Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0109901 Rosa chinensis HOM05D004344 ORTHO05D006026 3.0e-31 137.9 69 100.0
RcHm_v2.0_Chr2g0117021 Rosa chinensis HOM05D004344 ORTHO05D006026 1.2e-24 115.9 65 89.2
FAN26G0646 Fragaria x ananassa HOM05D004344 ORTHO05D006026 1.1e-17 92.8 65 78.5
FvH4_1g22730 Fragaria vesca HOM05D004344 ORTHO05D006026 3.5e-16 87.8 63 76.2
FAN19G2019 Fragaria x ananassa HOM05D004344 ORTHO05D006026 3.5e-16 87.8 63 76.2
FAN23G1634 Fragaria x ananassa HOM05D004344 ORTHO05D006026 3.5e-16 87.8 63 76.2
Prupe.7G131600 Prunus persica HOM05D004344 ORTHO05D006026 2.4e-12 75.1 64 67.2
QL06p040994 Quercus lobata HOM05D004344 ORTHO05D006026 9.0e-12 73.2 64 59.4
CANSAT01G0155 Cannabis sativa HOM05D004344 ORTHO05D006026 2.6e-11 71.6 56 64.3
Manes.13G122900 Manihot esculenta HOM05D004344 ORTHO05D006026 7.6e-11 70.1 52 65.4
Gohir.D11G200300 Gossypium hirsutum HOM05D004344 ORTHO05D006026 1.7e-10 68.9 62 56.5
Gorai.007G214600 Gossypium raimondii HOM05D004344 ORTHO05D006026 1.7e-10 68.9 62 56.5
Gohir.A11G193200 Gossypium hirsutum HOM05D004344 ORTHO05D006026 2.2e-10 68.6 62 56.5
MD15G1285400 Malus domestica HOM05D004344 ORTHO05D006026 2.2e-10 68.6 64 62.5
Cfa004033 Carpinus fangiana HOM05D004344 ORTHO05D006026 3.8e-10 67.8 64 57.8
MD02G1174200 Malus domestica HOM05D004344 ORTHO05D006026 4.9e-10 67.4 64 59.4
Duzib147G0141 Durio zibethinus HOM05D004344 ORTHO05D006026 6.4e-10 67.0 55 60.0
Haze_15381 Corylus avellana HOM05D004344 ORTHO05D006026 8.4e-10 66.6 63 58.7
Sabra07G0040300 Salix brachista HOM05D004344 ORTHO05D006026 1.1e-09 66.2 64 54.7
COL.COLO4_11441 Corchorus olitorius HOM05D004344 ORTHO05D006026 1.4e-09 65.9 62 56.5
Potri.007G045300 Populus trichocarpa HOM05D004344 ORTHO05D006026 1.4e-09 65.9 59 57.6
vmacro05947 Vaccinium macrocarpon HOM05D004344 ORTHO05D006026 1.4e-09 65.9 44 68.2
Thecc.01G058600 Theobroma cacao HOM05D004344 ORTHO05D006026 1.9e-09 65.5 60 56.7
TAR376G0722 Trochodendron aralioides HOM05D004344 ORTHO05D006026 1.9e-09 65.5 63 57.1
VMungo1215G1933 Vigna mungo HOM05D004344 ORTHO05D006026 1.9e-09 65.5 52 63.5
Atru.chr3.306 Acer truncatum HOM05D004344 ORTHO05D006026 2.4e-09 65.1 51 60.8
CiPaw.01G016700 Carya illinoinensis HOM05D004344 ORTHO05D006026 2.4e-09 65.1 64 56.2
AUR62003893 Chenopodium quinoa HOM05D004344 ORTHO05D006026 2.4e-09 65.1 54 64.8
PGR102G1820 Punica granatum HOM05D004344 ORTHO05D006026 2.4e-09 65.1 51 58.8
TPR.G26904 Trifolium pratense HOM05D004344 ORTHO05D006026 2.4e-09 65.1 54 59.3
Lj3g0019632 Lotus japonicus HOM05D004344 ORTHO05D006026 3.2e-09 64.7 56 58.9
Phvul.002G017900 Phaseolus vulgaris HOM05D004344 ORTHO05D006026 3.2e-09 64.7 53 60.4
AUR62001915 Chenopodium quinoa HOM05D004344 ORTHO05D006026 4.2e-09 64.3 54 64.8
Ca_24759_v3 Cicer arietinum L. HOM05D004344 ORTHO05D006026 4.2e-09 64.3 58 53.4
Sed0002898 Sechium edule HOM05D004344 ORTHO05D006026 4.2e-09 64.3 57 56.1
MELO3C020860.2 Cucumis melo HOM05D004344 ORTHO05D006026 5.4e-09 63.9 52 59.6
