Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0391111 Rosa chinensis HOM05D001120 ORTHO05D002943 2.0e-45 185.3 85 100.0
RcHm_v2.0_Chr2g0123811 Rosa chinensis HOM05D001120 ORTHO05D002943 2.1e-42 175.3 85 95.3
RcHm_v2.0_Chr1g0375401 Rosa chinensis HOM05D001120 ORTHO05D002943 1.1e-32 142.9 74 87.8
FvH4_7g28431 Fragaria vesca HOM05D001120 ORTHO05D002943 3.1e-30 134.8 73 87.7
FAN06G3100 Fragaria x ananassa HOM05D001120 ORTHO05D002943 4.0e-30 134.4 73 86.3
FAN10G1418 Fragaria x ananassa HOM05D001120 ORTHO05D002943 4.0e-30 134.4 73 86.3
FAN01G0606 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.0e-30 133.3 74 85.1
FAN03G1503 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.0e-30 133.3 74 85.1
FAN03G1927 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.0e-30 133.3 74 85.1
FAN06G0604 Fragaria x ananassa HOM05D001120 ORTHO05D002943 1.5e-29 132.5 73 86.3
RcHm_v2.0_Chr5g0031101 Rosa chinensis HOM05D001422 ORTHO05D001321 9.9e-29 129.8 63 93.7
vmacro06756 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 3.5e-26 121.3 74 70.3
Glyma.09G151800 Glycine max HOM05D001120 ORTHO05D002943 6.0e-26 120.6 74 73.0
MD07G1015000 Malus domestica HOM05D001120 ORTHO05D002943 7.9e-26 120.2 73 74.0
Ca_19532_v3 Cicer arietinum L. HOM05D001120 ORTHO05D002943 1.0e-25 119.8 74 71.6
VMungo0464G0810 Vigna mungo HOM05D001120 ORTHO05D002943 1.3e-25 119.4 74 71.6
Lj6g0021937 Lotus japonicus HOM05D001120 ORTHO05D002943 1.8e-25 119.0 74 71.6
Actinidia13529 Actinidia chinensis HOM05D001120 ORTHO05D002943 2.3e-25 118.6 73 71.2
Lalb_Chr25g0289251 Lupinus albus HOM05D001120 ORTHO05D002943 2.3e-25 118.6 75 68.0
MD01G1187900 Malus domestica HOM05D001120 ORTHO05D002943 2.3e-25 118.6 73 74.0
Medtr3g006860 Medicago truncatula HOM05D001120 ORTHO05D002943 2.3e-25 118.6 74 71.6
Phvul.004G125600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 2.3e-25 118.6 73 72.6
Prupe.2G284300 Prunus persica HOM05D001120 ORTHO05D002943 2.3e-25 118.6 70 77.1
Ciclev10004987m.g Citrus clementina HOM05D001120 ORTHO05D002943 3.9e-25 117.9 73 68.5
Lj8C35G5 Lonicera japonica HOM05D001120 ORTHO05D002943 5.1e-25 117.5 73 68.5
CSS0048333 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 6.7e-25 117.1 73 69.9
Dinv28521 Davidia involucrata HOM05D001120 ORTHO05D002943 6.7e-25 117.1 73 69.9
CANSAT21G0609 Cannabis sativa HOM05D001120 ORTHO05D002943 1.1e-24 116.3 74 70.3
CANSAT21G2509 Cannabis sativa HOM05D001120 ORTHO05D002943 1.1e-24 116.3 74 70.3
ClCG05G007580 Citrullus lanatus HOM05D001120 ORTHO05D002943 1.1e-24 116.3 74 70.3
Lj2g0010051 Lotus japonicus HOM05D001120 ORTHO05D002943 1.1e-24 116.3 74 68.9
PSO478G1970 Papaver somniferum HOM05D001120 ORTHO05D002943 1.1e-24 116.3 74 63.5
PSO782G1143 Papaver somniferum HOM05D001120 ORTHO05D002943 1.1e-24 116.3 74 63.5
