Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391611 Rosa chinensis HOM05D002293 ORTHO05D006850 1.1e-33 146.0 72 100.0
RcHm_v2.0_Chr6g0248211 Rosa chinensis HOM05D002293 ORTHO05D006850 1.5e-33 145.6 71 100.0
RcHm_v2.0_Chr3g0461771 Rosa chinensis HOM05D002293 ORTHO05D006850 7.4e-33 143.3 71 98.6
RcHm_v2.0_Chr5g0060841 Rosa chinensis HOM05D002293 ORTHO05D006850 7.4e-33 143.3 71 98.6
RcHm_v2.0_Chr5g0074521 Rosa chinensis HOM05D002293 ORTHO05D006850 7.4e-33 143.3 71 98.6
RcHm_v2.0_Chr2g0158691 Rosa chinensis HOM05D002293 ORTHO05D006850 4.8e-32 140.6 71 97.2
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.0e-18 96.3 63 76.2
FvH4_1g22881 Fragaria vesca HOM05D002293 ORTHO05D006850 2.3e-18 95.1 63 74.6
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.3e-18 95.1 63 74.6
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.9e-18 94.4 63 74.6
RcHm_v2.0_Chr2g0117221 Rosa chinensis HOM05D002293 ORTHO05D006850 3.9e-18 94.4 63 74.6
RcHm_v2.0_Chr3g0477511 Rosa chinensis HOM05D002293 ORTHO05D006850 9.7e-17 89.7 53 83.0
CiPaw.04G090700 Carya illinoinensis HOM05D002293 ORTHO05D006850 1.3e-16 89.4 62 71.0
QL06p031806 Quercus lobata HOM05D002293 ORTHO05D006850 1.6e-16 89.0 69 65.2
Haze_25058 Corylus avellana HOM05D002293 ORTHO05D006850 2.2e-16 88.6 61 72.1
Dinv19472 Davidia involucrata HOM05D002293 ORTHO05D006850 2.8e-16 88.2 63 68.3
Nn5g28872 Nelumbo nucifera HOM05D002293 ORTHO05D006850 2.8e-16 88.2 60 73.3
PSO675G5492 Papaver somniferum HOM05D002293 ORTHO05D006850 2.8e-16 88.2 61 72.1
Prupe.6G169400 Prunus persica HOM05D002293 ORTHO05D006850 2.8e-16 88.2 60 71.7
arahy.Tifrunner.gnm1.ann1.U9B4SP Arachis hypogaea HOM05D000087 ORTHO05D000439 3.7e-16 87.8 60 73.3
Lj4A864T21 Lonicera japonica HOM05D002293 ORTHO05D006850 3.7e-16 87.8 60 73.3
Os06g0146400 Oryza sativa ssp. japonica HOM05D002293 ORTHO05D006850 6.3e-16 87.0 65 64.6
Aqoxy6G00443 Aquilegia oxysepala HOM05D002293 ORTHO05D006850 8.2e-16 86.7 61 70.5
CAN.G871.5 Capsicum annuum HOM05D002293 ORTHO05D006850 8.2e-16 86.7 61 68.9
ClCG01G015990 Citrullus lanatus HOM05D002293 ORTHO05D006850 8.2e-16 86.7 63 66.7
Oeu044096.1 Olea europaea HOM05D002293 ORTHO05D006850 8.2e-16 86.7 63 65.1
Eucgr.I00313 Eucalyptus grandis HOM05D002293 ORTHO05D006850 1.1e-15 86.3 61 67.2
Nitab4.5_0004378g0040 Nicotiana tabacum HOM05D002293 ORTHO05D006850 1.1e-15 86.3 61 67.2
Peaxi162Scf00167g00513 Petunia axillaris HOM05D002293 ORTHO05D006850 1.1e-15 86.3 60 70.0
PSO541G6313 Papaver somniferum HOM05D002293 ORTHO05D006850 1.4e-15 85.9 61 70.5
A05p39450 Brassica napus HOM05D002293 ORTHO05D006850 1.8e-15 85.5 71 60.6
BraA05t22726Z Brassica rapa HOM05D002293 ORTHO05D006850 1.8e-15 85.5 71 60.6
CsaV3_6G042270 Cucumis sativus L. HOM05D002293 ORTHO05D006850 1.8e-15 85.5 63 66.7
Nitab4.5_0000818g0200 Nicotiana tabacum HOM05D002293 ORTHO05D006850 1.8e-15 85.5 61 67.2
