Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 0.0e+00 1350.5 673 100.0
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 0.0e+00 1264.6 679 94.1
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1139.8 671 84.8
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 0.0e+00 1132.5 673 84.7
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1125.2 703 81.5
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1110.5 657 84.8
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 0.0e+00 1087.8 657 82.8
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 9.0e-258 893.6 703 67.4
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.7e-256 889.4 676 69.1
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 3.3e-199 699.1 693 55.1
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 1.4e-194 683.7 699 50.5
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 2.0e-180 636.7 684 51.2
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 4.4e-180 635.6 685 51.4
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 8.3e-179 631.3 718 48.3
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 4.6e-177 625.5 678 50.6
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 1.5e-175 620.5 689 50.4
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.3e-173 613.2 600 53.3
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 5.2e-173 612.1 708 47.6
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 2.0e-172 610.1 676 50.1
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 3.2e-170 602.8 690 50.3
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.7e-168 597.0 693 48.3
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 5.2e-165 585.5 697 46.9
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 4.2e-162 575.9 682 48.5
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 1.6e-158 563.9 620 49.5
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.6e-158 563.9 687 45.7
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.1e-158 563.5 674 47.9
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 5.8e-156 555.4 674 47.3
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 9.9e-156 554.7 688 45.6
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 2.2e-155 553.5 673 47.3
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 2.9e-155 553.1 681 46.5
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 4.8e-150 535.8 687 44.4
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 6.9e-149 531.9 694 42.8
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 1.2e-148 531.2 698 44.6
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.1e-146 524.6 675 43.6
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 3.2e-146 523.1 686 44.8
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 1.6e-145 520.8 675 44.0
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 5.1e-144 515.8 672 44.8
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 1.1e-141 508.1 691 41.8
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 4.9e-139 499.2 679 43.3
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 4.9e-139 499.2 683 43.3
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 6.5e-139 498.8 683 42.8
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 6.3e-134 482.3 553 48.3
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 1.4e-133 481.1 534 50.6
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 1.2e-132 478.0 694 41.1
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 8.4e-131 471.9 692 40.9
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 4.2e-130 469.5 692 40.8
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.6e-129 467.6 693 41.1
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 1.6e-129 467.6 664 42.0
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.1e-129 467.2 672 41.7
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 2.7e-129 466.8 699 41.8
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 2.3e-128 463.8 686 41.3
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 8.7e-128 461.8 701 40.9
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 2.5e-127 460.3 612 42.5
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 4.3e-127 459.5 573 43.3
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 9.7e-127 458.4 688 40.6
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 9.0e-125 451.8 651 41.8
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 1.0e-123 448.4 697 41.3
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.4e-122 444.5 682 38.9
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 3.2e-122 443.4 713 39.1
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 7.2e-122 442.2 548 47.1
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 6.1e-121 439.1 708 41.1
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 6.1e-121 439.1 695 40.6
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 6.7e-120 435.6 684 41.1
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 1.1e-119 434.9 680 39.1
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 9.7e-119 431.8 716 39.5
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.7e-118 431.0 673 40.1
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 2.8e-118 430.3 593 42.8
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 4.8e-118 429.5 663 39.4
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 6.3e-118 429.1 673 39.5
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 8.2e-118 428.7 685 39.4
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 1.4e-117 427.9 675 39.3
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 3.4e-116 423.3 689 40.5
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 5.9e-116 422.5 602 42.5
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 5.5e-114 416.0 315 69.8
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 1.2e-113 414.8 669 39.2
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 4.7e-113 412.9 685 38.8
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 2.3e-112 410.6 604 41.6
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 6.7e-112 409.1 683 38.5
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 1.7e-107 394.4 641 38.4
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 6.5e-107 392.5 671 38.0
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 3.6e-105 386.7 708 37.4
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 5.2e-104 382.9 509 43.2
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 2.2e-102 377.5 738 36.0
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.5e-98 364.8 714 34.3
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 4.7e-97 359.8 686 36.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 8.0e-97 359.0 569 39.2
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 2.3e-96 357.5 428 46.5
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 9.8e-95 352.1 569 38.3
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.0e-88 330.1 191 85.3
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 5.2e-88 329.7 668 34.4
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 5.7e-87 326.2 438 43.4
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 5.7e-87 326.2 366 47.5
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 2.0e-84 317.8 437 43.2
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 2.7e-84 317.4 690 35.1
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 5.9e-84 316.2 660 35.5
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 8.6e-83 312.4 670 35.1
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 1.1e-82 312.0 682 33.1
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 9.8e-79 298.9 688 32.4
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 2.7e-76 290.8 390 41.3
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 7.3e-66 256.1 386 41.7
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 2.2e-62 244.6 320 42.2
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.8e-38 164.1 92 87.0
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.8e-38 164.1 92 87.0
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.4e-37 162.2 373 31.6
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 1.1e-32 146.0 98 76.5
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 1.1e-32 146.0 177 46.3
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 3.1e-32 144.4 166 48.2
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 4.8e-25 120.6 484 26.7
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 3.1e-24 117.9 136 46.3
unitig_78.g29629 Utricularia gibba HOM05D006685 ORTHO05D008244 5.5e-21 107.1 581 24.8
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.1e-18 99.4 228 31.6
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 5.7e-18 97.1 57 84.2
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.2e-15 89.4 365 27.4
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 8.5e-14 83.2 48 79.2
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 3.2e-13 81.3 654 23.4
SEGI_38886 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 2.8e-09 68.2 201 29.4
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 8.2e-09 66.6 267 27.0
MD06G1092100 Malus domestica HOM05D006685 ORTHO05D008244 1.1e-08 66.2 49 67.3
SEGI_35306 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 1.4e-08 65.9 134 34.3
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.2e-07 62.8 51 54.9
arahy.Tifrunner.gnm1.ann1.6LA5S9 Arachis hypogaea HOM05D002494 ORTHO05D002673 3.4e-07 61.2 48 60.4
arahy.Tifrunner.gnm1.ann1.G2N9P3 Arachis hypogaea HOM05D000296 ORTHO05D008244 5.9e-07 60.5 48 60.4


User provided reference genes

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