Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 2.2e-102 375.6 182 100.0
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.8e-83 312.8 166 93.4
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 9.4e-69 263.8 156 84.0
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.1e-68 262.7 163 80.4
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 1.4e-67 260.0 163 80.4
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.4e-67 260.0 161 80.1
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 1.7e-65 253.1 161 78.9
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.7e-65 253.1 161 78.9
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 4.9e-65 251.5 164 78.0
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 4.9e-65 251.5 163 77.9
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 6.3e-65 251.1 164 78.0
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.1e-64 250.4 158 80.4
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 5.4e-64 248.1 158 78.5
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 5.9e-63 244.6 163 76.7
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 8.6e-62 240.7 163 76.1
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 7.0e-48 194.5 164 59.1
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.7e-47 192.6 138 67.4
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 2.7e-47 192.6 138 68.8
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 6.0e-47 191.4 138 68.8
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 6.0e-47 191.4 135 69.6
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 7.8e-47 191.0 139 67.6
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 3.0e-46 189.1 151 59.6
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 3.0e-46 189.1 151 59.6
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.0e-46 188.3 138 65.2
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 6.6e-46 188.0 138 66.7
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 8.6e-46 187.6 138 64.5
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.9e-45 186.4 140 66.4
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.9e-45 186.4 138 63.8
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.9e-45 186.4 138 63.8
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.5e-45 186.0 143 62.2
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 2.5e-45 186.0 129 67.4
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.3e-45 185.3 139 64.7
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 4.3e-45 185.3 167 58.7
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 7.3e-45 184.5 138 64.5
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 9.5e-45 184.1 138 64.5
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.2e-44 183.7 162 56.8
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 1.2e-44 183.7 139 66.2
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.6e-44 183.3 131 66.4
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 1.6e-44 183.3 148 61.5
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 2.1e-44 183.0 135 66.7
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 3.6e-44 182.2 145 64.1
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.6e-44 182.2 164 54.9
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 3.6e-44 182.2 164 54.9
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 3.6e-44 182.2 132 63.6
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 4.7e-44 181.8 130 66.2
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 4.7e-44 181.8 165 57.6
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 6.2e-44 181.4 144 61.8
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 6.2e-44 181.4 138 62.3
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 2.3e-43 179.5 140 62.9
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 5.2e-43 178.3 144 61.8
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 6.8e-43 177.9 138 62.3
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 6.8e-43 177.9 138 63.0
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 6.8e-43 177.9 138 63.0
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 1.2e-42 177.2 131 61.8
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 1.5e-42 176.8 165 55.2
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.6e-42 176.0 139 61.9
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 4.4e-42 175.3 131 59.5
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.4e-42 175.3 153 53.6
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 5.8e-42 174.9 153 53.6
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 5.8e-42 174.9 129 63.6
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 7.5e-42 174.5 134 62.7
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 1.3e-41 173.7 139 59.0
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.7e-41 173.3 140 61.4
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 1.7e-41 173.3 118 67.8
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 2.2e-41 172.9 145 56.6
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.9e-41 172.6 140 60.7
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 2.9e-41 172.6 139 61.2
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 2.9e-41 172.6 161 54.7
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 3.7e-41 172.2 142 57.0
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.9e-41 171.8 135 63.7
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 4.9e-41 171.8 148 55.4
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.1e-40 170.6 134 59.7
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.4e-40 170.2 139 61.2
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 5.4e-40 168.3 138 61.6
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 5.4e-40 168.3 138 61.6
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 7.1e-40 167.9 136 62.5
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 1.6e-39 166.8 139 57.6
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.6e-39 166.8 139 57.6
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.6e-39 166.8 138 60.1
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.1e-39 166.4 137 60.6
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 2.7e-39 166.0 142 57.7
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 2.7e-39 166.0 130 60.8
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 7.8e-39 164.5 140 56.4
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 7.8e-39 164.5 129 61.2
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 7.8e-39 164.5 139 55.4
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 1.0e-38 164.1 141 57.4
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 1.3e-38 163.7 145 53.1
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 1.7e-38 163.3 140 57.1
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 1.7e-38 163.3 139 58.3
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.7e-38 163.3 140 54.3
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 2.3e-38 162.9 140 57.1
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 3.0e-38 162.5 140 55.0
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.0e-38 162.5 129 58.9
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.9e-38 162.2 164 49.4
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.9e-38 162.2 140 57.1
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 6.6e-38 161.4 142 54.2
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 8.6e-38 161.0 129 59.7
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 8.6e-38 161.0 137 54.0
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 8.6e-38 161.0 137 54.0
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.9e-37 159.8 129 58.1
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 1.9e-37 159.8 129 58.1
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.5e-37 159.5 138 54.3
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.3e-37 158.7 139 56.8
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 4.3e-37 158.7 139 56.8
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 5.6e-37 158.3 141 55.3
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 7.3e-37 157.9 130 56.9
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 1.2e-36 157.1 139 56.1
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 2.1e-36 156.4 138 54.3
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 3.6e-36 155.6 138 55.8
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.1e-35 154.1 135 52.6
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.1e-35 154.1 153 51.0
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 2.3e-35 152.9 127 56.7
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 4.0e-35 152.1 118 61.9
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.0e-35 152.1 135 52.6
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 4.0e-35 152.1 135 51.9
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 5.2e-35 151.8 138 52.9
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.8e-35 151.4 139 52.5
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 6.8e-35 151.4 136 53.7
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-34 150.6 130 54.6
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-34 150.6 130 54.6
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-34 150.6 130 54.6
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-34 150.6 130 54.6
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-34 150.6 130 54.6
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 2.6e-34 149.4 144 51.4
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 2.6e-34 149.4 133 54.9
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.4e-34 148.7 134 53.0
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 7.6e-34 147.9 138 51.4
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.3e-33 147.1 121 57.9
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 3.8e-33 145.6 113 58.4
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.1e-32 144.1 125 53.6
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 1.1e-32 144.1 139 51.1
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.4e-32 143.7 116 58.6
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 4.1e-32 142.1 134 51.5
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 4.1e-32 142.1 120 60.0
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.2e-31 140.6 137 46.7
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 1.6e-31 140.2 173 42.8
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 7.8e-31 137.9 110 59.1
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 1.3e-30 137.1 134 50.7
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 1.7e-30 136.7 134 50.0
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 3.0e-30 136.0 120 53.3
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 1.9e-29 133.3 129 47.3
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 3.3e-29 132.5 129 46.5
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 9.6e-29 131.0 195 40.5
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 8.1e-28 127.9 106 59.4
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 2.4e-27 126.3 121 47.9
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 1.2e-26 124.0 163 39.9
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 2.0e-26 123.2 144 41.7
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 1.3e-25 120.6 134 43.3
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 1.7e-25 120.2 140 41.4
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.9e-25 118.6 125 46.4
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 4.9e-25 118.6 68 80.9
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 1.1e-24 117.5 125 44.8
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 3.2e-24 115.9 128 43.8
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 3.2e-24 115.9 89 59.6
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 7.1e-24 114.8 101 56.4
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 7.8e-23 111.3 108 46.3
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.0e-22 110.9 89 58.4
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 3.9e-22 109.0 70 74.3
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 4.8e-12 75.5 112 39.3
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.1e-07 60.1 38 65.8


User provided reference genes

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