Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.1e-292 1009.2 486 100.0
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 8.2e-253 876.7 454 93.0
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-244 849.0 447 90.8
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-243 846.3 447 90.2
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.3e-242 842.8 450 89.8
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.0e-242 840.9 445 89.9
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.5e-242 840.1 457 88.8
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 5.4e-236 820.8 447 87.2
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.0e-234 816.6 451 85.6
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.9e-233 812.4 451 84.0
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 4.2e-233 811.2 452 84.1
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.1e-232 808.9 450 85.8
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 3.0e-231 805.1 464 82.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 5.2e-231 804.3 450 83.6
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 5.2e-231 804.3 450 83.6
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 8.8e-231 803.5 449 83.3
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 8.8e-231 803.5 449 84.0
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.6e-230 802.0 447 84.3
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 7.5e-230 800.4 445 84.0
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.3e-229 799.7 450 82.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 3.7e-229 798.1 486 78.6
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 4.9e-229 797.7 449 83.5
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 6.3e-229 797.3 450 83.8
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 8.3e-229 797.0 452 82.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.4e-228 796.2 449 83.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.8e-228 795.8 448 83.5
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.8e-228 795.8 447 83.2
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 3.1e-228 795.0 449 83.3
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 5.4e-228 794.3 450 82.2
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 7.0e-228 793.9 447 82.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.2e-227 793.1 448 83.3
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 1.6e-227 792.7 450 81.6
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.6e-227 792.7 449 83.1
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 4.5e-227 791.2 447 83.2
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-226 789.6 443 83.5
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.7e-226 789.3 444 83.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.3e-226 788.9 444 83.1
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 5.0e-226 787.7 447 81.4
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 6.6e-226 787.3 449 82.2
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.1e-225 786.6 447 82.8
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 1.9e-225 785.8 445 82.7
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.9e-225 785.8 445 82.9
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 5.6e-225 784.3 452 81.0
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 9.5e-225 783.5 450 81.3
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 9.5e-225 783.5 446 81.6
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 9.5e-225 783.5 443 82.2
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 9.5e-225 783.5 463 79.7
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 9.5e-225 783.5 447 81.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.2e-224 783.1 447 82.6
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.6e-224 782.7 447 81.4
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.6e-224 782.7 453 82.1
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.6e-224 782.7 447 81.7
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.1e-224 782.3 444 82.0
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 2.8e-224 781.9 537 71.1
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.4e-223 779.6 446 81.8
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.4e-223 779.6 447 81.0
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.3e-223 778.9 454 80.0
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 4.0e-223 778.1 443 81.3
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 5.2e-223 777.7 449 81.7
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 6.8e-223 777.3 447 81.4
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 6.8e-223 777.3 449 80.6
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.5e-222 776.2 473 77.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.4e-222 775.0 443 81.3
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 4.4e-222 774.6 443 81.9
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 5.7e-222 774.2 446 81.2
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 7.5e-222 773.9 444 82.2
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 1.7e-221 772.7 442 81.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.2e-221 772.3 446 81.2
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.2e-221 772.3 449 81.5
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 3.7e-221 771.5 454 80.2
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 4.1e-220 768.1 447 80.3
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 4.1e-220 768.1 447 80.3
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.4e-220 767.7 447 80.8
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 7.0e-220 767.3 446 80.5
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 7.0e-220 767.3 450 79.6
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 9.2e-220 766.9 445 81.3
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 9.2e-220 766.9 496 75.6
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.6e-219 766.1 449 79.5
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.0e-219 765.8 447 80.5
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 7.8e-219 763.8 444 79.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 1.0e-218 763.5 447 80.1
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.3e-218 763.1 447 80.5
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.3e-218 763.1 447 79.6
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 1.3e-218 763.1 444 81.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.3e-218 762.3 446 79.6
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 3.9e-218 761.5 447 80.5
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 8.6e-218 760.4 447 79.4
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.1e-217 760.0 447 79.4
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.1e-217 760.0 447 79.4
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.1e-217 760.0 450 80.0
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.1e-217 760.0 447 79.6
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.5e-217 759.6 447 80.1
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.9e-217 759.2 477 76.5
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.9e-217 759.2 447 79.2
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.9e-217 759.2 484 75.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 3.3e-217 758.4 447 80.3
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 5.6e-217 757.7 447 80.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.2e-216 756.5 447 79.0
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.6e-216 756.1 433 80.8
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.3e-210 736.5 443 77.7
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 3.0e-210 735.3 441 79.1
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 3.3e-209 731.9 443 77.0
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 4.3e-209 731.5 446 78.0
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.5e-206 723.0 446 77.1
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 6.4e-205 717.6 406 82.8
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.9e-204 716.1 446 77.1
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.0e-202 710.3 443 74.9
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.8e-199 699.5 375 86.1
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.6e-198 695.7 443 76.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 9.9e-198 693.7 485 69.9
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.2e-190 670.2 441 73.5
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 4.9e-189 664.8 451 71.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.4e-189 664.5 463 71.1
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.2e-187 660.2 440 71.6
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.7e-187 659.1 452 69.0
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.0e-186 657.1 438 70.1
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.2e-182 643.7 382 79.1
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.4e-180 636.7 373 78.8
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.9e-177 626.3 334 87.7
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.9e-164 583.2 441 67.3
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.7e-157 560.1 428 65.9
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 2.9e-157 559.3 298 87.6
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.3e-154 550.4 299 86.6
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 2.6e-145 519.6 463 61.8
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 4.2e-140 502.3 310 75.2
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 3.1e-127 459.5 282 75.2
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.6e-126 457.2 451 54.3
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.4e-114 417.5 373 55.8
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.6e-107 394.0 289 64.0
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.3e-96 357.8 269 64.7
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.4e-82 311.2 197 75.1
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 9.2e-79 298.5 162 84.0
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 1.2e-70 271.6 198 71.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 3.6e-67 260.0 140 83.6
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.2e-67 259.2 148 78.4
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.9e-64 249.6 147 77.6
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.8e-58 231.1 271 46.5
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 4.5e-57 226.5 154 69.5
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 6.7e-53 212.6 135 76.3
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 8.7e-53 212.2 147 68.0
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.5e-52 210.7 146 63.7
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.9e-50 202.6 186 55.9
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 5.8e-49 199.5 111 85.6
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 2.5e-47 194.1 100 89.0
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 8.2e-35 152.5 127 58.3
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.4e-31 141.7 112 61.6
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.2e-24 117.9 55 96.4
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.1e-22 111.3 55 94.5
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.1e-18 97.4 61 77.0
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 2.0e-17 94.7 59 76.3
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 2.6e-17 94.4 51 80.4
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.5e-17 94.0 55 80.0
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 9.4e-15 85.9 46 80.4
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 3.6e-14 84.0 48 79.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 6.1e-14 83.2 56 64.3
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 8.0e-14 82.8 53 69.8
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 8.0e-14 82.8 67 53.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 6.7e-13 79.7 50 72.0
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.6e-12 77.8 60 63.3
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 8.2e-11 72.8 51 60.8
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 7.7e-09 66.2 168 28.6
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 3.8e-08 63.9 40 72.5


User provided reference genes

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