Cfa008242 Carpinus fangiana HOM05D001120 ORTHO05D004313 1.5e-24 115.9 73 69.9
CiPaw.03G098500 Carya illinoinensis HOM05D001120 ORTHO05D002943 1.5e-24 115.9 73 71.2
CsaV3_3G016470 Cucumis sativus L. HOM05D001120 ORTHO05D002943 1.5e-24 115.9 74 73.0
Medtr6g463380 Medicago truncatula HOM05D001120 ORTHO05D002943 1.5e-24 115.9 72 70.8
PSO478G4258 Papaver somniferum HOM05D001120 ORTHO05D002943 1.5e-24 115.9 74 66.2
Cc02_g03730 Coffea canephora HOM05D001120 ORTHO05D002943 1.9e-24 115.5 73 68.5
Haze_13809 Corylus avellana HOM05D001120 ORTHO05D002943 3.3e-24 114.8 73 68.5
Rhsim03G0173300 Rhododendron simsii HOM05D001120 ORTHO05D002943 3.3e-24 114.8 70 71.4
CSS0048489 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 4.3e-24 114.4 73 68.5
Sed0024680 Sechium edule HOM05D001120 ORTHO05D002943 4.3e-24 114.4 73 69.9
Aqoxy7G00546 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 5.6e-24 114.0 73 67.1
Psat1g105640 Pisum sativum HOM05D001120 ORTHO05D002943 5.6e-24 114.0 74 70.3
DCAR_018133 Daucus carota HOM05D001120 ORTHO05D002943 7.4e-24 113.6 73 67.1
PSO782G3773 Papaver somniferum HOM05D001120 ORTHO05D002943 7.4e-24 113.6 74 64.9
Cpa.g.sc3.252 Carica papaya HOM05D001120 ORTHO05D002943 9.6e-24 113.2 74 68.9
MD07G1260500 Malus domestica HOM05D001120 ORTHO05D002943 9.6e-24 113.2 73 71.2
THA.LOC104806528 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 9.6e-24 113.2 70 71.4
EL10Ac3g05764 Beta vulgaris HOM05D001120 ORTHO05D002943 1.3e-23 112.8 72 66.7
MELO3C006846.2 Cucumis melo HOM05D001120 ORTHO05D002943 1.3e-23 112.8 74 70.3
QL12p039198 Quercus lobata HOM05D001120 ORTHO05D002943 1.3e-23 112.8 73 68.5
CSS0024775 Camellia sinensis var. sinensis HOM05D001120 ORTHO05D002943 1.6e-23 112.5 73 67.1
Nn1g01163 Nelumbo nucifera HOM05D001120 ORTHO05D002943 1.6e-23 112.5 74 70.3
Solyc03g007000.4 Solanum lycopersicum HOM05D001120 ORTHO05D002943 1.6e-23 112.5 73 64.4
Sopen03g003000 Solanum pennellii HOM05D001120 ORTHO05D002943 1.6e-23 112.5 73 64.4
TWI23G0697 Tripterygium wilfordii HOM05D001120 ORTHO05D002943 1.6e-23 112.5 73 68.5
Nitab4.5_0000072g0150 Nicotiana tabacum HOM05D001120 ORTHO05D002943 2.1e-23 112.1 73 67.1
Nitab4.5_0006353g0020 Nicotiana tabacum HOM05D001120 ORTHO05D002943 2.8e-23 111.7 73 67.1
Eucgr.A02865 Eucalyptus grandis HOM05D001120 ORTHO05D002943 3.7e-23 111.3 70 68.6
MSTRG.27147 Avicennia marina HOM05D001120 ORTHO05D002943 4.8e-23 110.9 73 63.0
Sc19g0001810 Simmondsia chinensis HOM05D001120 ORTHO05D002943 4.8e-23 110.9 74 64.9
PGR042G0858 Punica granatum HOM05D001120 ORTHO05D002943 6.2e-23 110.5 74 67.6
TAR375G0839 Trochodendron aralioides HOM05D001120 ORTHO05D002943 6.2e-23 110.5 74 67.6
RcHm_v2.0_Chr4g0406741 Rosa chinensis HOM05D001120 ORTHO05D002943 8.2e-23 110.2 53 96.2
PGSC0003DMG400031017 Solanum tuberosum HOM05D001120 ORTHO05D002943 8.2e-23 110.2 73 63.0
