Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0459031 Rosa chinensis HOM05D008155 ORTHO05D010411 1.6e-83 312.8 162 100.0
FAN02G1576 Fragaria x ananassa HOM05D008155 ORTHO05D010411 1.1e-65 253.4 160 83.8
FAN14G4286 Fragaria x ananassa HOM05D008155 ORTHO05D010411 9.6e-65 250.4 160 81.9
Prupe.6G302400 Prunus persica HOM05D008155 ORTHO05D010411 9.7e-33 144.1 169 55.0
FAN05G1014 Fragaria x ananassa HOM05D008155 ORTHO05D029618 2.1e-27 126.3 91 82.4
FAN09G0672 Fragaria x ananassa HOM05D008155 ORTHO05D029618 2.1e-27 126.3 91 78.0
FvH4_6g08770 Fragaria vesca HOM05D008155 ORTHO05D029618 3.6e-27 125.6 94 79.8
MD12G1197100 Malus domestica HOM05D008155 ORTHO05D010411 4.7e-27 125.2 144 51.4
QL03p011396 Quercus lobata HOM05D008155 ORTHO05D010411 4.1e-23 112.1 113 54.0
Cfa004403 Carpinus fangiana HOM05D008155 ORTHO05D010411 4.5e-22 108.6 164 43.3
MD04G1183800 Malus domestica HOM05D008155 ORTHO05D010411 7.7e-22 107.8 177 45.8
Haze_15003 Corylus avellana HOM05D008155 ORTHO05D010411 1.0e-21 107.5 164 43.3
Sopen01g044900 Solanum pennellii HOM05D008155 ORTHO05D010411 2.9e-21 105.9 153 45.8
CSS0018964 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 5.0e-21 105.1 154 50.6
Solyc01g102460.4 Solanum lycopersicum HOM05D008155 ORTHO05D010411 8.5e-21 104.4 150 45.3
CSS0011875 Camellia sinensis var. sinensis HOM05D008155 ORTHO05D010411 3.2e-20 102.4 112 50.9
TAR362G0658 Trochodendron aralioides HOM05D008155 ORTHO05D010411 1.0e-18 97.4 115 48.7
Ciclev10029557m.g Citrus clementina HOM05D008155 ORTHO05D010411 4.0e-18 95.5 125 44.8
Hma1.2p1_0157F.1_g069510 Hydrangea macrophylla HOM05D008155 ORTHO05D010411 7.5e-17 91.3 95 54.7
CANSAT54G1408 Cannabis sativa HOM05D008155 ORTHO05D010411 1.3e-16 90.5 168 40.5
Manes.09G182600 Manihot esculenta HOM05D008155 ORTHO05D010411 1.3e-16 90.5 110 50.9
Glyma.03G227200 Glycine max HOM05D008155 ORTHO05D010411 3.7e-16 89.0 121 44.6
Manes.08G106200 Manihot esculenta HOM05D008155 ORTHO05D010411 3.7e-16 89.0 120 44.2
PGSC0003DMG400018233 Solanum tuberosum HOM05D008155 ORTHO05D010411 4.8e-16 88.6 105 49.5
TAR365G0599 Trochodendron aralioides HOM05D008155 ORTHO05D010411 4.8e-16 88.6 105 47.6
Atru.chr12.1507 Acer truncatum HOM05D008155 ORTHO05D010411 6.3e-16 88.2 121 43.8
VMungo1383G2435 Vigna mungo HOM05D008155 ORTHO05D010411 6.3e-16 88.2 122 44.3
Glyma.19G224100 Glycine max HOM05D008155 ORTHO05D010411 4.1e-15 85.5 156 41.7
Phvul.001G221000 Phaseolus vulgaris HOM05D008155 ORTHO05D010411 5.4e-15 85.1 122 41.8
Atru.chr12.1502 Acer truncatum HOM05D008155 ORTHO05D010411 7.0e-15 84.7 117 43.6
Oeu034763.2 Olea europaea HOM05D008155 ORTHO05D010411 4.5e-14 82.0 100 49.0
SalBow8G5556 Salvia bowleyana HOM05D008155 ORTHO05D010411 4.5e-14 82.0 56 64.3
Aqoxy7G02124 Aquilegia oxysepala HOM05D008155 ORTHO05D010411 5.9e-14 81.6 106 44.3
