Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0168431 Rosa chinensis HOM05D000113 ORTHO05D014811 4.1e-107 391.3 192 100.0
RcHm_v2.0_Chr7g0220171 Rosa chinensis HOM05D000113 ORTHO05D006161 2.2e-52 209.5 179 63.1
Prupe.1G193500 Prunus persica HOM05D000113 ORTHO05D006161 1.2e-50 203.8 186 63.4
Prupe.1G445700 Prunus persica HOM05D000113 ORTHO05D006161 2.0e-48 196.4 178 60.7
RcHm_v2.0_Chr4g0407811 Rosa chinensis HOM05D000113 ORTHO05D006161 1.1e-46 190.7 186 60.2
MD04G1241500 Malus domestica HOM05D000113 ORTHO05D006161 2.4e-46 189.5 179 58.7
FvH4_3g40090 Fragaria vesca HOM05D000113 ORTHO05D006161 5.9e-45 184.9 179 59.2
FAN11G2310 Fragaria x ananassa HOM05D000113 ORTHO05D006161 7.7e-45 184.5 179 59.2
FAN16G3510 Fragaria x ananassa HOM05D000113 ORTHO05D006161 7.7e-45 184.5 179 59.2
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 2.7e-42 176.0 187 55.1
COL.COLO4_23301 Corchorus olitorius HOM05D000113 ORTHO05D006161 6.1e-42 174.9 174 54.0
Duzib138G1872 Durio zibethinus HOM05D000113 ORTHO05D006161 1.4e-41 173.7 174 54.6
SalBow6G1114 Salvia bowleyana HOM05D000113 ORTHO05D006161 3.0e-41 172.6 174 53.4
vmacro04631 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 3.0e-41 172.6 186 53.2
TAR633G2709 Trochodendron aralioides HOM05D000113 ORTHO05D006161 5.2e-41 171.8 186 52.2
Thecc.01G306300 Theobroma cacao HOM05D000113 ORTHO05D006161 8.8e-41 171.0 174 53.4
Oeu008340.1 Olea europaea HOM05D000113 ORTHO05D006161 1.1e-40 170.6 185 53.5
Atru.chr5.1086 Acer truncatum HOM05D000113 ORTHO05D006161 1.5e-40 170.2 191 51.3
Actinidia25823 Actinidia chinensis HOM05D000113 ORTHO05D006161 1.5e-40 170.2 183 54.1
Cfa005867 Carpinus fangiana HOM05D000113 ORTHO05D006161 1.5e-40 170.2 187 53.5
Gohir.D07G130400 Gossypium hirsutum HOM05D000113 ORTHO05D006161 2.6e-40 169.5 192 50.0
Thecc.10G083300 Theobroma cacao HOM05D000113 ORTHO05D006161 4.4e-40 168.7 174 52.9
Gorai.001G141100 Gossypium raimondii HOM05D000113 ORTHO05D006161 5.7e-40 168.3 192 50.0
Lj5A370T56 Lonicera japonica HOM05D000113 ORTHO05D006161 5.7e-40 168.3 186 53.2
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 7.4e-40 167.9 186 53.2
CSS0016737 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 1.3e-39 167.2 183 53.6
TAR362G0332 Trochodendron aralioides HOM05D000113 ORTHO05D006161 1.3e-39 167.2 186 51.6
Dinv42093 Davidia involucrata HOM05D000113 ORTHO05D006161 1.7e-39 166.8 185 52.4
Nn5g26851 Nelumbo nucifera HOM05D000113 ORTHO05D006161 1.7e-39 166.8 209 46.9
Potri.002G201400 Populus trichocarpa HOM05D000113 ORTHO05D006161 2.2e-39 166.4 186 52.2
Cpa.g.sc151.33 Carica papaya HOM05D000113 ORTHO05D006161 1.1e-38 164.1 180 52.8
SGA_v2.0_scaffold334G49027 Striga asiatica HOM05D000113 ORTHO05D006161 1.1e-38 164.1 183 51.4
Gohir.A07G126300 Gossypium hirsutum HOM05D000113 ORTHO05D006161 1.8e-38 163.3 192 48.4
Hma1.2p1_0212F.1_g090260 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 1.8e-38 163.3 184 51.1
