Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr3g0449681 Rosa chinensis HOM05D006938 ORTHO05D008600 8.0e-61 236.9 117 100.0
RcHm_v2.0_Chr4g0446461 Rosa chinensis HOM05D006938 ORTHO05D008600 3.5e-48 194.9 116 87.9
FvH4_4g36740 Fragaria vesca HOM05D006938 ORTHO05D008600 7.7e-48 193.7 116 87.1
FAN12G4276 Fragaria x ananassa HOM05D006938 ORTHO05D008600 7.7e-48 193.7 116 87.1
FAN17G2681 Fragaria x ananassa HOM05D006938 ORTHO05D008600 2.2e-47 192.2 116 86.2
Prupe.1G345500 Prunus persica HOM05D006938 ORTHO05D008600 9.4e-46 186.8 103 86.4
TAR629G2816 Trochodendron aralioides HOM05D006938 ORTHO05D008600 4.7e-45 184.5 102 85.3
CiPaw.09G164200 Carya illinoinensis HOM05D006938 ORTHO05D008600 6.1e-45 184.1 104 85.6
CANSAT64G2234 Cannabis sativa HOM05D006938 ORTHO05D008600 2.3e-44 182.2 104 85.6
TPR.G23154 Trifolium pratense HOM05D006938 ORTHO05D008600 3.0e-44 181.8 104 83.7
Eucgr.G00991 Eucalyptus grandis HOM05D006938 ORTHO05D008600 4.0e-44 181.4 104 84.6
Lj5g0002504 Lotus japonicus HOM05D006938 ORTHO05D008600 4.0e-44 181.4 104 81.7
Potri.002G062100 Populus trichocarpa HOM05D006938 ORTHO05D008600 4.0e-44 181.4 104 84.6
QL03p043666 Quercus lobata HOM05D006938 ORTHO05D008600 4.0e-44 181.4 104 82.7
Aqoxy3G04277 Aquilegia oxysepala HOM05D006938 ORTHO05D008600 6.8e-44 180.6 105 83.8
Sabra02G0050200 Salix brachista HOM05D006938 ORTHO05D008600 8.8e-44 180.3 104 84.6
Glyma.10G219400 Glycine max HOM05D006938 ORTHO05D008600 1.2e-43 179.9 104 83.7
Medtr1g097270 Medicago truncatula HOM05D006938 ORTHO05D008600 1.2e-43 179.9 108 78.7
Glyma.20G172300 Glycine max HOM05D006938 ORTHO05D008600 1.5e-43 179.5 104 82.7
MD13G1007500 Malus domestica HOM05D006938 ORTHO05D008600 1.5e-43 179.5 103 82.5
PGR142G2203 Punica granatum HOM05D006938 ORTHO05D008600 1.5e-43 179.5 104 80.8
ATR0618G369 Amborella trichopoda HOM05D006938 ORTHO05D008600 2.6e-43 178.7 104 80.8
GSVIVG01010180001 Vitis vinifera HOM05D006938 ORTHO05D008600 2.6e-43 178.7 100 84.0
ClCG09G005720 Citrullus lanatus HOM05D006938 ORTHO05D008600 3.4e-43 178.3 105 81.0
Dinv17599 Davidia involucrata HOM05D006938 ORTHO05D008600 4.4e-43 177.9 100 86.0
Lj6P721T41 Lonicera japonica HOM05D006938 ORTHO05D008600 4.4e-43 177.9 102 83.3
Psat6g189200 Pisum sativum HOM05D006938 ORTHO05D008600 4.4e-43 177.9 104 80.8
Actinidia11174 Actinidia chinensis HOM05D006938 ORTHO05D008600 5.7e-43 177.6 100 85.0
Phvul.007G086000 Phaseolus vulgaris HOM05D006938 ORTHO05D008600 5.7e-43 177.6 104 80.8
Cfa008713 Carpinus fangiana HOM05D006938 ORTHO05D008600 9.8e-43 176.8 104 81.7
Haze_11723 Corylus avellana HOM05D006938 ORTHO05D008600 9.8e-43 176.8 104 81.7
Ca_10639_v3 Cicer arietinum L. HOM05D006938 ORTHO05D008600 1.3e-42 176.4 103 79.6
MELO3C015984.2 Cucumis melo HOM05D006938 ORTHO05D008600 1.7e-42 176.0 105 80.0
CsaV3_7G029440 Cucumis sativus L. HOM05D006938 ORTHO05D008600 1.7e-42 176.0 105 80.0
Hund24283 Selenicereus undatus HOM05D006938 ORTHO05D008600 1.7e-42 176.0 99 84.8
SGA_v2.0_scaffold25G10864 Striga asiatica HOM05D006938 ORTHO05D008600 1.7e-42 176.0 103 81.6
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.2e-42 175.6 102 83.3
ECA246G5327 Erigeron canadensis HOM05D006938 ORTHO05D008600 2.2e-42 175.6 100 87.0
Lalb_Chr03g0035761 Lupinus albus HOM05D006938 ORTHO05D008600 2.8e-42 175.3 104 79.8
MD16G1000600 Malus domestica HOM05D006938 ORTHO05D008600 2.8e-42 175.3 103 80.6