HanXRQChr14g0449061 Helianthus annuus HOM05D004344 ORTHO05D006026 5.4e-09 63.9 47 66.0
CSS0049451 Camellia sinensis var. sinensis HOM05D004344 ORTHO05D006026 7.1e-09 63.5 56 57.1
Dinv26836 Davidia involucrata HOM05D004344 ORTHO05D006026 7.1e-09 63.5 43 69.8
BcaB02g09958 Brassica carinata HOM05D004344 ORTHO05D006026 9.3e-09 63.2 44 61.4
Cpa.g.sc55.134 Carica papaya HOM05D004344 ORTHO05D006026 9.3e-09 63.2 47 63.8
Sc03g0001670 Simmondsia chinensis HOM05D004344 ORTHO05D006026 9.3e-09 63.2 52 63.5
CARHR066690 Cardamine hirsuta HOM05D004344 ORTHO05D006026 1.2e-08 62.8 41 68.3
Lj2g0014817 Lotus japonicus HOM05D004344 ORTHO05D006026 1.2e-08 62.8 67 50.7
SGA_v2.0_scaffold15G07321 Striga asiatica HOM05D004344 ORTHO05D006026 1.2e-08 62.8 40 72.5
AT5G67100 Arabidopsis thaliana HOM05D004344 ORTHO05D006026 1.6e-08 62.4 44 63.6
Hma1.2p1_0017F.1_g011490 Hydrangea macrophylla HOM05D004344 ORTHO05D006026 1.6e-08 62.4 71 49.3
AL8G44260 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 2.1e-08 62.0 41 65.9
BcaC06g34790 Brassica carinata HOM05D004344 ORTHO05D006026 2.1e-08 62.0 41 65.9
A07p16860 Brassica napus HOM05D004344 ORTHO05D006026 2.1e-08 62.0 44 63.6
C07p24670 Brassica napus HOM05D004344 ORTHO05D006026 2.1e-08 62.0 41 65.9
BolC7t42987H Brassica oleracea HOM05D004344 ORTHO05D006026 2.1e-08 62.0 41 65.9
BraA07t29411Z Brassica rapa HOM05D004344 ORTHO05D006026 2.1e-08 62.0 44 63.6
CsaV3_2G016500 Cucumis sativus L. HOM05D004344 ORTHO05D006026 2.1e-08 62.0 52 57.7
Rhsim10G0115900 Rhododendron simsii HOM05D004344 ORTHO05D006026 2.1e-08 62.0 63 54.0
Aa31LG1G15620 Aethionema arabicum HOM05D004344 ORTHO05D006026 2.7e-08 61.6 42 64.3
Medtr5g017070 Medicago truncatula HOM05D004344 ORTHO05D006026 2.7e-08 61.6 58 53.4
Ah.03g145340 Amaranthus hybridus HOM05D004344 ORTHO05D006026 4.6e-08 60.8 58 58.6
Cc07_g06110 Coffea canephora HOM05D004344 ORTHO05D006026 4.6e-08 60.8 54 59.3
A02p33280 Brassica napus HOM05D004344 ORTHO05D006026 6.0e-08 60.5 52 57.7
BraA02t08352Z Brassica rapa HOM05D004344 ORTHO05D006026 6.0e-08 60.5 52 57.7
Carub.0008s2741 Capsella rubella HOM05D004344 ORTHO05D006026 6.0e-08 60.5 44 63.6
Lj7C70T9 Lonicera japonica HOM05D004344 ORTHO05D006026 6.0e-08 60.5 39 69.2
Nn5g30338 Nelumbo nucifera HOM05D004344 ORTHO05D006026 6.0e-08 60.5 44 65.9
VMungo0464G2085 Vigna mungo HOM05D004344 ORTHO05D006026 6.0e-08 60.5 36 75.0
arahy.Tifrunner.gnm1.ann1.7M3CIR Arachis hypogaea HOM05D004344 ORTHO05D006026 7.9e-08 60.1 39 71.8
arahy.Tifrunner.gnm1.ann1.EE0YL2 Arachis hypogaea HOM05D004344 ORTHO05D006026 7.9e-08 60.1 39 71.8
arahy.Tifrunner.gnm1.ann1.KW6QS2 Arachis hypogaea HOM05D004344 ORTHO05D006026 7.9e-08 60.1 39 71.8
ECA238G4385 Erigeron canadensis HOM05D004344 ORTHO05D006026 7.9e-08 60.1 47 61.7
GSVIVG01022113001 Vitis vinifera HOM05D004344 ORTHO05D006026 7.9e-08 60.1 64 56.2
CARHR280550 Cardamine hirsuta HOM05D004344 ORTHO05D006026 1.0e-07 59.7 61 52.5
DCAR_025744 Daucus carota HOM05D004344 ORTHO05D006026 1.0e-07 59.7 55 50.9
Dinv29997 Davidia involucrata HOM05D004344 ORTHO05D006026 1.0e-07 59.7 64 53.1