QL12p027746 Quercus lobata HOM05D000113 ORTHO05D006161 1.8e-38 163.3 187 52.9
Eucgr.E04059 Eucalyptus grandis HOM05D000113 ORTHO05D006161 2.4e-38 162.9 186 53.8
Sc15g0001890 Simmondsia chinensis HOM05D000113 ORTHO05D006161 2.4e-38 162.9 184 52.2
Sc26g0003690 Simmondsia chinensis HOM05D000113 ORTHO05D006161 2.4e-38 162.9 184 51.1
THA.LOC104802184 Tarenaya hassleriana HOM05D000113 ORTHO05D006161 4.1e-38 162.2 168 48.8
CiPaw.07G112500 Carya illinoinensis HOM05D000113 ORTHO05D006161 5.3e-38 161.8 180 52.8
CANSAT80G0530 Cannabis sativa HOM05D000113 ORTHO05D006161 7.0e-38 161.4 186 49.5
MSTRG.21654 Avicennia marina HOM05D000113 ORTHO05D006161 1.2e-37 160.6 174 49.4
Ciclev10018519m.g Citrus clementina HOM05D000113 ORTHO05D006161 1.2e-37 160.6 186 52.2
Rhsim01G0287700 Rhododendron simsii HOM05D000113 ORTHO05D006161 1.2e-37 160.6 186 51.1
Sed0026170 Sechium edule HOM05D000113 ORTHO05D006161 1.2e-37 160.6 170 52.4
TWI59G0818 Tripterygium wilfordii HOM05D000113 ORTHO05D006161 1.6e-37 160.2 179 52.0
Sopen01g039450 Solanum pennellii HOM05D000113 ORTHO05D006161 2.0e-37 159.8 177 50.8
Manes.01G223000 Manihot esculenta HOM05D000113 ORTHO05D006161 2.6e-37 159.5 186 51.1
arahy.Tifrunner.gnm1.ann1.M111ST Arachis hypogaea HOM05D000113 ORTHO05D006161 4.5e-37 158.7 178 50.6
PSO675G6280 Papaver somniferum HOM05D000113 ORTHO05D006161 4.5e-37 158.7 187 49.7
arahy.Tifrunner.gnm1.ann1.SIBB7F Arachis hypogaea HOM05D000113 ORTHO05D006161 5.9e-37 158.3 178 50.6
CSS0034422 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 5.9e-37 158.3 183 50.8
FAN09G2121 Fragaria x ananassa HOM05D016056 ORTHO05D014811 1.3e-36 157.1 102 78.4
FAN09G2219 Fragaria x ananassa HOM05D016056 ORTHO05D014811 1.3e-36 157.1 102 78.4
CDE07G0864 Ceratophyllum demersum HOM05D000113 ORTHO05D006161 1.7e-36 156.8 185 47.6
CAN.G986.23 Capsicum annuum HOM05D000113 ORTHO05D006161 2.9e-36 156.0 176 50.6
unitig_22.g5234 Utricularia gibba HOM05D000113 ORTHO05D006161 2.9e-36 156.0 186 48.9
ClCG09G005490 Citrullus lanatus HOM05D000113 ORTHO05D006161 3.8e-36 155.6 178 48.3
Lj2g0016628 Lotus japonicus HOM05D000113 ORTHO05D006161 3.8e-36 155.6 186 48.4
Lj4g0011992 Lotus japonicus HOM05D000113 ORTHO05D006161 3.8e-36 155.6 186 48.4
Solyc01g095710.3 Solanum lycopersicum HOM05D000113 ORTHO05D006161 3.8e-36 155.6 177 50.3
MELO3C015960.2 Cucumis melo HOM05D000113 ORTHO05D006161 5.0e-36 155.2 178 48.9
FAN21G3024 Fragaria x ananassa HOM05D000113 ORTHO05D006161 5.0e-36 155.2 180 52.2
Ca_15122_v3 Cicer arietinum L. HOM05D000113 ORTHO05D006161 6.5e-36 154.8 178 49.4
Aa31LG1G28830 Aethionema arabicum HOM05D000113 ORTHO05D006161 2.5e-35 152.9 158 49.4
AT1G33390 Arabidopsis thaliana HOM05D000113 ORTHO05D006161 2.5e-35 152.9 162 49.4
Cc08_g12990 Coffea canephora HOM05D000113 ORTHO05D006161 2.5e-35 152.9 187 48.1
Glyma.01G142700 Glycine max HOM05D000113 ORTHO05D006161 3.2e-35 152.5 180 49.4
Nitab4.5_0004367g0140 Nicotiana tabacum HOM05D000113 ORTHO05D006161 3.2e-35 152.5 174 48.3