Sed0023159 Sechium edule HOM05D008155 ORTHO05D010411 5.9e-14 81.6 110 47.3
MSTRG.5176 Avicennia marina HOM05D008155 ORTHO05D010411 1.0e-13 80.9 91 49.5
SalBow4G1718 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.0e-13 80.9 98 44.9
SalBow4G2153 Salvia bowleyana HOM05D008155 ORTHO05D010411 1.0e-13 80.9 98 44.9
COL.COLO4_05473 Corchorus olitorius HOM05D008155 ORTHO05D010411 2.2e-13 79.7 155 40.6
Migut.N00987 Erythranthe guttata HOM05D008155 ORTHO05D010411 2.9e-13 79.3 63 60.3
Thecc.05G331400 Theobroma cacao HOM05D008155 ORTHO05D010411 3.8e-13 79.0 96 47.9
EL10Ac6g15313 Beta vulgaris HOM05D008155 ORTHO05D010411 8.5e-13 77.8 96 46.9
vmacro19804 Vaccinium macrocarpon HOM05D003050 ORTHO05D003513 8.5e-13 77.8 124 41.1
TPR.G35721 Trifolium pratense HOM05D008155 ORTHO05D010411 1.9e-12 76.6 127 35.4
TWI56G0796 Tripterygium wilfordii HOM05D008155 ORTHO05D010411 2.5e-12 76.3 161 39.1
MELO3C004141.2 Cucumis melo HOM05D008155 ORTHO05D010411 3.2e-12 75.9 129 42.6
arahy.Tifrunner.gnm1.ann1.QRZ24D Arachis hypogaea HOM05D008155 ORTHO05D010411 5.5e-12 75.1 117 42.7
CsaV3_2G007430 Cucumis sativus L. HOM05D008155 ORTHO05D010411 3.6e-11 72.4 161 37.9
DCAR_022333 Daucus carota HOM05D008155 ORTHO05D010411 6.1e-11 71.6 90 46.7
ClCG02G014570 Citrullus lanatus HOM05D008155 ORTHO05D010411 8.0e-11 71.2 112 42.0
Potri.005G001100 Populus trichocarpa HOM05D008155 ORTHO05D010411 8.0e-11 71.2 111 37.8
Lsat_1_v5_gn_5_146861 Lactuca sativa HOM05D008155 ORTHO05D010411 2.3e-10 69.7 113 39.8
Potri.013G000200 Populus trichocarpa HOM05D008155 ORTHO05D010411 2.3e-10 69.7 118 38.1
Nitab4.5_0006193g0010 Nicotiana tabacum HOM05D008155 ORTHO05D010411 5.2e-10 68.6 47 66.0
Gohir.A13G206400 Gossypium hirsutum HOM05D008155 ORTHO05D010411 6.8e-10 68.2 98 39.8
Gorai.013G241100 Gossypium raimondii HOM05D008155 ORTHO05D010411 8.8e-10 67.8 98 37.8
Cpa.g.sc48.233 Carica papaya HOM05D008155 ORTHO05D010411 1.5e-09 67.0 117 41.9
Ah.03g147790 Amaranthus hybridus HOM05D008155 ORTHO05D010411 4.4e-09 65.5 97 37.1
Medtr7g111230 Medicago truncatula HOM05D008155 ORTHO05D010411 4.4e-09 65.5 52 51.9
Rhsim11G0107200 Rhododendron simsii HOM05D008155 ORTHO05D010411 4.4e-09 65.5 56 55.4
Sed0026568 Sechium edule HOM05D008155 ORTHO05D010411 7.5e-09 64.7 101 41.6
Lsat_1_v5_gn_1_75801 Lactuca sativa HOM05D008155 ORTHO05D010411 3.7e-08 62.4 111 42.3
Aa31LG11G10020 Aethionema arabicum HOM05D008255 ORTHO05D011943 1.8e-07 60.1 97 36.1
Sc03g0006010 Simmondsia chinensis HOM05D008155 ORTHO05D010411 3.1e-07 59.3 102 40.2
unitig_699.g19831 Utricularia gibba HOM05D008155 ORTHO05D010411 7.0e-07 58.2 47 53.2
SHI18006 Sapria himalayana HOM05D008155 ORTHO05D010411 9.2e-07 57.8 66 48.5


User provided reference genes

Program Settings