Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0095761 Rosa chinensis HOM05D005897 ORTHO05D007128 2.7e-106 388.7 191 100.0
FAN26G0251 Fragaria x ananassa HOM05D005897 ORTHO05D007128 3.3e-80 302.0 196 81.6
FAN28G0476 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.2e-79 300.1 196 81.6
FAN23G1701 Fragaria x ananassa HOM05D005897 ORTHO05D007128 2.0e-77 292.7 196 80.1
FAN26G0677 Fragaria x ananassa HOM05D005897 ORTHO05D007128 2.6e-77 292.4 197 80.7
FAN19G1802 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.1e-75 287.0 198 78.3
FvH4_1g09230 Fragaria vesca HOM05D005897 ORTHO05D007128 4.2e-75 285.0 198 77.8
MD15G1222300 Malus domestica HOM05D005897 ORTHO05D007128 8.5e-36 154.5 192 50.5
Prupe.7G193600 Prunus persica HOM05D005897 ORTHO05D007128 3.2e-35 152.5 204 49.5
Sabra06G0107900 Salix brachista HOM05D005897 ORTHO05D007128 5.7e-32 141.7 195 46.7
Cfa002951 Carpinus fangiana HOM05D005897 ORTHO05D007128 1.3e-31 140.6 189 47.6
CANSAT56G4244 Cannabis sativa HOM05D005897 ORTHO05D007128 2.2e-31 139.8 199 46.2
Gohir.A06G079100 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.4e-30 137.1 195 45.6
QL11p002200 Quercus lobata HOM05D005897 ORTHO05D007128 1.8e-30 136.7 209 42.1
Gohir.D06G078500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 3.1e-30 136.0 193 44.6
Haze_26054 Corylus avellana HOM05D005897 ORTHO05D007128 4.1e-30 135.6 188 46.3
Gohir.D05G036900 Gossypium hirsutum HOM05D005897 ORTHO05D007128 4.1e-30 135.6 196 46.9
Gorai.010G091500 Gossypium raimondii HOM05D005897 ORTHO05D007128 4.1e-30 135.6 193 44.6
Gorai.009G037400 Gossypium raimondii HOM05D005897 ORTHO05D007128 2.0e-29 133.3 196 46.4
Gohir.A05G035400 Gossypium hirsutum HOM05D005897 ORTHO05D007128 7.7e-29 131.3 196 44.9
CiPaw.04G140700 Carya illinoinensis HOM05D005897 ORTHO05D007128 2.9e-28 129.4 197 46.2
Manes.16G091700 Manihot esculenta HOM05D005897 ORTHO05D007128 3.8e-28 129.0 197 40.6
CiPaw.03G202200 Carya illinoinensis HOM05D005897 ORTHO05D007128 5.0e-28 128.6 191 44.0
Sp6g23730 Schrenkiella parvula HOM05D005897 ORTHO05D007128 5.0e-28 128.6 195 42.6
Duzib150G1683 Durio zibethinus HOM05D005897 ORTHO05D007128 6.5e-28 128.3 200 44.0
MD02G1099300 Malus domestica HOM05D005897 ORTHO05D007128 1.4e-27 127.1 199 44.2
Dinv42424 Davidia involucrata HOM05D005897 ORTHO05D007128 5.5e-27 125.2 194 45.9
Thhalv10014753m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 5.5e-27 125.2 186 42.5
TWI34G1248 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 7.2e-27 124.8 190 44.7
Thecc.09G071600 Theobroma cacao HOM05D005897 ORTHO05D007128 9.4e-27 124.4 191 40.3
BcaB08g36527 Brassica carinata HOM05D005897 ORTHO05D007128 2.1e-26 123.2 193 40.4
Carub.0006s1909 Capsella rubella HOM05D005897 ORTHO05D007128 2.7e-26 122.9 203 37.9
AT5G20790 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 4.7e-26 122.1 190 41.6