PSO339G3312 Papaver somniferum HOM05D000113 ORTHO05D006161 4.2e-35 152.1 187 49.2
CsaV3_7G029610 Cucumis sativus L. HOM05D000113 ORTHO05D006161 5.5e-35 151.8 178 48.9
AL1G47770 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 7.2e-35 151.4 171 47.4
Lalb_Chr10g0099391 Lupinus albus HOM05D000113 ORTHO05D006161 7.2e-35 151.4 176 48.9
Psat7g233480 Pisum sativum HOM05D000113 ORTHO05D006161 7.2e-35 151.4 178 49.4
PGSC0003DMG401000100 Solanum tuberosum HOM05D000113 ORTHO05D006161 7.2e-35 151.4 177 48.6
AL8G14950 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 9.4e-35 151.0 171 46.8
Phvul.010G084200 Phaseolus vulgaris HOM05D000113 ORTHO05D006161 1.6e-34 150.2 179 47.5
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 2.1e-34 149.8 174 50.6
CARHR032810 Cardamine hirsuta HOM05D000113 ORTHO05D006161 2.7e-34 149.4 163 47.9
AUR62008717 Chenopodium quinoa HOM05D000113 ORTHO05D006161 2.7e-34 149.4 174 50.6
DCAR_018927 Daucus carota HOM05D000310 ORTHO05D006161 2.7e-34 149.4 182 51.1
HanXRQChr04g0105431 Helianthus annuus HOM05D000113 ORTHO05D006161 3.6e-34 149.1 172 50.0
Medtr4g023590 Medicago truncatula HOM05D000113 ORTHO05D006161 3.6e-34 149.1 170 47.6
EL10Ac6g14998 Beta vulgaris HOM05D000113 ORTHO05D006161 4.7e-34 148.7 184 47.3
Migut.D00126 Erythranthe guttata HOM05D000113 ORTHO05D006161 4.7e-34 148.7 177 49.2
Medtr4g120070 Medicago truncatula HOM05D000113 ORTHO05D006161 4.7e-34 148.7 169 47.9
Os02g0736600 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D006161 4.7e-34 148.7 164 48.8
Sp7g11220 Schrenkiella parvula HOM05D000113 ORTHO05D006161 4.7e-34 148.7 171 46.8
SEGI_29750 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 6.1e-34 148.3 179 46.4
Hund05453 Selenicereus undatus HOM05D000113 ORTHO05D006161 8.0e-34 147.9 186 49.5
Zm00001eb253900 Zea mays HOM05D000113 ORTHO05D006161 8.0e-34 147.9 180 43.9
DCAR_012372 Daucus carota HOM05D000113 ORTHO05D006161 1.4e-33 147.1 191 44.5
Carub.0001s3158 Capsella rubella HOM05D000113 ORTHO05D006161 2.3e-33 146.4 163 46.6
Thhalv10024243m.g Eutrema salsugineum HOM05D000113 ORTHO05D006161 2.3e-33 146.4 172 46.5
ECA248G0290 Erigeron canadensis HOM05D000113 ORTHO05D006161 3.0e-33 146.0 177 48.6
VMungo0331G1928 Vigna mungo HOM05D001793 ORTHO05D006161 3.0e-33 146.0 179 47.5
Glyma.03G024000 Glycine max HOM05D000113 ORTHO05D006161 4.0e-33 145.6 180 48.9
TPR.G9858 Trifolium pratense HOM05D000113 ORTHO05D006161 4.0e-33 145.6 178 48.3
SEGI_22008 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 6.7e-33 144.8 179 45.3
Peaxi162Scf00150g00139 Petunia axillaris HOM05D000113 ORTHO05D006161 1.2e-32 144.1 174 47.1
ATR0307G121 Amborella trichopoda HOM05D000113 ORTHO05D006161 7.5e-32 141.4 175 49.1
Lsat_1_v5_gn_3_139220 Lactuca sativa HOM05D000113 ORTHO05D006161 9.7e-32 141.0 182 45.1
TPR.G23919 Trifolium pratense HOM05D000113 ORTHO05D006161 2.8e-31 139.4 157 47.1
BcaB07g30168 Brassica carinata HOM05D000113 ORTHO05D006161 2.4e-30 136.3 171 44.4