Manes.10G035800 Manihot esculenta HOM05D006938 ORTHO05D008600 2.8e-42 175.3 105 81.0
Potri.005G199000 Populus trichocarpa HOM05D006938 ORTHO05D008600 2.8e-42 175.3 104 79.8
Hma1.2p1_0232F.1_g097690 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 3.7e-42 174.9 100 84.0
TWI53G1636 Tripterygium wilfordii HOM05D006938 ORTHO05D008600 4.8e-42 174.5 104 79.8
arahy.Tifrunner.gnm1.ann1.ZPRB1V Arachis hypogaea HOM05D006938 ORTHO05D008600 6.3e-42 174.1 101 82.2
CSS0018133 Camellia sinensis var. sinensis HOM05D006938 ORTHO05D008600 6.3e-42 174.1 100 83.0
PSO478G3769 Papaver somniferum HOM05D006938 ORTHO05D008600 6.3e-42 174.1 102 82.4
Cc07_g19080 Coffea canephora HOM05D006938 ORTHO05D008600 8.3e-42 173.7 102 81.4
PSO017G4971 Papaver somniferum HOM05D006938 ORTHO05D008600 8.3e-42 173.7 102 82.4
CAN.G157.8 Capsicum annuum HOM05D006938 ORTHO05D008600 1.1e-41 173.3 99 83.8
HanXRQChr17g0540771 Helianthus annuus HOM05D006938 ORTHO05D008600 1.8e-41 172.6 100 83.0
Sed0026401 Sechium edule HOM05D006938 ORTHO05D008600 1.8e-41 172.6 105 78.1
MBI06_g36504_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 2.4e-41 172.2 102 80.4
vmacro22268 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 3.1e-41 171.8 102 81.4
vmacro22787 Vaccinium macrocarpon HOM05D006938 ORTHO05D008600 3.1e-41 171.8 102 81.4
PGSC0003DMG400019837 Solanum tuberosum HOM05D006938 ORTHO05D008600 4.1e-41 171.4 99 81.8
Peaxi162Scf00363g00087 Petunia axillaris HOM05D006938 ORTHO05D008600 5.4e-41 171.0 99 81.8
Atru.chr11.1233 Acer truncatum HOM05D006938 ORTHO05D008600 7.0e-41 170.6 105 75.2
Atru.chr11.1321 Acer truncatum HOM05D006938 ORTHO05D008600 7.0e-41 170.6 105 75.2
Cpa.g.sc51.44 Carica papaya HOM05D006938 ORTHO05D008600 7.0e-41 170.6 104 76.9
Nitab4.5_0002392g0050 Nicotiana tabacum HOM05D006938 ORTHO05D008600 7.0e-41 170.6 99 82.8
Rhsim06G0126000 Rhododendron simsii HOM05D006938 ORTHO05D008600 7.0e-41 170.6 102 80.4
AUR62017669 Chenopodium quinoa HOM05D006938 ORTHO05D008600 1.2e-40 169.9 100 80.0
Nn4g24932 Nelumbo nucifera HOM05D006938 ORTHO05D008600 1.2e-40 169.9 102 79.4
Oeu024662.1 Olea europaea HOM05D006938 ORTHO05D008600 1.2e-40 169.9 100 81.0
Thecc.03G060300 Theobroma cacao HOM05D006938 ORTHO05D008600 1.2e-40 169.9 104 77.9
Ah.01g012920 Amaranthus hybridus HOM05D006938 ORTHO05D008600 1.6e-40 169.5 99 80.8
Duzib084G0622 Durio zibethinus HOM05D006938 ORTHO05D008600 1.6e-40 169.5 104 78.8
Gohir.A11G002500 Gossypium hirsutum HOM05D006938 ORTHO05D008600 1.6e-40 169.5 104 77.9
Gorai.007G003100 Gossypium raimondii HOM05D006938 ORTHO05D008600 1.6e-40 169.5 104 77.9
AUR62015206 Chenopodium quinoa HOM05D006938 ORTHO05D008600 2.0e-40 169.1 100 79.0
Nitab4.5_0000139g0080 Nicotiana tabacum HOM05D006938 ORTHO05D008600 2.0e-40 169.1 99 81.8
Hma1.2p1_0499F.1_g166850 Hydrangea macrophylla HOM05D006938 ORTHO05D008600 2.7e-40 168.7 98 82.7
Sc20g0002200 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.7e-40 168.7 101 79.2
Solyc02g021000.3 Solanum lycopersicum HOM05D006938 ORTHO05D008600 2.7e-40 168.7 99 81.8
Sopen02g005300 Solanum pennellii HOM05D006938 ORTHO05D008600 2.7e-40 168.7 99 81.8
Gohir.D11G002100 Gossypium hirsutum HOM05D006938 ORTHO05D008600 4.5e-40 167.9 104 76.9
Lsat_1_v5_gn_3_33800 Lactuca sativa HOM05D006938 ORTHO05D008600 5.9e-40 167.5 100 83.0
SGA_v2.0_scaffold467G52037 Striga asiatica HOM05D006938 ORTHO05D008600 5.9e-40 167.5 102 77.5