Ciclev10009511m.g Citrus clementina HOM05D005897 ORTHO05D007128 7.9e-26 121.3 183 39.3
COL.COLO4_21221 Corchorus olitorius HOM05D005897 ORTHO05D007128 7.9e-26 121.3 193 43.5
VMungo1309G2633 Vigna mungo HOM05D005897 ORTHO05D007128 7.9e-26 121.3 184 41.8
A03p10250 Brassica napus HOM05D005897 ORTHO05D007128 1.0e-25 120.9 194 39.2
BraA03t10334Z Brassica rapa HOM05D005897 ORTHO05D007128 1.0e-25 120.9 192 39.1
A10p19270 Brassica napus HOM05D005897 ORTHO05D007128 2.3e-25 119.8 183 41.5
BraA10t44004Z Brassica rapa HOM05D005897 ORTHO05D007128 3.9e-25 119.0 185 42.2
Duzib168G1262 Durio zibethinus HOM05D005897 ORTHO05D007128 5.2e-25 118.6 198 40.9
TWI32G0373 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 5.2e-25 118.6 187 41.7
C03p11770 Brassica napus HOM05D005897 ORTHO05D007128 6.7e-25 118.2 191 37.7
BolC3t13648H Brassica oleracea HOM05D005897 ORTHO05D007128 6.7e-25 118.2 191 37.7
Lj6g0011186 Lotus japonicus HOM05D005897 ORTHO05D007128 6.7e-25 118.2 187 42.8
PGR044G2287 Punica granatum HOM05D005897 ORTHO05D007128 6.7e-25 118.2 201 41.3
A02p06480 Brassica napus HOM05D005897 ORTHO05D007128 8.8e-25 117.9 185 40.5
BraA02t05593Z Brassica rapa HOM05D005897 ORTHO05D007128 8.8e-25 117.9 185 40.5
Nitab4.5_0008755g0010 Nicotiana tabacum HOM05D005897 ORTHO05D007128 1.5e-24 117.1 186 39.2
CSS0017580 Camellia sinensis var. sinensis HOM05D005897 ORTHO05D007128 2.0e-24 116.7 191 40.8
Manes.03G043500 Manihot esculenta HOM05D005897 ORTHO05D007128 2.0e-24 116.7 190 42.6
Aa31LG4G13050 Aethionema arabicum HOM05D005897 ORTHO05D007128 2.6e-24 116.3 188 43.6
BcaC03g13798 Brassica carinata HOM05D005897 ORTHO05D007128 2.6e-24 116.3 187 40.1
BolC2t07071H Brassica oleracea HOM05D005897 ORTHO05D007128 2.6e-24 116.3 187 40.1
BcaC04g19466 Brassica carinata HOM05D005897 ORTHO05D007128 3.3e-24 115.9 192 40.6
BcaB05g22814 Brassica carinata HOM05D005897 ORTHO05D007128 4.4e-24 115.5 182 41.8
C09p55420 Brassica napus HOM05D005897 ORTHO05D007128 5.7e-24 115.2 192 40.6
BolC9t58404H Brassica oleracea HOM05D005897 ORTHO05D007128 5.7e-24 115.2 192 40.6
Oeu055332.1 Olea europaea HOM05D005897 ORTHO05D007128 5.7e-24 115.2 204 40.7
Gorai.001G017300 Gossypium raimondii HOM05D005897 ORTHO05D007128 1.3e-23 114.0 194 41.2
Phvul.009G224300 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 1.7e-23 113.6 182 41.2
AL5G21230 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 2.8e-23 112.8 179 40.2
Ciclev10024151m.g Citrus clementina HOM05D005897 ORTHO05D007128 2.8e-23 112.8 181 38.1
Gohir.D07G016500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 3.7e-23 112.5 188 43.1
TPR.G4016 Trifolium pratense HOM05D005897 ORTHO05D007128 3.7e-23 112.5 191 38.2
Nitab4.5_0001699g0070 Nicotiana tabacum HOM05D005897 ORTHO05D007128 4.8e-23 112.1 196 38.3
SalBow6G0024 Salvia bowleyana HOM05D005897 ORTHO05D007128 1.1e-22 110.9 190 38.4
AL6G32310 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 1.4e-22 110.5 214 37.4