SHI19097 Sapria himalayana HOM05D000113 ORTHO05D006161 3.8e-28 129.0 172 45.3
BraA02t08535Z Brassica rapa HOM05D000113 ORTHO05D006161 1.5e-27 127.1 171 42.1
A02p35320 Brassica napus HOM05D000113 ORTHO05D006161 1.9e-27 126.7 171 42.1
BcaC03g17457 Brassica carinata HOM05D000113 ORTHO05D006161 2.5e-27 126.3 171 42.1
C02p54060 Brassica napus HOM05D000113 ORTHO05D006161 1.6e-26 123.6 171 41.5
BolC2t11468H Brassica oleracea HOM05D000113 ORTHO05D006161 1.6e-26 123.6 171 41.5
MBI04_g31155_MAGBIO Magnolia biondii HOM05D000113 ORTHO05D006161 1.4e-25 120.6 185 42.7
EL10Ac4g07792 Beta vulgaris HOM05D000113 ORTHO05D006161 3.0e-25 119.4 180 44.4
AagrBONN_evm.TU.Sc2ySwM_344.808 Anthoceros agrestis HOM05D000482 ORTHO05D000349 1.2e-24 117.5 180 38.3
FAN14G3315 Fragaria x ananassa HOM05D016056 ORTHO05D014811 1.5e-24 117.1 95 68.4
BcaC03g17455 Brassica carinata HOM05D000113 ORTHO05D006161 2.6e-24 116.3 168 41.7
FAN02G4173 Fragaria x ananassa HOM05D016056 ORTHO05D014811 2.6e-24 116.3 124 57.3
EL10Ac4g10280 Beta vulgaris HOM05D000113 ORTHO05D006161 3.4e-24 115.9 180 44.4
Pp3c3_18630 Physcomitrium patens HOM05D000113 ORTHO05D006161 3.4e-24 115.9 178 41.6
EL10Ac4g10264 Beta vulgaris HOM05D000113 ORTHO05D006161 3.7e-23 112.5 180 43.9
FvH4_6g48600 Fragaria vesca HOM05D016056 ORTHO05D014811 1.1e-22 110.9 63 87.3
Hma1.2p1_0098F.1_g048470 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 1.4e-22 110.5 146 45.2
GSVIVG01028054001 Vitis vinifera HOM05D000113 ORTHO05D006161 5.4e-22 108.6 168 42.9
FAN05G0532 Fragaria x ananassa HOM05D016056 ORTHO05D014811 9.1e-22 107.8 104 59.6
Mapoly0044s0018 Marchantia polymorpha HOM05D000113 ORTHO05D006161 1.7e-20 103.6 190 34.7
Migut.G00075 Erythranthe guttata HOM05D000113 ORTHO05D006161 5.0e-20 102.1 164 41.5
CBR_g66799 Chara braunii HOM05D000113 ORTHO05D006161 5.7e-16 88.6 186 31.7
Lj3C171T0 Lonicera japonica HOM05D000113 ORTHO05D014811 9.8e-16 87.8 116 44.8
Lj3A171T9 Lonicera japonica HOM05D000113 ORTHO05D014811 2.4e-14 83.2 130 40.0
Aqoxy2G02870 Aquilegia oxysepala HOM05D000113 ORTHO05D006161 3.1e-14 82.8 91 50.5
Hma1.2p1_0098F.1_g048420 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 4.1e-14 82.4 176 34.7
SMO367G1023 Selaginella moellendorffii HOM05D000113 ORTHO05D006161 1.2e-13 80.9 162 34.6
vmacro15135 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 1.6e-13 80.5 78 53.8
Atru.chr9.1268 Acer truncatum HOM05D000113 ORTHO05D006161 6.6e-12 75.1 95 47.4
AagrBONN_evm.TU.Sc2ySwM_344.844 Anthoceros agrestis HOM05D000113 ORTHO05D014811 1.9e-11 73.6 84 45.2
MCO05G299 Micromonas commoda HOM05D000113 ORTHO05D006161 8.0e-10 68.2 180 28.9
Lj3C173G0 Lonicera japonica HOM05D000113 ORTHO05D014811 1.2e-08 64.3 77 49.4
Haze_04980 Corylus avellana HOM05D001493 ORTHO05D006161 4.4e-08 62.4 59 59.3
Medtr3g070430 Medicago truncatula HOM05D000113 ORTHO05D006161 1.1e-06 57.8 145 29.7


User provided reference genes

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