arahy.Tifrunner.gnm1.ann1.X6B8P2 Arachis hypogaea HOM05D002293 ORTHO05D006850 2.4e-15 85.1 60 70.0
MELO3C007469.2 Cucumis melo HOM05D002293 ORTHO05D006850 2.4e-15 85.1 63 65.1
Lsat_1_v5_gn_5_39360 Lactuca sativa HOM05D002293 ORTHO05D006850 2.4e-15 85.1 63 68.3
MD15G1331200 Malus domestica HOM05D002293 ORTHO05D006850 2.4e-15 85.1 61 67.2
Sed0022357 Sechium edule HOM05D002293 ORTHO05D006850 3.1e-15 84.7 63 65.1
CANSAT01G3021 Cannabis sativa HOM05D002293 ORTHO05D006850 4.1e-15 84.3 60 66.7
TWI75G0731 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 4.1e-15 84.3 59 69.5
Zm00001eb377130 Zea mays HOM05D002293 ORTHO05D006850 4.1e-15 84.3 60 68.3
ATR1120G068 Amborella trichopoda HOM05D002293 ORTHO05D006850 5.3e-15 84.0 72 59.7
Phvul.002G265600 Phaseolus vulgaris HOM05D002293 ORTHO05D006850 5.3e-15 84.0 63 63.5
Actinidia12213 Actinidia chinensis HOM05D002293 ORTHO05D006850 6.9e-15 83.6 73 61.6
DCAR_011459 Daucus carota HOM05D002293 ORTHO05D006850 6.9e-15 83.6 63 63.5
Glyma.08G142700 Glycine max HOM05D002293 ORTHO05D006850 6.9e-15 83.6 62 62.9
Solyc05g051700.3 Solanum lycopersicum HOM05D002293 ORTHO05D006850 6.9e-15 83.6 61 67.2
Gohir.A10G084000 Gossypium hirsutum HOM05D002293 ORTHO05D006850 9.0e-15 83.2 61 63.9
Rhsim07G0116300 Rhododendron simsii HOM05D002293 ORTHO05D006850 9.0e-15 83.2 61 65.6
Rhsim08G0005400 Rhododendron simsii HOM05D002293 ORTHO05D006850 9.0e-15 83.2 61 65.6
TWI79G1666 Tripterygium wilfordii HOM05D002293 ORTHO05D006850 9.0e-15 83.2 60 66.7
ECA246G2776 Erigeron canadensis HOM05D002293 ORTHO05D006850 1.5e-14 82.4 71 59.2
Medtr8g092030 Medicago truncatula HOM05D002293 ORTHO05D006850 1.5e-14 82.4 65 61.5
Sopen05g030170 Solanum pennellii HOM05D002293 ORTHO05D006850 1.5e-14 82.4 58 69.0
vmacro18641 Vaccinium macrocarpon HOM05D002293 ORTHO05D006850 1.5e-14 82.4 59 66.1
TPR.G2175 Trifolium pratense HOM05D002293 ORTHO05D006850 2.0e-14 82.0 60 66.7
MSTRG.15755 Avicennia marina HOM05D002293 ORTHO05D006850 2.6e-14 81.6 59 66.1
BcaC03g13134 Brassica carinata HOM05D002293 ORTHO05D006850 2.6e-14 81.6 60 63.3
SalBow5G0495 Salvia bowleyana HOM05D002293 ORTHO05D006850 2.6e-14 81.6 60 66.7
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.6e-14 81.6 60 65.0
Ah.03g141650 Amaranthus hybridus HOM05D002293 ORTHO05D006850 3.4e-14 81.3 57 66.7
Gorai.011G114300 Gossypium raimondii HOM05D002293 ORTHO05D006850 3.4e-14 81.3 61 62.3
Thecc.01G114900 Theobroma cacao HOM05D002293 ORTHO05D006850 3.4e-14 81.3 61 63.9
A08p33930 Brassica napus HOM05D002293 ORTHO05D006850 4.5e-14 80.9 58 67.2
C08p13740 Brassica napus HOM05D002293 ORTHO05D006850 4.5e-14 80.9 70 60.0
BraA08t35307Z Brassica rapa HOM05D002293 ORTHO05D006850 4.5e-14 80.9 58 67.2
Ca_17690_v3 Cicer arietinum L. HOM05D002293 ORTHO05D006850 4.5e-14 80.9 62 62.9
Glyma.05G184700 Glycine max HOM05D002293 ORTHO05D006850 4.5e-14 80.9 62 61.3