Peaxi162Scf00192g00835 Petunia axillaris HOM05D001120 ORTHO05D002943 1.4e-22 109.4 73 63.0
Hma1.2p1_0488F.1_g163780 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 2.4e-22 108.6 73 63.0
AUR62021289 Chenopodium quinoa HOM05D001120 ORTHO05D002943 4.0e-22 107.8 72 62.5
Duzib084G0753 Durio zibethinus HOM05D001120 ORTHO05D002943 4.0e-22 107.8 71 64.8
arahy.Tifrunner.gnm1.ann1.0ZDL97 Arachis hypogaea HOM05D001120 ORTHO05D002943 5.3e-22 107.5 73 67.1
Dinv08003 Davidia involucrata HOM05D001120 ORTHO05D002943 5.3e-22 107.5 73 65.8
Lsat_1_v5_gn_8_7961 Lactuca sativa HOM05D001120 ORTHO05D002943 5.3e-22 107.5 71 64.8
unitig_52.g17752 Utricularia gibba HOM05D001120 ORTHO05D002943 5.3e-22 107.5 73 63.0
CAN.G1409.5 Capsicum annuum HOM05D001120 ORTHO05D002943 6.9e-22 107.1 73 61.6
Gohir.A09G178700 Gossypium hirsutum HOM05D001120 ORTHO05D002943 9.0e-22 106.7 73 64.4
Gohir.D09G174300 Gossypium hirsutum HOM05D001120 ORTHO05D002943 9.0e-22 106.7 73 64.4
Gorai.006G196300 Gossypium raimondii HOM05D001120 ORTHO05D002943 9.0e-22 106.7 73 64.4
HanXRQChr05g0141341 Helianthus annuus HOM05D001120 ORTHO05D002943 9.0e-22 106.7 70 65.7
AUR62016080 Chenopodium quinoa HOM05D001120 ORTHO05D002943 1.5e-21 105.9 72 62.5
Thecc.03G163900 Theobroma cacao HOM05D001120 ORTHO05D002943 1.5e-21 105.9 71 63.4
Migut.F01165 Erythranthe guttata HOM05D001120 ORTHO05D002943 2.0e-21 105.5 73 57.5
Gohir.A07G039900 Gossypium hirsutum HOM05D001120 ORTHO05D002943 2.0e-21 105.5 71 66.2
Gorai.001G047100 Gossypium raimondii HOM05D001120 ORTHO05D002943 2.0e-21 105.5 71 66.2
Potri.012G131100 Populus trichocarpa HOM05D001120 ORTHO05D002943 3.4e-21 104.8 74 66.2
arahy.Tifrunner.gnm1.ann1.16TVZ1 Arachis hypogaea HOM05D001120 ORTHO05D002943 4.5e-21 104.4 73 65.8
MBI12_g37712_MAGBIO Magnolia biondii HOM05D001120 ORTHO05D002943 4.5e-21 104.4 74 60.8
Rhsim09G0194100 Rhododendron simsii HOM05D001120 ORTHO05D002943 7.6e-21 103.6 74 62.2
ATR0757G141 Amborella trichopoda HOM05D001120 ORTHO05D002943 1.0e-20 103.2 67 68.7
Hund04661 Selenicereus undatus HOM05D001120 ORTHO05D002943 1.0e-20 103.2 70 65.7
SGA_v2.0_scaffold10G05437 Striga asiatica HOM05D001120 ORTHO05D002943 1.3e-20 102.8 65 67.7
Thhalv10013554m.g Eutrema salsugineum HOM05D001120 ORTHO05D002943 1.7e-20 102.4 71 63.4
Manes.06G139500 Manihot esculenta HOM05D001120 ORTHO05D002943 1.7e-20 102.4 74 63.5
Ah.13g067550 Amaranthus hybridus HOM05D001120 ORTHO05D002943 2.2e-20 102.1 71 60.6
COL.COLO4_14203 Corchorus olitorius HOM05D001120 ORTHO05D004313 2.2e-20 102.1 74 60.8
Glyma.06G289600 Glycine max HOM05D001120 ORTHO05D002943 2.2e-20 102.1 74 62.2
Hund11789 Selenicereus undatus HOM05D001120 ORTHO05D002943 3.8e-20 101.3 70 61.4
HPP92_007982 Vanilla planifolia HOM05D001120 ORTHO05D002943 3.8e-20 101.3 74 60.8