Ciclev10032755m.g Citrus clementina HOM05D006938 ORTHO05D008600 7.7e-40 167.2 109 74.3
THA.LOC104805738 Tarenaya hassleriana HOM05D006938 ORTHO05D008600 1.7e-39 166.0 101 78.2
Oeu022179.1 Olea europaea HOM05D006938 ORTHO05D008600 2.3e-39 165.6 100 80.0
AL7G45100 Arabidopsis lyrata HOM05D006938 ORTHO05D008600 5.0e-39 164.5 102 77.5
AT5G36120 Arabidopsis thaliana HOM05D006938 ORTHO05D008600 1.1e-38 163.3 102 76.5
BcaC08g44319 Brassica carinata HOM05D006938 ORTHO05D008600 1.1e-38 163.3 102 76.5
A05p16420 Brassica napus HOM05D006938 ORTHO05D008600 1.1e-38 163.3 102 76.5
C06p17420 Brassica napus HOM05D006938 ORTHO05D008600 1.1e-38 163.3 102 76.5
BolC6t36937H Brassica oleracea HOM05D006938 ORTHO05D008600 1.1e-38 163.3 102 76.5
BraA05t20549Z Brassica rapa HOM05D006938 ORTHO05D008600 1.1e-38 163.3 106 73.6
BcaB02g08043 Brassica carinata HOM05D006938 ORTHO05D008600 1.5e-38 162.9 102 76.5
Thhalv10005006m.g Eutrema salsugineum HOM05D006938 ORTHO05D008600 1.9e-38 162.5 105 74.3
Migut.I00065 Erythranthe guttata HOM05D006938 ORTHO05D008600 3.3e-38 161.8 101 75.2
Sp7g06080 Schrenkiella parvula HOM05D006938 ORTHO05D008600 3.3e-38 161.8 102 75.5
Aa31LG9G17890 Aethionema arabicum HOM05D006938 ORTHO05D008600 1.2e-37 159.8 102 74.5
Carub.0007s3179 Capsella rubella HOM05D006938 ORTHO05D008600 2.1e-37 159.1 101 74.3
HPP92_002496 Vanilla planifolia HOM05D006938 ORTHO05D008600 2.1e-37 159.1 102 72.5
HPP92_002538 Vanilla planifolia HOM05D006938 ORTHO05D008600 2.1e-37 159.1 102 72.5
Sc10g0007070 Simmondsia chinensis HOM05D006938 ORTHO05D008600 2.8e-37 158.7 101 76.2
Manes.07G111600 Manihot esculenta HOM05D006938 ORTHO05D008600 1.0e-36 156.8 105 75.2
Os01g0966200 Oryza sativa ssp. japonica HOM05D006938 ORTHO05D008600 5.2e-36 154.5 109 67.9
Zm00001eb362370 Zea mays HOM05D006938 ORTHO05D008600 1.3e-34 149.8 104 68.3
Mapoly0101s0070 Marchantia polymorpha HOM05D006938 ORTHO05D008600 4.9e-34 147.9 101 70.3
Pp3c10_19880 Physcomitrium patens HOM05D006938 ORTHO05D008600 1.8e-33 146.0 102 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2773 Anthoceros agrestis HOM05D006938 ORTHO05D008600 2.3e-31 139.0 100 66.0
SEGI_34816 Sequoiadendron giganteum HOM05D006938 ORTHO05D008600 5.0e-31 137.9 101 62.4
CDE07G1356 Ceratophyllum demersum HOM05D002851 ORTHO05D003084 2.6e-27 125.6 81 72.8
MCO16G496 Micromonas commoda HOM05D006938 ORTHO05D008600 2.6e-27 125.6 98 57.1
unitig_21.g20451 Utricularia gibba HOM05D006938 ORTHO05D008600 1.7e-26 122.9 70 81.4
MBI06_g34033_MAGBIO Magnolia biondii HOM05D006938 ORTHO05D008600 3.7e-26 121.7 74 78.4
Peaxi162Scf00818g00021 Petunia axillaris HOM05D006938 ORTHO05D008600 1.5e-22 109.8 63 81.0
Cre01.g052400 Chlamydomonas reinhardtii HOM05D006938 ORTHO05D008600 5.2e-20 101.3 104 47.1
CsaV3_4G025230 Cucumis sativus L. HOM05D006938 ORTHO05D008600 9.2e-17 90.5 59 72.9
CDE06G1837 Ceratophyllum demersum HOM05D006938 ORTHO05D008600 1.6e-16 89.7 55 76.4
PRCOL_00002779 Prasinoderma coloniale HOM05D006938 ORTHO05D008600 6.0e-16 87.8 77 54.5
EL10Ac9g22924 Beta vulgaris HOM05D006938 ORTHO05D008600 2.3e-15 85.9 44 86.4
Migut.I00066 Erythranthe guttata HOM05D006938 ORTHO05D008600 1.3e-10 70.1 44 68.2
Sc10g0007050 Simmondsia chinensis HOM05D006938 ORTHO05D008600 1.1e-09 67.0 43 65.1


User provided reference genes

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