Psat2g166640 Pisum sativum HOM05D004344 ORTHO05D006026 1.0e-07 59.7 57 52.6
Lalb_Chr09g0323231 Lupinus albus HOM05D004344 ORTHO05D006026 1.3e-07 59.3 46 63.0
unitig_899.g14946 Utricularia gibba HOM05D004344 ORTHO05D006026 1.3e-07 59.3 42 64.3
THA.LOC104827210 Tarenaya hassleriana HOM05D004344 ORTHO05D006026 1.8e-07 58.9 36 72.2
ATR0584G066 Amborella trichopoda HOM05D004344 ORTHO05D006026 2.3e-07 58.5 39 64.1
BcaC03g17194 Brassica carinata HOM05D004344 ORTHO05D006026 2.3e-07 58.5 42 61.9
C02p51210 Brassica napus HOM05D004344 ORTHO05D006026 2.3e-07 58.5 42 61.9
BolC2t11212H Brassica oleracea HOM05D004344 ORTHO05D006026 2.3e-07 58.5 42 61.9
Sp2g29580 Schrenkiella parvula HOM05D004344 ORTHO05D006026 2.3e-07 58.5 41 63.4
Oeu020531.3 Olea europaea HOM05D004344 ORTHO05D006026 3.0e-07 58.2 56 53.6
Os01g0868300 Oryza sativa ssp. japonica HOM05D004344 ORTHO05D006026 3.0e-07 58.2 61 52.5
Solyc02g093300.3 Solanum lycopersicum HOM05D004344 ORTHO05D006026 3.0e-07 58.2 40 62.5
Sopen02g037860 Solanum pennellii HOM05D004344 ORTHO05D006026 3.0e-07 58.2 40 62.5
CAN.G370.49 Capsicum annuum HOM05D004344 ORTHO05D006026 3.9e-07 57.8 40 62.5
Migut.H00422 Erythranthe guttata HOM05D004344 ORTHO05D006026 3.9e-07 57.8 48 54.2
TWI09G1157 Tripterygium wilfordii HOM05D004344 ORTHO05D006026 3.9e-07 57.8 47 59.6
Nitab4.5_0002029g0030 Nicotiana tabacum HOM05D004344 ORTHO05D006026 5.1e-07 57.4 40 62.5
Nitab4.5_0003519g0040 Nicotiana tabacum HOM05D004344 ORTHO05D006026 5.1e-07 57.4 40 62.5
EL10Ac6g15730 Beta vulgaris HOM05D004344 ORTHO05D006026 6.7e-07 57.0 59 52.5
Oeu023198.1 Olea europaea HOM05D004344 ORTHO05D006026 6.7e-07 57.0 42 61.9
Hund16343 Selenicereus undatus HOM05D004344 ORTHO05D006026 6.7e-07 57.0 58 53.4
HPP92_025047 Vanilla planifolia HOM05D004344 ORTHO05D006026 6.7e-07 57.0 53 50.9
Thhalv10003515m.g Eutrema salsugineum HOM05D004344 ORTHO05D006026 8.7e-07 56.6 44 56.8
Glyma.01G187400 Glycine max HOM05D004344 ORTHO05D006026 8.7e-07 56.6 61 54.1
Peaxi162Scf00450g00127 Petunia axillaris HOM05D004344 ORTHO05D006026 8.7e-07 56.6 53 54.7
SEGI_19753 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 8.7e-07 56.6 43 60.5
SEGI_41015 Sequoiadendron giganteum HOM05D004344 ORTHO05D006026 8.7e-07 56.6 43 60.5
CDE04G1072 Ceratophyllum demersum HOM05D004344 ORTHO05D006026 1.1e-06 56.2 66 43.9
Ciclev10024699m.g Citrus clementina HOM05D004344 ORTHO05D006026 1.1e-06 56.2 63 44.4
Carub.0008s0466 Capsella rubella HOM05D004344 ORTHO05D006026 1.5e-06 55.8 49 53.1
Lsat_1_v5_gn_2_84960 Lactuca sativa HOM05D004344 ORTHO05D006026 1.5e-06 55.8 38 68.4
Aqoxy7G02851 Aquilegia oxysepala HOM05D004344 ORTHO05D006026 4.3e-06 54.3 60 51.7
AL8G20700 Arabidopsis lyrata HOM05D004344 ORTHO05D006026 4.3e-06 54.3 46 52.2
Eucgr.H01686 Eucalyptus grandis HOM05D004344 ORTHO05D006026 4.3e-06 54.3 52 50.0
MSTRG.23740 Avicennia marina HOM05D004344 ORTHO05D006026 9.6e-06 53.1 52 53.8


User provided reference genes

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