Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 3.0e-82 308.5 162 100.0
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 1.3e-50 203.4 125 86.4
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 1.8e-50 203.0 125 85.6
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.1e-50 201.4 118 89.8
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 9.7e-49 197.2 118 86.4
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 1.8e-34 149.8 119 73.9
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 3.9e-34 148.7 115 73.9
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 6.7e-34 147.9 120 71.7
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 2.6e-30 136.0 121 62.8
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 1.9e-28 129.8 119 63.0
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 1.9e-28 129.8 119 60.5
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.6e-27 126.7 114 63.2
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 1.6e-27 126.7 94 64.9
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 2.1e-27 126.3 119 62.2
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 2.1e-27 126.3 119 59.7
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 3.6e-27 125.6 118 60.2
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 6.1e-27 124.8 118 61.9
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 8.0e-27 124.4 117 61.5
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 8.0e-27 124.4 118 58.5
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 1.8e-26 123.2 119 61.3
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 2.3e-26 122.9 120 57.5
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 4.0e-26 122.1 115 61.7
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 8.8e-26 120.9 118 59.3
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 1.1e-25 120.6 118 58.5
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 2.0e-25 119.8 90 64.4
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 2.0e-25 119.8 118 57.6
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 2.0e-25 119.8 118 57.6
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 2.6e-25 119.4 98 63.3
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 3.3e-25 119.0 100 58.0
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 4.4e-25 118.6 96 64.6
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 5.7e-25 118.2 122 57.4
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 7.5e-25 117.9 96 60.4
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 1.3e-24 117.1 96 60.4
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 2.2e-24 116.3 90 65.6
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 2.2e-24 116.3 111 56.8
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 2.8e-24 115.9 118 55.1
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 4.8e-24 115.2 101 59.4
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 8.2e-24 114.4 96 58.3
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.1e-23 114.0 97 59.8
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.1e-23 114.0 118 57.6
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 1.4e-23 113.6 101 56.4
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 1.4e-23 113.6 97 62.9
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 1.8e-23 113.2 112 54.5
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 1.8e-23 113.2 118 57.6
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 2.4e-23 112.8 96 60.4
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 2.4e-23 112.8 103 61.2
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 2.4e-23 112.8 118 57.6
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 3.1e-23 112.5 110 54.5
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 3.1e-23 112.5 96 58.3
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 4.1e-23 112.1 93 58.1
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 4.1e-23 112.1 93 58.1
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 4.1e-23 112.1 93 58.1
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 7.0e-23 111.3 108 56.5
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 9.1e-23 110.9 81 64.2
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 9.1e-23 110.9 115 51.3
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 9.1e-23 110.9 100 63.0
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 1.2e-22 110.5 115 52.2
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 1.2e-22 110.5 98 56.1
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.6e-22 110.2 97 55.7
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 1.6e-22 110.2 92 58.7
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 1.6e-22 110.2 104 60.6
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.6e-22 110.2 108 55.6
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.0e-22 109.8 97 56.7
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.0e-22 109.8 113 56.6
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 2.0e-22 109.8 87 65.5
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 2.0e-22 109.8 118 56.8
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 2.0e-22 109.8 118 55.9
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 2.7e-22 109.4 97 62.9
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 3.5e-22 109.0 100 58.0
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 4.5e-22 108.6 108 55.6
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 4.5e-22 108.6 84 64.3
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 5.9e-22 108.2 110 54.5
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 7.7e-22 107.8 72 70.8
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 7.7e-22 107.8 97 60.8
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 7.7e-22 107.8 113 50.4
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 7.7e-22 107.8 87 63.2
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 1.3e-21 107.1 100 56.0
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 1.3e-21 107.1 104 55.8
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 1.7e-21 106.7 117 49.6
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 1.7e-21 106.7 117 49.6
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 1.7e-21 106.7 111 58.6
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 2.2e-21 106.3 104 54.8
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 2.2e-21 106.3 91 57.1
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 2.2e-21 106.3 111 55.0
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 2.2e-21 106.3 92 55.4
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 3.8e-21 105.5 106 52.8
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 5.0e-21 105.1 101 59.4
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 6.5e-21 104.8 108 54.6
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 6.5e-21 104.8 106 52.8
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 6.5e-21 104.8 107 53.3
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 6.5e-21 104.8 105 57.1
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 8.5e-21 104.4 83 61.4
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 1.1e-20 104.0 101 52.5
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.5e-20 103.6 78 64.1
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.5e-20 102.8 73 68.5
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.5e-20 102.8 73 68.5
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.2e-20 102.4 94 56.4
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 4.2e-20 102.1 121 49.6
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 4.2e-20 102.1 106 51.9
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 4.2e-20 102.1 93 57.0
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 5.5e-20 101.7 78 64.1
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 5.5e-20 101.7 99 56.6
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 5.5e-20 101.7 104 50.0
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 9.4e-20 100.9 105 53.3
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 1.6e-19 100.1 114 49.1
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 2.7e-19 99.4 100 53.0
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 3.6e-19 99.0 126 49.2
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 4.7e-19 98.6 95 53.7
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 6.1e-19 98.2 105 51.4
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 1.8e-18 96.7 94 56.4
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 2.3e-18 96.3 99 54.5
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 3.0e-18 95.9 125 48.0
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 4.0e-18 95.5 116 50.0
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 4.4e-17 92.0 116 47.4
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 7.5e-17 91.3 90 51.1
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 9.8e-17 90.9 93 52.7
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 9.8e-17 90.9 98 49.0
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 3.7e-16 89.0 108 47.2
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.8e-15 86.7 71 56.3
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 1.8e-15 86.7 65 64.6
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 7.0e-15 84.7 99 46.5
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 5.9e-14 81.6 58 67.2
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 2.9e-13 79.3 62 59.7
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 1.4e-10 70.5 68 48.5
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 3.4e-09 65.9 71 43.7
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 4.9e-08 62.0 106 36.8
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.6e-06 57.0 62 59.7


User provided reference genes

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