Sabra12G0098600 Salix brachista HOM05D001120 ORTHO05D004313 4.9e-20 100.9 74 63.5
AT5G51740 Arabidopsis thaliana HOM05D001120 ORTHO05D002943 8.4e-20 100.1 70 65.7
GSVIVG01018475001 Vitis vinifera HOM05D001120 ORTHO05D002943 1.4e-19 99.4 66 65.2
Oeu021740.1 Olea europaea HOM05D001120 ORTHO05D002943 1.9e-19 99.0 67 62.7
ECA233G6122 Erigeron canadensis HOM05D001120 ORTHO05D002943 2.5e-19 98.6 70 60.0
Aa31LG3G8190 Aethionema arabicum HOM05D001120 ORTHO05D002943 3.2e-19 98.2 70 62.9
SEGI_40718 Sequoiadendron giganteum HOM05D001120 ORTHO05D002943 3.2e-19 98.2 71 63.4
Glyma.12G117400 Glycine max HOM05D001120 ORTHO05D002943 4.2e-19 97.8 74 59.5
arahy.Tifrunner.gnm1.ann1.BDNL9H Arachis hypogaea HOM05D001120 ORTHO05D002943 2.1e-18 95.5 73 61.6
Lsat_1_v5_gn_8_157341 Lactuca sativa HOM05D001120 ORTHO05D002943 2.1e-18 95.5 67 59.7
BcaC04g20640 Brassica carinata HOM05D001120 ORTHO05D002943 2.7e-18 95.1 70 60.0
C09p41150 Brassica napus HOM05D001120 ORTHO05D002943 2.7e-18 95.1 70 60.0
BolC9t56993H Brassica oleracea HOM05D001120 ORTHO05D002943 2.7e-18 95.1 70 60.0
CARHR264600 Cardamine hirsuta HOM05D001120 ORTHO05D002943 2.7e-18 95.1 70 58.6
BcaB08g35521 Brassica carinata HOM05D001120 ORTHO05D002943 3.5e-18 94.7 70 58.6
A10p09590 Brassica napus HOM05D001120 ORTHO05D002943 3.5e-18 94.7 70 62.9
BraA10t43035Z Brassica rapa HOM05D001120 ORTHO05D002943 3.5e-18 94.7 70 62.9
CDE11G0287 Ceratophyllum demersum HOM05D001120 ORTHO05D002943 3.5e-18 94.7 70 58.6
arahy.Tifrunner.gnm1.ann1.X1WI1D Arachis hypogaea HOM05D001120 ORTHO05D002943 6.0e-18 94.0 73 60.3
arahy.Tifrunner.gnm1.ann1.XVWX7G Arachis hypogaea HOM05D001120 ORTHO05D002943 1.0e-17 93.2 73 58.9
Medtr6g079410 Medicago truncatula HOM05D001120 ORTHO05D002943 1.0e-17 93.2 73 60.3
vmacro09881 Vaccinium macrocarpon HOM05D001120 ORTHO05D002943 1.3e-17 92.8 75 56.0
AL8G26010 Arabidopsis lyrata HOM05D001120 ORTHO05D002943 2.3e-17 92.0 70 61.4
RcHm_v2.0_Chr1g0375391 Rosa chinensis HOM05D001120 ORTHO05D002943 6.7e-17 90.5 86 57.0
THA.LOC104811503 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 1.1e-16 89.7 69 56.5
arahy.Tifrunner.gnm1.ann1.Q1XR2M Arachis hypogaea HOM05D001120 ORTHO05D002943 1.5e-16 89.4 73 57.5
arahy.Tifrunner.gnm1.ann1.2Y8ZXL Arachis hypogaea HOM05D001120 ORTHO05D002943 5.7e-16 87.4 73 56.2
Os02g0735100 Oryza sativa ssp. japonica HOM05D001120 ORTHO05D002943 5.7e-16 87.4 68 52.9
SGA_v2.0_scaffold337G49175 Striga asiatica HOM05D001120 ORTHO05D002943 5.7e-16 87.4 57 66.7
THA.LOC104825185 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 5.7e-16 87.4 70 51.4
arahy.Tifrunner.gnm1.ann1.ZX35QI Arachis hypogaea HOM05D001120 ORTHO05D002943 7.4e-16 87.0 73 56.2
Pp3c23_3440 Physcomitrium patens HOM05D001120 ORTHO05D002943 1.6e-15 85.9 66 57.6
FvH4_7g28432 Fragaria vesca HOM05D001120 ORTHO05D002943 6.3e-15 84.0 70 60.0
