Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 2.7e-30 134.8 73 100.0
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 8.0e-27 123.2 73 90.4
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 5.0e-21 104.0 74 81.1
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 4.2e-20 100.9 74 77.0
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 5.5e-20 100.5 75 69.3
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 3.6e-19 97.8 54 81.5
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.0e-18 96.3 73 76.7
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.0e-18 96.3 73 76.7
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 1.4e-18 95.9 73 76.7
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-18 95.9 74 77.0
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.3e-18 95.1 73 75.3
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.0e-18 94.4 73 76.7
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.9e-18 93.2 73 74.0
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.3e-16 86.7 59 74.6
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 1.1e-15 86.3 62 72.6
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 7.0e-15 83.6 59 71.2
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.0e-15 83.6 59 71.2
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 7.0e-15 83.6 82 65.9
FAN05G0132 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.2e-15 83.2 59 72.9
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 4.6e-14 80.9 74 73.0
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 7.8e-14 80.1 74 68.9
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.9e-13 77.8 60 68.3
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 8.6e-13 76.6 75 65.3
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.1e-12 76.3 76 60.5
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.1e-12 76.3 84 61.9
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 5.6e-12 73.9 54 74.1
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 5.6e-12 73.9 65 67.7
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 7.3e-12 73.6 76 67.1
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 9.5e-12 73.2 61 68.9
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.8e-11 71.6 75 68.0
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 4.7e-11 70.9 67 56.7
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 8.0e-11 70.1 72 62.5
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 8.0e-11 70.1 66 63.6
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 8.0e-11 70.1 77 64.9
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.0e-10 69.7 64 60.9
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-10 69.3 61 67.2
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-10 69.3 67 61.2
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-10 69.3 63 63.5
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.4e-10 69.3 61 67.2
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 57.5
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 57.5
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 1.8e-10 68.9 82 57.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 1.8e-10 68.9 68 63.2
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.3e-10 68.6 71 60.6
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.1e-10 68.2 73 56.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.1e-10 68.2 67 61.2
Prupe.6G185000 Prunus persica HOM05D002385 ORTHO05D002245 4.0e-10 67.8 74 62.2
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 5.2e-10 67.4 74 54.1
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.9e-10 66.6 64 62.5
FAN19G0851 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.9e-10 66.6 76 68.4
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.2e-09 66.2 64 62.5
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.2e-09 66.2 64 62.5
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.5e-09 65.9 71 54.9
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.5e-09 65.9 71 54.9
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.5e-09 65.9 74 55.4
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 2.0e-09 65.5 50 72.0
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.6e-09 65.1 72 58.3
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.6e-09 65.1 72 58.3
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 2.6e-09 65.1 64 60.9
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 56.2
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 3.4e-09 64.7 50 70.0
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.4e-09 64.3 73 57.5
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 4.4e-09 64.3 80 58.8
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.4e-09 64.3 74 51.4
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 5.8e-09 63.9 71 52.1
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 5.8e-09 63.9 68 57.4
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.8e-09 63.9 64 59.4
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 5.8e-09 63.9 59 67.8
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 5.8e-09 63.9 75 60.0
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 53.5
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 52.1
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 53.5
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 52.1
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 53.5
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 7.5e-09 63.5 65 61.5
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 57.7
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 7.5e-09 63.5 70 61.4
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 7.5e-09 63.5 71 57.7
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 9.8e-09 63.2 71 59.2
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 9.8e-09 63.2 77 57.1
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 9.8e-09 63.2 77 57.1
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 63 60.3
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.3e-08 62.8 73 50.7
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 53.5
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 1.7e-08 62.4 71 52.1
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 1.7e-08 62.4 71 52.1
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 2.2e-08 62.0 71 50.7
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.2e-08 62.0 52 75.0
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.2e-08 62.0 55 65.5
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.2e-08 62.0 73 57.5
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 3.7e-08 61.2 71 59.2
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 3.7e-08 61.2 73 54.8
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 4.9e-08 60.8 70 57.1
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 6.4e-08 60.5 52 69.2
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 6.4e-08 60.5 65 53.8
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 6.4e-08 60.5 72 55.6
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 6.4e-08 60.5 49 59.2
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 6.4e-08 60.5 62 46.8
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 6.4e-08 60.5 68 52.9
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 8.3e-08 60.1 71 47.9
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 8.3e-08 60.1 67 53.7
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 8.3e-08 60.1 57 59.6
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.1e-07 59.7 71 50.7
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.1e-07 59.7 76 56.6
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.4e-07 59.3 64 56.2
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 1.9e-07 58.9 55 63.6
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.9e-07 58.9 67 59.7
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.4e-07 58.5 67 61.2
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.4e-07 58.5 73 56.2
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 2.4e-07 58.5 71 56.3
Carub.0004s1352 Capsella rubella HOM05D002385 ORTHO05D002245 3.2e-07 58.2 73 50.7
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 3.2e-07 58.2 71 57.7
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.2e-07 58.2 68 55.9
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 3.2e-07 58.2 68 55.9
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 4.1e-07 57.8 64 54.7
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 5.4e-07 57.4 45 60.0
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 5.4e-07 57.4 56 64.3
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 5.4e-07 57.4 70 54.3
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 7.0e-07 57.0 71 49.3
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 7.0e-07 57.0 73 57.5
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 9.2e-07 56.6 72 44.4
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 9.2e-07 56.6 72 47.2
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 9.2e-07 56.6 73 52.1
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 9.2e-07 56.6 73 52.1
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 1.2e-06 56.2 57 47.4
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 1.2e-06 56.2 52 69.2
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 1.2e-06 56.2 61 60.7
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.6e-06 55.8 85 49.4
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 1.6e-06 55.8 65 44.6
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 2.0e-06 55.5 74 55.4
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.0e-06 55.5 68 55.9
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 2.0e-06 55.5 64 50.0
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.7e-06 55.1 66 60.6
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.7e-06 55.1 66 50.0
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 2.7e-06 55.1 74 45.9
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 2.7e-06 55.1 72 52.8
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.5e-06 54.7 66 53.0
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 3.5e-06 54.7 76 52.6
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 3.5e-06 54.7 74 40.5
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 3.5e-06 54.7 60 46.7
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 3.5e-06 54.7 68 38.2
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 3.5e-06 54.7 56 58.9
VMungo0540G2222 Vigna mungo HOM05D002385 ORTHO05D002245 3.5e-06 54.7 56 51.8
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.5e-06 54.7 71 53.5
FAN23G2683 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.6e-06 54.3 61 59.0
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 4.6e-06 54.3 76 40.8
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 6.0e-06 53.9 76 51.3
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.0e-06 53.9 69 49.3
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 6.0e-06 53.9 78 50.0
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 6.0e-06 53.9 75 52.0
Prupe.6G185100 Prunus persica HOM05D002385 ORTHO05D002245 7.8e-06 53.5 83 49.4
Prupe.6G185300 Prunus persica HOM05D002385 ORTHO05D002245 7.8e-06 53.5 83 49.4
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 7.8e-06 53.5 59 42.4


User provided reference genes

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