Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0491801 Rosa chinensis HOM05D000388 ORTHO05D009843 1.9e-50 202.2 101 100.0
RcHm_v2.0_CPg0502271 Rosa chinensis HOM05D000388 ORTHO05D009843 7.1e-50 200.3 101 98.0
Migut.D01348 Erythranthe guttata HOM05D000388 ORTHO05D009843 5.1e-48 194.1 101 94.1
Migut.J01359 Erythranthe guttata HOM05D000388 ORTHO05D009843 5.1e-48 194.1 101 94.1
CARHR281990 Cardamine hirsuta HOM05D000388 ORTHO05D009843 8.7e-48 193.4 101 93.1
Hma1.2p1_0051F.1_g029490 Hydrangea macrophylla HOM05D000388 ORTHO05D009843 1.1e-47 193.0 101 94.1
Sed0009296 Sechium edule HOM05D000388 ORTHO05D009843 1.1e-47 193.0 101 94.1
Sed0020360 Sechium edule HOM05D000388 ORTHO05D009843 1.1e-47 193.0 101 94.1
AL2G20790 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 2.5e-47 191.8 101 93.1
ATCG00330 Arabidopsis thaliana HOM05D000388 ORTHO05D009843 2.5e-47 191.8 101 93.1
BcaC04g20699 Brassica carinata HOM05D000388 ORTHO05D009843 2.5e-47 191.8 101 92.1
Gohir.D08G129080 Gossypium hirsutum HOM05D000388 ORTHO05D009843 4.3e-47 191.0 101 93.1
Lalb_Chr23g0270511 Lupinus albus HOM05D000388 ORTHO05D009843 4.3e-47 191.0 101 94.1
Potri.013G142336 Populus trichocarpa HOM05D000388 ORTHO05D009843 5.6e-47 190.7 101 93.1
Nn020s41509 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 93.1
Nn055s41931 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 93.1
Nn082s42681 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 93.1
Nn287s46145 Nelumbo nucifera HOM05D000388 ORTHO05D009843 7.4e-47 190.3 101 93.1
LjContig00318g0006350 Lotus japonicus HOM05D000388 ORTHO05D009843 9.6e-47 189.9 101 94.1
PGR111G0009 Punica granatum HOM05D000388 ORTHO05D009843 1.3e-46 189.5 101 93.1
HanXRQChr00c0272g0573001 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr00c0439g0574751 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr02g0041691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr04g0099341 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr05g0151391 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr07g0201051 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr08g0210251 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr10g0282451 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQChr11g0326691 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
HanXRQCPg0579911 Helianthus annuus HOM05D000388 ORTHO05D009843 1.6e-46 189.1 101 92.1
BNapus_Darmor_BZH_scaffold_253p00110 Brassica napus HOM05D000388 ORTHO05D009843 1.1e-45 186.4 101 90.1
BNapus_Darmor_BZH_scaffold_287p00030 Brassica napus HOM05D000388 ORTHO05D000473 1.1e-45 186.4 101 90.1
C09p40130 Brassica napus HOM05D000388 ORTHO05D009843 1.1e-45 186.4 101 90.1
BolC7t41727H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-45 186.4 101 90.1
BolSC29t60455H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-45 186.4 101 90.1
BolSC45t60943H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-45 186.4 101 90.1
BolSC46t60990H Brassica oleracea HOM05D000388 ORTHO05D000473 1.1e-45 186.4 101 90.1
BraSC140t45581Z Brassica rapa HOM05D000388 ORTHO05D000473 1.1e-45 186.4 101 90.1
