Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0174051 Rosa chinensis HOM05D004726 ORTHO05D005986 4.1e-89 331.3 154 100.0
FvH4_6g52410 Fragaria vesca HOM05D004726 ORTHO05D005986 3.1e-36 155.6 145 55.2
FAN14G5799 Fragaria x ananassa HOM05D004726 ORTHO05D005986 3.1e-36 155.6 145 55.2
FAN05G3820 Fragaria x ananassa HOM05D004726 ORTHO05D005986 5.2e-36 154.8 145 55.2
RcHm_v2.0_Chr2g0174041 Rosa chinensis HOM05D004726 ORTHO05D005986 2.0e-35 152.9 145 54.5
FAN02G2743 Fragaria x ananassa HOM05D004726 ORTHO05D005986 3.4e-35 152.1 145 54.5
Prupe.3G298800 Prunus persica HOM05D004726 ORTHO05D005986 1.3e-34 150.2 169 46.7
Lju41A46T85 Lonicera japonica HOM05D004726 ORTHO05D005986 2.9e-34 149.1 169 47.3
Oeu033801.1 Olea europaea HOM05D004726 ORTHO05D005986 2.9e-34 149.1 171 44.4
vmacro05911 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 6.4e-34 147.9 169 45.0
vmacro05915 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 6.4e-34 147.9 169 45.0
MD09G1018400 Malus domestica HOM05D004726 ORTHO05D005986 8.4e-34 147.5 145 53.1
DCAR_002964 Daucus carota HOM05D004726 ORTHO05D005986 1.1e-33 147.1 169 46.7
Dinv33391 Davidia involucrata HOM05D004726 ORTHO05D005986 1.1e-33 147.1 169 46.7
Potri.001G336400 Populus trichocarpa HOM05D004726 ORTHO05D005986 1.4e-33 146.7 169 45.6
Ciclev10014283m.g Citrus clementina HOM05D004726 ORTHO05D005986 1.9e-33 146.4 145 51.7
Haze_14803 Corylus avellana HOM05D004726 ORTHO05D005986 1.9e-33 146.4 167 47.3
Nn3g16582 Nelumbo nucifera HOM05D004726 ORTHO05D005986 1.9e-33 146.4 145 51.7
Ah.12g055330 Amaranthus hybridus HOM05D004726 ORTHO05D005986 2.4e-33 146.0 145 50.3
MD17G1018800 Malus domestica HOM05D004726 ORTHO05D005986 2.4e-33 146.0 169 45.6
Actinidia36156 Actinidia chinensis HOM05D004726 ORTHO05D005986 3.2e-33 145.6 145 51.0
AUR62018238 Chenopodium quinoa HOM05D004726 ORTHO05D005986 3.2e-33 145.6 169 43.8
Rhsim05G0094900 Rhododendron simsii HOM05D004726 ORTHO05D005986 3.2e-33 145.6 169 44.4
Cfa007289 Carpinus fangiana HOM05D004726 ORTHO05D005986 4.1e-33 145.2 169 46.2
CiPaw.03G049600 Carya illinoinensis HOM05D004726 ORTHO05D005986 4.1e-33 145.2 169 46.7
QL02p073257 Quercus lobata HOM05D004726 ORTHO05D005986 4.1e-33 145.2 169 46.2
Sabra16G0217200 Salix brachista HOM05D004726 ORTHO05D005986 5.4e-33 144.8 145 51.0
CsaV3_3G027570 Cucumis sativus L. HOM05D004726 ORTHO05D005986 7.1e-33 144.4 169 46.7
Duzib187G0212 Durio zibethinus HOM05D004726 ORTHO05D005986 7.1e-33 144.4 169 46.2
HanXRQChr14g0451431 Helianthus annuus HOM05D004726 ORTHO05D005986 7.1e-33 144.4 145 51.0
GSVIVG01003968001 Vitis vinifera HOM05D004726 ORTHO05D005986 7.1e-33 144.4 166 45.2
Aqoxy5G03586 Aquilegia oxysepala HOM05D004726 ORTHO05D005986 1.2e-32 143.7 145 51.0
COL.COLO4_29260 Corchorus olitorius HOM05D004726 ORTHO05D005986 1.2e-32 143.7 169 45.6