Cpa.g.sc72.2 Carica papaya HOM05D002293 ORTHO05D006850 5.9e-14 80.5 55 69.1
TAR628G0759 Trochodendron aralioides HOM05D002293 ORTHO05D006850 5.9e-14 80.5 58 65.5
Zm00001eb270460 Zea mays HOM05D002293 ORTHO05D006850 5.9e-14 80.5 57 68.4
Cc07_g16420 Coffea canephora HOM05D002293 ORTHO05D006850 7.7e-14 80.1 61 62.3
Thhalv10008651m.g Eutrema salsugineum HOM05D002293 ORTHO05D006850 7.7e-14 80.1 61 63.9
BcaC07g38568 Brassica carinata HOM05D002293 ORTHO05D006850 1.0e-13 79.7 70 58.6
BcaC07g38606 Brassica carinata HOM05D002293 ORTHO05D006850 1.0e-13 79.7 58 65.5
BolC8t49009H Brassica oleracea HOM05D002293 ORTHO05D006850 1.0e-13 79.7 70 58.6
COL.COLO4_10996 Corchorus olitorius HOM05D002293 ORTHO05D006850 1.0e-13 79.7 60 61.7
HanXRQChr12g0379751 Helianthus annuus HOM05D002293 ORTHO05D006850 1.0e-13 79.7 64 65.6
PGSC0003DMG400030100 Solanum tuberosum HOM05D002293 ORTHO05D006850 1.0e-13 79.7 61 63.9
SGA_v2.0_scaffold47G17699 Striga asiatica HOM05D002293 ORTHO05D006850 1.0e-13 79.7 61 63.9
AL1G21300 Arabidopsis lyrata HOM05D002293 ORTHO05D006850 1.3e-13 79.3 61 63.9
AT1G10500 Arabidopsis thaliana HOM05D002293 ORTHO05D006850 1.3e-13 79.3 61 63.9
arahy.Tifrunner.gnm1.ann1.G7CS59 Arachis hypogaea HOM05D002293 ORTHO05D006850 1.3e-13 79.3 58 67.2
Ciclev10026609m.g Citrus clementina HOM05D002293 ORTHO05D006850 1.3e-13 79.3 60 61.7
Migut.H02444 Erythranthe guttata HOM05D002293 ORTHO05D006850 1.3e-13 79.3 63 60.3
Gohir.D10G104800 Gossypium hirsutum HOM05D002293 ORTHO05D006850 1.3e-13 79.3 61 60.7
Lj4g0027809 Lotus japonicus HOM05D002293 ORTHO05D006850 1.3e-13 79.3 62 59.7
Potri.005G085400 Populus trichocarpa HOM05D002293 ORTHO05D006850 1.3e-13 79.3 59 62.7
Atru.chr4.430 Acer truncatum HOM05D002293 ORTHO05D006850 1.7e-13 79.0 59 64.4
BolC5t29625H Brassica oleracea HOM05D002293 ORTHO05D006850 1.7e-13 79.0 60 63.3
Sc03g0004470 Simmondsia chinensis HOM05D002293 ORTHO05D006850 1.7e-13 79.0 58 65.5
arahy.Tifrunner.gnm1.ann1.KS5C3R Arachis hypogaea HOM05D002293 ORTHO05D006850 2.2e-13 78.6 54 70.4
EL10Ac6g14773 Beta vulgaris HOM05D002293 ORTHO05D006850 2.2e-13 78.6 59 61.0
CARHR010640 Cardamine hirsuta HOM05D002293 ORTHO05D006850 2.2e-13 78.6 61 62.3
CARHR115310 Cardamine hirsuta HOM05D002293 ORTHO05D006850 2.2e-13 78.6 61 62.3
AUR62003296 Chenopodium quinoa HOM05D002293 ORTHO05D006850 2.2e-13 78.6 58 63.8
AUR62027166 Chenopodium quinoa HOM05D002293 ORTHO05D006850 2.2e-13 78.6 59 62.7
Manes.13G076424 Manihot esculenta HOM05D002293 ORTHO05D006850 2.2e-13 78.6 60 61.7
Psat7g050640 Pisum sativum HOM05D002293 ORTHO05D006850 2.2e-13 78.6 64 57.8
Potri.007G079600 Populus trichocarpa HOM05D002293 ORTHO05D006850 2.2e-13 78.6 59 61.0
CSS0045484 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 2.9e-13 78.2 59 62.7
Sp1g09130 Schrenkiella parvula HOM05D002293 ORTHO05D006850 2.9e-13 78.2 61 62.3
