Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 2.1e-82 308.9 151 100.0
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 6.4e-71 270.8 175 80.0
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.2e-64 250.0 175 73.1
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-64 250.0 175 73.1
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.6e-64 248.8 175 72.6
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 4.5e-56 221.5 175 66.3
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 4.6e-53 211.5 175 62.9
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 7.9e-53 210.7 173 63.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 2.5e-51 205.7 175 59.4
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 7.4e-51 204.1 175 61.1
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.3e-50 203.4 175 60.0
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 4.8e-50 201.4 175 61.1
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 6.2e-50 201.1 175 58.9
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.4e-49 199.9 177 58.2
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 3.1e-49 198.7 155 66.5
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 4.0e-49 198.4 175 58.9
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 4.0e-49 198.4 175 60.6
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 5.3e-49 198.0 175 58.9
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 6.9e-49 197.6 175 60.0
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.5e-48 196.4 175 59.4
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.6e-48 195.7 177 58.2
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.4e-48 195.3 164 60.4
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 5.8e-48 194.5 159 62.3
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.7e-47 193.0 175 56.6
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 2.2e-47 192.6 175 56.6
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 2.9e-47 192.2 177 58.8
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 2.9e-47 192.2 175 57.1
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 3.8e-47 191.8 177 56.5
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 6.5e-47 191.0 175 57.1
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 8.4e-47 190.7 175 57.1
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 8.4e-47 190.7 176 56.2
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 1.4e-46 189.9 175 57.7
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.4e-46 189.9 177 59.9
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 2.5e-46 189.1 174 59.2
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.5e-46 189.1 159 60.4
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 2.5e-46 189.1 159 60.4
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 2.5e-46 189.1 175 56.6
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.2e-46 188.7 177 55.9
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 4.2e-46 188.3 175 56.0
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 5.5e-46 188.0 176 55.7
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 5.5e-46 188.0 175 57.1
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 7.1e-46 187.6 175 56.6
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 7.1e-46 187.6 153 62.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 9.3e-46 187.2 175 55.4
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.6e-45 186.4 145 66.9
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.6e-45 186.4 159 60.4
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.6e-45 186.4 175 56.6
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.6e-45 186.4 175 56.6
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.1e-45 186.0 159 59.7
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 2.1e-45 186.0 175 57.7
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 2.7e-45 185.7 154 63.6
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.0e-45 184.5 159 59.7
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 6.0e-45 184.5 152 61.8
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 7.9e-45 184.1 175 54.9
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 1.8e-44 183.0 151 61.6
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 2.3e-44 182.6 175 54.9
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 3.9e-44 181.8 175 56.0
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 5.1e-44 181.4 175 54.3
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 1.5e-43 179.9 176 55.1
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 9.6e-43 177.2 198 51.5
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 9.6e-43 177.2 176 55.1
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 9.6e-43 177.2 155 60.0
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.8e-42 175.6 131 67.2
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 6.3e-42 174.5 153 60.8
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 8.2e-42 174.1 175 52.6
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 8.2e-42 174.1 176 53.4
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 5.3e-41 171.4 176 53.4
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 3.4e-40 168.7 157 56.7
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 5.9e-40 167.9 178 51.7
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.7e-39 166.4 158 57.6
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 2.9e-39 165.6 158 57.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 8.5e-39 164.1 176 53.4
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 7.2e-38 161.0 139 60.4
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 9.3e-38 160.6 175 50.3
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 1.2e-37 160.2 150 54.7
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.1e-37 159.5 175 48.6
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.1e-37 159.5 175 49.7
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 3.6e-37 158.7 164 51.8
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.8e-36 156.4 157 52.2
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.8e-36 156.4 145 56.6
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.0e-36 155.6 149 53.7
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 6.7e-36 154.5 134 59.0
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.9e-35 152.9 149 53.0
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 1.9e-35 152.9 149 53.7
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 2.5e-35 152.5 176 49.4
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.3e-35 152.1 149 53.0
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 5.7e-35 151.4 149 51.7
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.3e-34 150.2 167 48.5
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.3e-34 150.2 167 48.5
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.3e-34 150.2 167 48.5
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 4.8e-34 148.3 145 51.7
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 8.2e-34 147.5 145 52.4
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 1.1e-33 147.1 145 51.7
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 3.1e-33 145.6 157 50.3
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 4.1e-33 145.2 177 46.3
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.0e-31 140.6 134 56.7
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.2e-31 139.4 134 56.0
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 1.1e-30 137.1 130 56.2
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 1.9e-30 136.3 137 53.3
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 7.2e-30 134.4 133 53.4
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 7.2e-30 134.4 150 50.0
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-29 133.7 74 83.8
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.6e-29 133.3 82 72.0
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.6e-29 133.3 158 46.8
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.6e-29 132.1 116 59.5
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.3e-28 129.4 82 72.0
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 5.1e-28 128.3 80 72.5
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 6.7e-28 127.9 128 53.9
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 7.4e-27 124.4 80 68.8
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 9.7e-27 124.0 134 50.7
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.3e-26 123.6 82 68.3
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 4.8e-26 121.7 80 70.0
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 4.5e-24 115.2 82 67.1
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 7.7e-24 114.4 125 48.8
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.3e-23 113.6 143 44.1
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.2e-23 112.8 107 56.1
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 2.9e-23 112.5 136 44.9
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.9e-23 112.5 109 54.1
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 2.5e-22 109.4 133 44.4
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.2e-22 108.6 119 48.7
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 5.7e-19 98.2 54 83.3
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 2.2e-18 96.3 138 42.8
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.3e-15 87.0 100 49.0
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 3.2e-14 82.4 126 38.9
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.6e-13 80.1 45 77.8
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 4.8e-10 68.6 95 41.1
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 6.3e-10 68.2 156 32.1
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.1e-09 67.4 59 55.9
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 2.4e-09 66.2 38 78.9
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 3.1e-09 65.9 77 46.8


User provided reference genes

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