PSO017G0372 Papaver somniferum HOM05D004726 ORTHO05D005986 1.2e-32 143.7 169 45.6
PSO017G1160 Papaver somniferum HOM05D004726 ORTHO05D005986 1.2e-32 143.7 169 45.6
Duzib147G0777 Durio zibethinus HOM05D004726 ORTHO05D005986 1.6e-32 143.3 167 47.3
Peaxi162Scf00205g00121 Petunia axillaris HOM05D004726 ORTHO05D005986 1.6e-32 143.3 145 50.3
arahy.Tifrunner.gnm1.ann1.Q8ZL0R Arachis hypogaea HOM05D004726 ORTHO05D005986 2.1e-32 142.9 169 45.6
Gohir.D09G032300 Gossypium hirsutum HOM05D004726 ORTHO05D005986 2.1e-32 142.9 151 49.0
Gorai.006G037200 Gossypium raimondii HOM05D004726 ORTHO05D005986 2.1e-32 142.9 151 49.0
Lsat_1_v5_gn_2_93500 Lactuca sativa HOM05D004726 ORTHO05D005986 2.1e-32 142.9 148 50.7
arahy.Tifrunner.gnm1.ann1.2353RE Arachis hypogaea HOM05D004726 ORTHO05D005986 2.7e-32 142.5 169 45.0
PSO478G3762 Papaver somniferum HOM05D004726 ORTHO05D005986 2.7e-32 142.5 169 45.0
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 3.5e-32 142.1 145 52.4
Oeu048592.1 Olea europaea HOM05D004726 ORTHO05D005986 3.5e-32 142.1 169 43.2
Cc07_g00350 Coffea canephora HOM05D004726 ORTHO05D005986 4.6e-32 141.7 145 50.3
Nn4g22464 Nelumbo nucifera HOM05D004726 ORTHO05D005986 4.6e-32 141.7 169 44.4
Atru.chr3.1245 Acer truncatum HOM05D004726 ORTHO05D005986 6.0e-32 141.4 151 49.0
AUR62037765 Chenopodium quinoa HOM05D004726 ORTHO05D005986 6.0e-32 141.4 145 49.0
MELO3C014786.2 Cucumis melo HOM05D004726 ORTHO05D005986 6.0e-32 141.4 169 46.2
Gohir.A09G032200 Gossypium hirsutum HOM05D004726 ORTHO05D005986 6.0e-32 141.4 151 48.3
Thecc.04G026000 Theobroma cacao HOM05D004726 ORTHO05D005986 7.8e-32 141.0 169 45.6
CSS0005841 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 1.3e-31 140.2 145 49.7
CSS0026983 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 1.3e-31 140.2 145 49.7
SalBow2G0243 Salvia bowleyana HOM05D004726 ORTHO05D005986 1.3e-31 140.2 169 43.2
Solyc05g008260.3 Solanum lycopersicum HOM05D004726 ORTHO05D005986 1.3e-31 140.2 169 44.4
Sopen05g004100 Solanum pennellii HOM05D004726 ORTHO05D005986 1.3e-31 140.2 169 44.4
ClCG05G012910 Citrullus lanatus HOM05D004726 ORTHO05D005986 1.7e-31 139.8 169 45.6
Lalb_Chr21g0317631 Lupinus albus HOM05D004726 ORTHO05D005986 1.7e-31 139.8 169 44.4
PGR083G2241 Punica granatum HOM05D004726 ORTHO05D005986 1.7e-31 139.8 145 49.7
TWI56G1181 Tripterygium wilfordii HOM05D004726 ORTHO05D005986 1.7e-31 139.8 145 50.3
SHI03847 Sapria himalayana HOM05D004726 ORTHO05D005986 2.3e-31 139.4 145 49.0
Sc07g0004390 Simmondsia chinensis HOM05D004726 ORTHO05D005986 2.3e-31 139.4 169 42.6
SGA_v2.0_scaffold135G34934 Striga asiatica HOM05D004726 ORTHO05D005986 2.3e-31 139.4 169 43.2
Lj2g0016129 Lotus japonicus HOM05D004726 ORTHO05D005986 3.0e-31 139.0 169 43.8
PSO386G0103 Papaver somniferum HOM05D004726 ORTHO05D005986 3.0e-31 139.0 169 43.8