THA.LOC104823665 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 2.9e-13 78.2 57 64.9
A06p07270 Brassica napus HOM05D002293 ORTHO05D006850 3.8e-13 77.8 58 63.8
C05p08790 Brassica napus HOM05D002293 ORTHO05D006850 3.8e-13 77.8 58 63.8
BraA06t23933Z Brassica rapa HOM05D002293 ORTHO05D006850 3.8e-13 77.8 58 63.8
CSS0018890 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D006850 3.8e-13 77.8 59 62.7
CiPaw.03G133300 Carya illinoinensis HOM05D002293 ORTHO05D006850 5.0e-13 77.4 62 61.3
THA.LOC104816734 Tarenaya hassleriana HOM05D002293 ORTHO05D006850 5.0e-13 77.4 61 62.3
BcaC05g24873 Brassica carinata HOM05D002293 ORTHO05D006850 6.5e-13 77.0 59 62.7
BolC5t29624H Brassica oleracea HOM05D002293 ORTHO05D006850 6.5e-13 77.0 59 62.7
Lalb_Chr12g0203491 Lupinus albus HOM05D002293 ORTHO05D006850 6.5e-13 77.0 57 64.9
Aa31LG1G4450 Aethionema arabicum HOM05D002293 ORTHO05D006850 8.5e-13 76.6 54 66.7
Hma1.2p1_0375F.1_g138800 Hydrangea macrophylla HOM05D002293 ORTHO05D006850 8.5e-13 76.6 59 62.7
Sabra05G0070300 Salix brachista HOM05D002293 ORTHO05D006850 8.5e-13 76.6 59 61.0
C05p52480 Brassica napus HOM05D002293 ORTHO05D006850 1.9e-12 75.5 52 67.3
BcaC05g24931 Brassica carinata HOM05D002293 ORTHO05D006850 2.5e-12 75.1 58 60.3
Carub.0001s0993 Capsella rubella HOM05D002293 ORTHO05D006850 2.5e-12 75.1 59 59.3
GSVIVG01022247001 Vitis vinifera HOM05D002293 ORTHO05D006850 3.2e-12 74.7 53 67.9
BcaC06g34278 Brassica carinata HOM05D002294 ORTHO05D002367 4.2e-12 74.3 52 65.4
CDE06G1065 Ceratophyllum demersum HOM05D002293 ORTHO05D006850 4.2e-12 74.3 59 55.9
Hund03525 Selenicereus undatus HOM05D002293 ORTHO05D006850 4.2e-12 74.3 64 57.8
SEGI_15698 Sequoiadendron giganteum HOM05D002293 ORTHO05D006850 4.2e-12 74.3 59 59.3
unitig_899.g14611 Utricularia gibba HOM05D002293 ORTHO05D006850 4.2e-12 74.3 60 60.0
BolC7t43630H Brassica oleracea HOM05D002293 ORTHO05D006850 5.5e-12 73.9 52 65.4
CARHR053060 Cardamine hirsuta HOM05D002293 ORTHO05D006850 1.0e-10 69.7 54 57.4
PGR004G0821 Punica granatum HOM05D002293 ORTHO05D006850 1.4e-10 69.3 64 56.2
HPP92_023991 Vanilla planifolia HOM05D002293 ORTHO05D006850 6.7e-10 67.0 50 62.0
Pp3c1_29460 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.3e-08 62.8 51 52.9
BolC2t06175H Brassica oleracea HOM05D002293 ORTHO05D006850 3.7e-08 61.2 42 66.7
Pp3c2_12660 Physcomitrium patens HOM05D002293 ORTHO05D006850 4.8e-08 60.8 57 49.1
AagrBONN_evm.TU.Sc2ySwM_362.938 Anthoceros agrestis HOM05D000606 ORTHO05D001265 6.3e-08 60.5 54 51.9
SMO144G0175 Selaginella moellendorffii HOM05D002293 ORTHO05D006850 1.1e-07 59.7 56 46.4
Sabra07G0066800 Salix brachista HOM05D002293 ORTHO05D006850 1.4e-07 59.3 45 60.0
CBR_g72684 Chara braunii HOM05D002293 ORTHO05D006850 5.9e-06 53.9 58 44.8


User provided reference genes

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