FAN06G0193 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.3e-15 84.0 70 60.0
FAN06G2540 Fragaria x ananassa HOM05D001120 ORTHO05D002943 6.3e-15 84.0 70 60.0
Mapoly0030s0021 Marchantia polymorpha HOM05D001120 ORTHO05D002943 1.4e-14 82.8 66 54.5
Carub.0008s1176 Capsella rubella HOM05D001120 ORTHO05D002943 4.1e-14 81.3 80 53.8
Phvul.011G124600 Phaseolus vulgaris HOM05D001120 ORTHO05D002943 4.1e-14 81.3 74 55.4
Gohir.D07G044000 Gossypium hirsutum HOM05D001120 ORTHO05D002943 5.3e-14 80.9 71 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1247 Anthoceros agrestis HOM05D001120 ORTHO05D002943 1.2e-13 79.7 66 54.5
arahy.Tifrunner.gnm1.ann1.E4F5HJ Arachis hypogaea HOM05D001120 ORTHO05D002943 1.5e-13 79.3 68 55.9
THA.LOC104825079 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 7.7e-13 77.0 70 48.6
THA.LOC104825082 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 7.7e-13 77.0 71 47.9
PSO832G4332 Papaver somniferum HOM05D001120 ORTHO05D002943 5.0e-12 74.3 53 62.3
SMO172G0194 Selaginella moellendorffii HOM05D001120 ORTHO05D002943 8.5e-12 73.6 69 53.6
THA.LOC104825078 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 1.1e-11 73.2 62 51.6
VMungo1127G0245 Vigna mungo HOM05D001120 ORTHO05D002943 2.5e-11 72.0 70 51.4
ECA233G0610 Erigeron canadensis HOM05D001120 ORTHO05D002943 3.2e-11 71.6 52 63.5
CBR_g433 Chara braunii HOM05D001120 ORTHO05D002943 5.5e-11 70.9 62 48.4
arahy.Tifrunner.gnm1.ann1.35XLXM Arachis hypogaea HOM05D001120 ORTHO05D002943 7.2e-11 70.5 73 49.3
arahy.Tifrunner.gnm1.ann1.W17802 Arachis hypogaea HOM05D001120 ORTHO05D002943 7.2e-11 70.5 73 49.3
arahy.Tifrunner.gnm1.ann1.B50YZX Arachis hypogaea HOM05D001120 ORTHO05D002943 9.4e-11 70.1 61 55.7
FvH4_7g28430 Fragaria vesca HOM05D001120 ORTHO05D002943 9.4e-11 70.1 53 64.2
FAN06G4681 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.4e-11 70.1 53 64.2
FAN10G3067 Fragaria x ananassa HOM05D001120 ORTHO05D002943 9.4e-11 70.1 53 64.2
arahy.Tifrunner.gnm1.ann1.1V5DEN Arachis hypogaea HOM05D001120 ORTHO05D002943 2.7e-10 68.6 58 56.9
arahy.Tifrunner.gnm1.ann1.A2YXVA Arachis hypogaea HOM05D001120 ORTHO05D002943 3.6e-10 68.2 58 55.2
FAN06G2717 Fragaria x ananassa HOM05D001120 ORTHO05D002943 3.6e-10 68.2 53 62.3
THA.LOC104798865 Tarenaya hassleriana HOM05D001120 ORTHO05D002943 7.9e-10 67.0 69 43.5
PSO210G7235 Papaver somniferum HOM05D001120 ORTHO05D002943 3.0e-09 65.1 67 52.2
PSO478G1088 Papaver somniferum HOM05D001120 ORTHO05D002943 9.7e-08 60.1 62 53.2
Aqoxy5G03662 Aquilegia oxysepala HOM05D001120 ORTHO05D002943 4.8e-07 57.8 45 57.8
Eucgr.A02866 Eucalyptus grandis HOM05D001120 ORTHO05D002943 6.3e-07 57.4 52 55.8
Hma1.2p1_0033F.1_g020890 Hydrangea macrophylla HOM05D001120 ORTHO05D002943 8.2e-07 57.0 57 43.9


User provided reference genes

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