77.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.8e-44 183.0 121 79.3
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.3e-44 182.6 121 77.7
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.3e-44 182.6 117 76.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.3e-44 182.6 115 81.7
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.3e-44 182.6 114 80.7
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 3.1e-44 182.2 115 79.1
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 3.1e-44 182.2 114 81.6
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 3.1e-44 182.2 114 81.6
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.1e-44 182.2 115 78.3
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.0e-44 181.8 115 79.1
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 5.2e-44 181.4 115 80.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 5.2e-44 181.4 115 78.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 6.8e-44 181.0 115 82.6
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 6.8e-44 181.0 115 77.4
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 6.8e-44 181.0 120 78.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 8.9e-44 180.6 115 80.0
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 8.9e-44 180.6 115 80.0
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.2e-43 180.3 115 79.1
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.2e-43 180.3 114 80.7
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-43 179.9 115 78.3
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.0e-43 179.5 115 79.1
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.0e-43 179.5 117 78.6
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.6e-43 179.1 115 78.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.4e-43 178.3 115 80.0
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 4.4e-43 178.3 115 78.3
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 4.4e-43 178.3 114 80.7
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 5.8e-43 177.9 153 67.3
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 5.8e-43 177.9 122 75.4
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 5.8e-43 177.9 122 77.0
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 7.5e-43 177.6 120 75.0
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 7.5e-43 177.6 115 76.5
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 7.5e-43 177.6 117 76.9
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 7.5e-43 177.6 118 77.1
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 9.8e-43 177.2 115 75.7
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.3e-42 176.8 114 78.1
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 1.7e-42 176.4 122 73.8
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.7e-42 176.4 114 78.9
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.9e-42 175.6 115 77.4
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.9e-42 175.6 115 74.8
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.9e-42 175.6 115 74.8
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.9e-42 175.6 120 74.2
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.9e-42 175.6 115 78.3
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.9e-42 175.6 122 76.2
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 3.7e-42 175.3 122 74.6
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 3.7e-42 175.3 114 78.9
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 4.9e-42 174.9 114 78.9
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 4.9e-42 174.9 114 78.9
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 4.9e-42 174.9 114 78.9
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.9e-42 174.9 115 78.3
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 6.4e-42 174.5 117 76.9
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 6.4e-42 174.5 117 76.1
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 6.4e-42 174.5 117 76.1
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 6.4e-42 174.5 118 75.4
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 6.4e-42 174.5 138 66.7
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.4e-42 174.5 120 73.3
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 6.4e-42 174.5 111 79.3
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 8.3e-42 174.1 114 77.2
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.1e-41 173.7 120 73.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.4e-41 173.3 117 75.2
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.9e-41 172.9 114 76.3
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.9e-41 172.9 114 78.1
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 2.4e-41 172.6 117 75.2
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 3.2e-41 172.2 114 75.4
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.2e-41 172.2 117 75.2
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 4.1e-41 171.8 120 73.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 4.1e-41 171.8 117 75.2
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 4.1e-41 171.8 117 75.2
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 4.1e-41 171.8 117 75.2
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 4.1e-41 171.8 117 75.2
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 4.1e-41 171.8 117 75.2
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 4.1e-41 171.8 117 75.2
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 4.1e-41 171.8 117 75.2
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 4.1e-41 171.8 114 78.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 4.1e-41 171.8 114 75.4
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 7.1e-41 171.0 115 76.5
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 7.1e-41 171.0 114 76.3
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 9.2e-41 170.6 114 76.3
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.2e-40 170.2 115 79.1
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 2.7e-40 169.1 117 74.4
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 2.7e-40 169.1 117 74.4
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.0e-40 167.9 142 65.5
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 6.0e-40 167.9 117 74.4
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 7.8e-40 167.5 147 64.6
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.0e-39 165.6 123 73.2
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 3.0e-39 165.6 121 70.2
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.6e-38 161.4 111 73.0
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.6e-38 161.4 111 73.0
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 6.2e-37 157.9 172 54.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 3.1e-36 155.6 116 69.0
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.2e-35 153.7 119 65.5
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.0e-35 152.9 130 63.1
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 1.3e-34 150.2 116 63.8
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.7e-34 148.7 118 61.9
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 2.4e-33 146.0 165 52.7
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 3.2e-33 145.6 88 86.4
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 3.2e-33 145.6 116 60.3
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 3.5e-32 142.1 115 65.2
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 7.8e-32 141.0 115 67.0
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 6.6e-31 137.9 87 81.6
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.5e-30 136.7 88 80.7
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 7.3e-30 134.4 78 94.9
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 7.3e-30 134.4 78 94.9
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 4.7e-29 131.7 78 92.3
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.8e-28 129.8 92 78.3
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-26 123.6 72 94.4
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 3.8e-26 122.1 209 39.2
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 3.0e-23 112.5 70 80.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 3.0e-23 112.5 77 75.3
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 6.9e-20 101.3 64 79.7
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 4.4e-19 98.6 115 44.3
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 3.8e-18 95.5 114 42.1
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 7.1e-17 91.3 61 65.6
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.3e-14 81.3 69 68.1
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 9.6e-14 80.9 74 54.1
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 9.6e-14 80.9 74 54.1
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 4.8e-13 78.6 74 52.7
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 4.8e-13 78.6 69 66.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-12 77.4 59 71.2
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.8e-12 76.6 117 35.9
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 9.9e-11 70.9 51 72.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 9.9e-11 70.9 51 72.5
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 2.9e-10 69.3 51 62.7
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 6.4e-10 68.2 108 32.4
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 4.6e-08 62.0 38 89.5
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.5e-06 57.0 62 54.8
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 4.3e-06 55.5 47 55.3


User provided reference genes

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