Sed0019499 Sechium edule HOM05D004726 ORTHO05D005986 3.0e-31 139.0 169 45.0
PGSC0003DMG400030549 Solanum tuberosum HOM05D004726 ORTHO05D005986 3.9e-31 138.7 145 49.0
Aa31LG5G10860 Aethionema arabicum HOM05D004726 ORTHO05D005986 5.1e-31 138.3 145 49.7
AL3G10420 Arabidopsis lyrata HOM05D004726 ORTHO05D005986 5.1e-31 138.3 145 48.3
Cpa.g.sc130.48 Carica papaya HOM05D004726 ORTHO05D005986 5.1e-31 138.3 145 49.0
Ah.11g044820 Amaranthus hybridus HOM05D004726 ORTHO05D005986 6.6e-31 137.9 145 47.6
Thhalv10020079m.g Eutrema salsugineum HOM05D004726 ORTHO05D005986 6.6e-31 137.9 145 48.3
VMungo0464G1053 Vigna mungo HOM05D004726 ORTHO05D005986 8.6e-31 137.5 169 43.8
A03p32390 Brassica napus HOM05D004726 ORTHO05D005986 1.1e-30 137.1 145 47.6
BraA03t12409Z Brassica rapa HOM05D004726 ORTHO05D005986 1.1e-30 137.1 145 47.6
Lalb_Chr22g0360561 Lupinus albus HOM05D004726 ORTHO05D005986 1.1e-30 137.1 169 42.6
Manes.17G107900 Manihot esculenta HOM05D004726 ORTHO05D005986 1.1e-30 137.1 169 45.0
Phvul.004G058000 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 1.5e-30 136.7 169 43.8
Hund13042 Selenicereus undatus HOM05D004726 ORTHO05D005986 1.5e-30 136.7 145 46.9
THA.LOC104821108 Tarenaya hassleriana HOM05D004726 ORTHO05D005986 1.5e-30 136.7 145 49.0
Migut.G00516 Erythranthe guttata HOM05D004726 ORTHO05D005986 1.9e-30 136.3 145 49.0
AT3G01720 Arabidopsis thaliana HOM05D004726 ORTHO05D005986 2.5e-30 136.0 145 46.2
BcaC01g04537 Brassica carinata HOM05D004726 ORTHO05D005986 2.5e-30 136.0 145 46.9
Eucgr.J02276 Eucalyptus grandis HOM05D004726 ORTHO05D005986 3.3e-30 135.6 145 47.6
C03p39450 Brassica napus HOM05D004726 ORTHO05D005986 4.3e-30 135.2 145 46.9
BolC3t16213H Brassica oleracea HOM05D004726 ORTHO05D005986 4.3e-30 135.2 145 46.9
Glyma.19G055500 Glycine max HOM05D004726 ORTHO05D005986 4.3e-30 135.2 169 42.6
Medtr0044s0180 Medicago truncatula HOM05D004726 ORTHO05D005986 4.3e-30 135.2 169 43.8
TPR.G9063 Trifolium pratense HOM05D004726 ORTHO05D005986 4.3e-30 135.2 145 49.0
Carub.0003s0033 Capsella rubella HOM05D004726 ORTHO05D005986 5.6e-30 134.8 145 46.9
Glyma.05G072300 Glycine max HOM05D004726 ORTHO05D005986 7.3e-30 134.4 169 42.6
Glyma.16G063900 Glycine max HOM05D004726 ORTHO05D005986 7.3e-30 134.4 145 49.0
Lj1g0014024 Lotus japonicus HOM05D004726 ORTHO05D005986 7.3e-30 134.4 145 47.6
Sed0012188 Sechium edule HOM05D004726 ORTHO05D005986 9.6e-30 134.0 169 43.2
Ca_03877_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 1.2e-29 133.7 145 49.0
CANSAT64G1163 Cannabis sativa HOM05D004726 ORTHO05D005986 1.6e-29 133.3 145 46.9
Sp3g00330 Schrenkiella parvula HOM05D004726 ORTHO05D005986 1.6e-29 133.3 145 48.3
EL10Ac2g03214 Beta vulgaris HOM05D004726 ORTHO05D005986 2.1e-29 132.9 145 46.2