BraSC151t45706Z Brassica rapa HOM05D000388 ORTHO05D009843 1.1e-45 186.4 101 90.1
BraSC179t45796Z Brassica rapa HOM05D000388 ORTHO05D000473 1.1e-45 186.4 101 90.1
CAN.G142.10 Capsicum annuum HOM05D000388 ORTHO05D009843 1.8e-45 185.7 101 91.1
CAN.G500.81 Capsicum annuum HOM05D000388 ORTHO05D009843 1.8e-45 185.7 101 91.1
CAN.G653.5 Capsicum annuum HOM05D000388 ORTHO05D009843 1.8e-45 185.7 101 91.1
Gohir.A03G019500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 5.3e-45 184.1 101 90.1
Thhalv10011029m.g Eutrema salsugineum HOM05D000388 ORTHO05D009843 9.0e-45 183.3 101 90.1
PSO548G0009 Papaver somniferum HOM05D000388 ORTHO05D009843 1.2e-44 183.0 101 89.1
Solyc00g500055.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.0e-44 182.2 99 91.9
Solyc00g500137.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.0e-44 182.2 99 91.9
Solyc00g500207.1 Solanum lycopersicum HOM05D000388 ORTHO05D009843 2.0e-44 182.2 99 91.9
AL2G21360 Arabidopsis lyrata HOM05D000388 ORTHO05D009843 1.0e-43 179.9 99 89.9
Gohir.A05G086166 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.0e-43 179.9 101 89.1
DCAR_032482 Daucus carota HOM05D000388 ORTHO05D009843 1.7e-43 179.1 101 88.1
TWI15G0535 Tripterygium wilfordii HOM05D000388 ORTHO05D009843 2.5e-42 175.3 101 86.1
A06p23300 Brassica napus HOM05D000388 ORTHO05D000473 7.1e-42 173.7 97 86.6
arahy.Tifrunner.gnm1.ann1.6B1C4L Arachis hypogaea HOM05D000388 ORTHO05D009843 1.2e-41 172.9 98 88.8
BolC9t56909H Brassica oleracea HOM05D000388 ORTHO05D009843 2.7e-41 171.8 94 89.4
Sed0021792 Sechium edule HOM05D000388 ORTHO05D009843 2.7e-41 171.8 101 85.1
CiPaw.10G111400 Carya illinoinensis HOM05D000388 ORTHO05D009843 7.9e-41 170.2 88 92.0
Gohir.A01G140300 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.3e-40 169.5 101 83.2
Gohir.D09G055500 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.3e-40 169.5 101 83.2
CAN.G679.7 Capsicum annuum HOM05D000388 ORTHO05D009843 1.8e-40 169.1 101 84.2
Medtr3g035610 Medicago truncatula HOM05D000388 ORTHO05D009843 6.7e-40 167.2 101 85.1
EL10Ac1g02280 Beta vulgaris HOM05D000388 ORTHO05D009843 1.1e-39 166.4 101 85.1
LjContig00489g0027265 Lotus japonicus HOM05D000388 ORTHO05D009843 5.7e-39 164.1 101 80.2
Gohir.A01G164720 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.3e-38 162.9 100 84.0
TAR629G1277 Trochodendron aralioides HOM05D000388 ORTHO05D009843 1.3e-38 162.9 86 94.2
Oeu062844.1 Olea europaea HOM05D000388 ORTHO05D009843 8.2e-38 160.2 99 80.8
Nitab4.5_0025922g0010 Nicotiana tabacum HOM05D000388 ORTHO05D009843 3.1e-37 158.3 86 91.9
Oeu017222.1 Olea europaea HOM05D000388 ORTHO05D009843 3.1e-37 158.3 101 79.2
Nitab4.5_0007186g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009843 4.5e-36 154.5 86 89.5
SEGI_01256 Sequoiadendron giganteum HOM05D000388 ORTHO05D009843 1.7e-35 152.5 101 75.2
Eucgr.C02020 Eucalyptus grandis HOM05D000388 ORTHO05D009843 1.1e-34 149.8 93 81.7
BolSC44t60854H Brassica oleracea HOM05D000388 ORTHO05D009843 1.3e-32 142.9 94 74.5
CSS0013534 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D009843 5.1e-32 141.0 79 91.1
