Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 6.8e-66 253.8 126 100.0
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 4.4e-65 251.1 126 98.4
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.4e-65 251.1 126 98.4
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.4e-65 251.1 126 98.4
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.4e-65 251.1 126 98.4
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 4.4e-65 251.1 126 98.4
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 1.8e-63 245.7 124 96.8
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 5.4e-63 244.2 124 96.0
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 9.1e-63 243.4 123 95.9
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 5.9e-62 240.7 124 95.2
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 5.9e-62 240.7 126 93.7
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 1.1e-60 236.5 126 91.3
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 2.5e-60 235.3 125 91.2
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 3.3e-60 235.0 122 91.8
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 3.3e-60 235.0 127 90.6
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 4.2e-60 234.6 125 91.2
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 4.2e-60 234.6 127 89.8
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 5.6e-60 234.2 125 92.0
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 5.6e-60 234.2 125 92.0
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 7.2e-60 233.8 126 89.7
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 9.5e-60 233.4 126 90.5
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 9.5e-60 233.4 127 90.6
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 1.2e-59 233.0 123 90.2
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 1.6e-59 232.6 126 89.7
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 87.4
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 89.0
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 2.1e-59 232.3 123 91.1
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 2.1e-59 232.3 127 89.8
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 2.8e-59 231.9 125 90.4
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 2.8e-59 231.9 127 88.2
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.8e-59 231.9 127 88.2
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 3.6e-59 231.5 126 88.9
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 3.6e-59 231.5 127 89.8
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 4.7e-59 231.1 126 88.1
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 4.7e-59 231.1 126 89.7
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 6.1e-59 230.7 125 91.2
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 1.0e-58 229.9 125 88.0
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 1.0e-58 229.9 126 88.1
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.0e-58 229.9 127 89.0
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.0e-58 229.9 127 86.6
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 1.0e-58 229.9 123 87.8
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 1.4e-58 229.6 126 89.7
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 1.4e-58 229.6 127 86.6
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.1
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 1.8e-58 229.2 127 86.6
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 1.8e-58 229.2 127 89.0
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 1.8e-58 229.2 127 86.6
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 2.3e-58 228.8 127 85.8
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 2.3e-58 228.8 125 88.8
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.0e-58 228.4 127 85.8
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 3.0e-58 228.4 125 89.6
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 3.0e-58 228.4 127 87.4
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 4.0e-58 228.0 125 88.0
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 4.0e-58 228.0 125 88.0
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 87.3
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 88.9
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 5.2e-58 227.6 121 90.1
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 5.2e-58 227.6 121 90.1
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 6.8e-58 227.3 126 87.3
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 6.8e-58 227.3 126 87.3
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 6.8e-58 227.3 126 87.3
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 6.8e-58 227.3 127 85.0
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 6.8e-58 227.3 125 88.0
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 6.8e-58 227.3 126 87.3
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 8.9e-58 226.9 127 85.8
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 8.9e-58 226.9 125 89.6
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 8.9e-58 226.9 123 88.6
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 1.2e-57 226.5 127 84.3
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 1.2e-57 226.5 126 87.3
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 1.5e-57 226.1 127 85.0
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.0e-57 225.7 123 90.2
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 2.6e-57 225.3 127 85.0
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 2.6e-57 225.3 126 86.5
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 4.4e-57 224.6 126 84.9
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.4e-57 224.6 125 84.8
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 5.7e-57 224.2 127 86.6
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.7e-57 224.2 125 84.8
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 5.7e-57 224.2 125 84.8
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 5.7e-57 224.2 123 87.8
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 7.5e-57 223.8 126 86.5
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 9.8e-57 223.4 127 85.0
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 9.8e-57 223.4 126 84.9
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 9.8e-57 223.4 125 84.8
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 9.8e-57 223.4 127 86.6
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.7e-56 222.6 125 84.0
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 1.7e-56 222.6 127 85.0
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.2e-56 222.2 124 85.5
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.2e-56 222.2 124 85.5
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 2.2e-56 222.2 127 84.3
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.9e-56 221.9 127 83.5
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 2.9e-56 221.9 124 88.7
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 2.9e-56 221.9 124 86.3
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 2.9e-56 221.9 127 82.7
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 3.7e-56 221.5 127 84.3
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 3.7e-56 221.5 127 82.7
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.9e-56 221.1 127 84.3
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 6.4e-56 220.7 124 86.3
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 8.3e-56 220.3 124 86.3
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 8.3e-56 220.3 125 88.0
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.4e-55 219.5 126 84.1
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 1.8e-55 219.2 127 82.7
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 2.4e-55 218.8 124 87.1
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.4e-55 218.8 127 84.3
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 3.2e-55 218.4 123 83.7
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 4.1e-55 218.0 126 86.5
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 5.4e-55 217.6 124 83.9
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 5.4e-55 217.6 124 83.9
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 7.0e-55 217.2 126 83.3
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.2e-54 216.5 124 83.9
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 1.6e-54 216.1 124 84.7
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 3.5e-54 214.9 126 83.3
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 5.9e-54 214.2 115 87.0
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 5.9e-54 214.2 125 83.2
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 1.0e-53 213.4 124 84.7
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.3e-53 213.0 124 83.1
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 1.7e-53 212.6 124 83.1
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 1.7e-53 212.6 126 81.0
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 2.3e-53 212.2 124 81.5
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 1.5e-52 209.5 123 79.7
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 1.9e-52 209.1 115 85.2
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 2.5e-52 208.8 114 87.7
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 1.2e-51 206.5 112 90.2
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 3.6e-51 204.9 110 91.8
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 2.3e-50 202.2 118 84.7
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 4.0e-50 201.4 112 88.4
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 1.2e-49 199.9 125 78.4
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.0e-49 199.1 103 93.2
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 2.6e-49 198.7 112 86.6
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 2.6e-49 198.7 111 89.2
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.6e-49 198.7 107 87.9
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 5.8e-49 197.6 128 78.9
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 5.8e-49 197.6 107 87.9
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 7.5e-49 197.2 125 78.4
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 2.0e-46 189.1 125 77.6
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 1.3e-45 186.4 101 90.1
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 1.3e-45 186.4 134 70.9
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 1.7e-45 186.0 108 86.1
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 1.7e-45 186.0 125 71.2
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 8.6e-45 183.7 98 88.8
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 3.6e-43 178.3 90 92.2
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 2.2e-40 169.1 102 82.4
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 1.9e-39 166.0 123 66.7
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.1e-39 164.9 98 81.6
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 9.2e-39 163.7 88 83.0
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 3.5e-38 161.8 125 61.6
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 1.0e-37 160.2 102 77.5
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 1.5e-36 156.4 132 64.4
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.5e-36 155.6 127 59.1
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.7e-32 142.9 69 94.2
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 2.4e-31 139.0 124 54.8
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.6e-30 136.3 127 57.5
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 1.7e-29 132.9 119 53.8
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 1.1e-26 123.6 57 94.7
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.4e-26 123.2 114 57.9
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 6.8e-26 120.9 108 57.4
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 2.7e-22 109.0 74 59.5
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 1.1e-20 103.6 94 52.1
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.5e-20 103.2 81 55.6
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.9e-20 102.8 129 44.2
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 3.3e-20 102.1 62 83.9
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 8.4e-16 87.4 47 87.2
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 3.3e-12 75.5 35 97.1
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 2.0e-09 66.2 32 87.5
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 2.2e-08 62.8 35 77.1
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 3.8e-08 62.0 33 78.8


User provided reference genes

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