Ca_04399_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 3.6e-29 132.1 145 46.9
Nitab4.5_0004776g0030 Nicotiana tabacum HOM05D004726 ORTHO05D005986 4.7e-29 131.7 151 45.7
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 6.2e-29 131.3 144 47.9
Phvul.008G146800 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 6.2e-29 131.3 145 48.3
Psat0s1369g0120 Pisum sativum HOM05D004726 ORTHO05D005986 1.1e-28 130.6 145 49.0
HPP92_015461 Vanilla planifolia HOM05D004726 ORTHO05D005986 1.1e-28 130.6 144 46.5
VMungo1383G2700 Vigna mungo HOM05D004726 ORTHO05D005986 1.4e-28 130.2 145 49.0
TPR.G7511 Trifolium pratense HOM05D004726 ORTHO05D005986 3.1e-28 129.0 145 44.1
Oeu050441.1 Olea europaea HOM05D004726 ORTHO05D005986 5.2e-28 128.3 159 45.9
Os01g0904500 Oryza sativa ssp. japonica HOM05D004726 ORTHO05D005986 5.2e-28 128.3 148 43.9
Medtr6g022320 Medicago truncatula HOM05D004726 ORTHO05D005986 6.8e-28 127.9 145 44.1
Psat1g083400 Pisum sativum HOM05D004726 ORTHO05D005986 2.0e-27 126.3 145 44.8
SMO117G0207 Selaginella moellendorffii HOM05D004726 ORTHO05D005986 4.4e-27 125.2 148 43.2
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 1.7e-26 123.2 141 43.3
AagrBONN_evm.TU.Sc2ySwM_344.876 Anthoceros agrestis HOM05D004726 ORTHO05D005986 6.0e-24 114.8 170 37.6
Pp3c10_20040 Physcomitrium patens HOM05D004726 ORTHO05D005986 1.5e-22 110.2 143 39.2
Mapoly0014s0026 Marchantia polymorpha HOM05D004726 ORTHO05D005986 4.3e-22 108.6 175 34.9
TAR374G1052 Trochodendron aralioides HOM05D004726 ORTHO05D005986 1.4e-20 103.6 83 57.8
VMungo1383G3734 Vigna mungo HOM05D004726 ORTHO05D005986 1.1e-17 94.0 149 36.2
Zm00001eb344270 Zea mays HOM05D004726 ORTHO05D005986 4.2e-17 92.0 57 66.7
Zm00001eb128230 Zea mays HOM05D004726 ORTHO05D005986 1.6e-16 90.1 57 64.9
Atru.BG.103.p Acer truncatum HOM05D004726 ORTHO05D005986 2.1e-16 89.7 149 34.9
Atru.chr3.2443 Acer truncatum HOM05D004726 ORTHO05D005986 2.1e-16 89.7 149 34.9
CBR_g52139 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-16 89.7 142 33.1
Zm00001eb311070 Zea mays HOM05D004726 ORTHO05D005986 3.5e-16 89.0 53 67.9
CARHR075200 Cardamine hirsuta HOM05D004726 ORTHO05D005986 4.6e-16 88.6 150 32.7
Zm00001eb389090 Zea mays HOM05D004726 ORTHO05D005986 1.3e-15 87.0 49 67.3
TAR622G0871 Trochodendron aralioides HOM05D004726 ORTHO05D005986 4.3e-14 82.0 141 34.8
Pp3c3_33250 Physcomitrium patens HOM05D004726 ORTHO05D005986 1.6e-13 80.1 57 59.6
Oeu054664.1 Olea europaea HOM05D004726 ORTHO05D005986 8.1e-13 77.8 145 30.3
Gorai.001G267700 Gossypium raimondii HOM05D004726 ORTHO05D005986 1.7e-10 70.1 116 40.5
MD04G1153000 Malus domestica HOM05D004726 ORTHO05D005986 2.9e-10 69.3 108 38.9
Gohir.D07G232450 Gossypium hirsutum HOM05D004726 ORTHO05D005986 3.8e-10 68.9 116 38.8


User provided reference genes

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