Peaxi162Scf00575g00006 Petunia axillaris HOM05D000388 ORTHO05D009843 5.1e-32 141.0 70 91.4
CAN.G386.18 Capsicum annuum HOM05D000388 ORTHO05D000473 8.7e-32 140.2 74 87.8
Peaxi162Scf00455g00046 Petunia axillaris HOM05D000388 ORTHO05D009843 1.8e-29 132.5 76 88.2
Hund28396 Selenicereus undatus HOM05D000388 ORTHO05D009843 4.1e-29 131.3 95 72.6
arahy.Tifrunner.gnm1.ann1.FC7Y3W Arachis hypogaea HOM05D000388 ORTHO05D009843 4.5e-28 127.9 97 70.1
SMO086G0040 Selaginella moellendorffii HOM05D000388 ORTHO05D009843 5.0e-27 124.4 99 62.6
Gohir.A07G155821 Gossypium hirsutum HOM05D000388 ORTHO05D009843 1.1e-26 123.2 72 87.5
HanXRQChr00c0345g0573851 Helianthus annuus HOM05D000388 ORTHO05D009843 9.4e-26 120.2 56 96.4
EL10As15g24141 Beta vulgaris HOM05D000388 ORTHO05D009843 3.7e-22 108.2 64 89.1
Nitab4.5_0002607g0050 Nicotiana tabacum HOM05D000388 ORTHO05D009843 2.0e-20 102.4 62 87.1
Phvul.010G068900 Phaseolus vulgaris HOM05D000388 ORTHO05D009843 1.3e-19 99.8 48 91.7
EL10As28g24250 Beta vulgaris HOM05D000388 ORTHO05D000473 1.7e-19 99.4 56 82.1
HanXRQChr16g0506261 Helianthus annuus HOM05D000388 ORTHO05D009843 9.4e-18 93.6 57 86.0
Medtr5g063380 Medicago truncatula HOM05D000388 ORTHO05D009843 3.6e-17 91.7 48 87.5
CsaV3_6G032160 Cucumis sativus L. HOM05D000388 ORTHO05D009843 4.7e-17 91.3 91 60.4
Hund29903 Selenicereus undatus HOM05D000388 ORTHO05D009843 2.0e-12 75.9 51 82.4
Medtr8g079770 Medicago truncatula HOM05D000388 ORTHO05D009843 5.9e-12 74.3 51 80.4
arahy.Tifrunner.gnm1.ann1.A3NG1I Arachis hypogaea HOM05D000388 ORTHO05D009843 1.0e-11 73.6 95 48.4
Sopen10g013070 Solanum pennellii HOM05D000388 ORTHO05D009843 3.8e-11 71.6 33 90.9
arahy.Tifrunner.gnm1.ann1.90KAHV Arachis hypogaea HOM05D000388 ORTHO05D009843 6.5e-11 70.9 97 50.5
BolC9t56932H Brassica oleracea HOM05D000388 ORTHO05D009843 4.0e-08 61.6 27 96.3
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 2.0e-07 59.3 92 45.7
arahy.Tifrunner.gnm1.ann1.EPB7VR Arachis hypogaea HOM05D000176 ORTHO05D000106 4.4e-07 58.2 27 88.9
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.7e-06 56.2 92 44.6
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 1.7e-06 56.2 92 44.6
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 2.2e-06 55.8 91 41.8
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 2.2e-06 55.8 91 41.8
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 3.7e-06 55.1 95 45.3
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.8e-06 54.7 91 42.9
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 4.8e-06 54.7 91 42.9
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 4.8e-06 54.7 91 40.7
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 39.4
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 8.2e-06 53.9 90 40.0
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 44.2
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 8.2e-06 53.9 95 40.0
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 39.4
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 39.4
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 8.2e-06 53.9 94 39.4


User provided reference genes

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