TAR624G1366 Trochodendron aralioides HOM05D005897 ORTHO05D007128 2.4e-22 109.8 188 42.0
AT3G43110 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 3.1e-22 109.4 181 40.9
CARHR192060 Cardamine hirsuta HOM05D005897 ORTHO05D007128 4.1e-22 109.0 191 41.4
Glyma.15G181800 Glycine max HOM05D005897 ORTHO05D007128 4.1e-22 109.0 185 41.6
Oeu010835.1 Olea europaea HOM05D005897 ORTHO05D007128 4.1e-22 109.0 185 42.7
Sp5g18750 Schrenkiella parvula HOM05D005897 ORTHO05D007128 4.1e-22 109.0 186 41.4
BcaB01g04771 Brassica carinata HOM05D005897 ORTHO05D007128 5.3e-22 108.6 189 39.7
Gohir.A07G016700 Gossypium hirsutum HOM05D005897 ORTHO05D007128 5.3e-22 108.6 186 41.4
Lj4g0017959 Lotus japonicus HOM05D005897 ORTHO05D007128 5.3e-22 108.6 189 42.9
Medtr2g043710 Medicago truncatula HOM05D005897 ORTHO05D007128 1.6e-21 107.1 192 38.5
THA.LOC104799609 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 1.6e-21 107.1 215 35.3
Cpa.g.sc1772.1 Carica papaya HOM05D005897 ORTHO05D007128 2.6e-21 106.3 185 38.9
Oeu055333.1 Olea europaea HOM05D005897 ORTHO05D007128 2.6e-21 106.3 199 41.2
VMungo1215G2819 Vigna mungo HOM05D005897 ORTHO05D007128 3.5e-21 105.9 178 42.1
CARHR152530 Cardamine hirsuta HOM05D005897 ORTHO05D007128 4.5e-21 105.5 187 38.5
Psat4g067280 Pisum sativum HOM05D005897 ORTHO05D007128 1.0e-20 104.4 187 40.1
Ca_05224_v3 Cicer arietinum L. HOM05D005897 ORTHO05D007128 2.2e-20 103.2 200 37.5
Glyma.13G113000 Glycine max HOM05D005897 ORTHO05D007128 3.8e-20 102.4 180 39.4
Nitab4.5_0000400g0090 Nicotiana tabacum HOM05D005897 ORTHO05D007128 3.8e-20 102.4 219 37.9
Potri.006G137700 Populus trichocarpa HOM05D005897 ORTHO05D007128 5.0e-20 102.1 191 40.3
Psat1g137480 Pisum sativum HOM05D005897 ORTHO05D007128 6.5e-20 101.7 196 37.2
Carub.0005s0898 Capsella rubella HOM05D005897 ORTHO05D007128 8.5e-20 101.3 185 36.8
Atru.chr7.1754 Acer truncatum HOM05D005897 ORTHO05D007128 1.9e-19 100.1 195 36.9
Rhsim03G0226100 Rhododendron simsii HOM05D005897 ORTHO05D007128 2.5e-19 99.8 182 39.0
THA.LOC104811289 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 2.5e-19 99.8 199 38.7
Actinidia39626 Actinidia chinensis HOM05D005897 ORTHO05D007128 4.2e-19 99.0 179 40.2
Eucgr.C03289 Eucalyptus grandis HOM05D005897 ORTHO05D007128 7.2e-19 98.2 190 37.9
Rhsim05G0003600 Rhododendron simsii HOM05D005897 ORTHO05D007128 1.2e-18 97.4 183 38.3
Medtr4g124850 Medicago truncatula HOM05D005897 ORTHO05D007128 2.1e-18 96.7 193 38.9
Phvul.003G128400 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 2.1e-18 96.7 178 39.9
Nitab4.5_0001092g0030 Nicotiana tabacum HOM05D005897 ORTHO05D007128 3.6e-18 95.9 214 37.4
Thhalv10002680m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 4.7e-18 95.5 191 38.2
Nn8g38553 Nelumbo nucifera HOM05D005897 ORTHO05D007128 4.7e-18 95.5 208 32.7
Migut.J00894 Erythranthe guttata HOM05D005897 ORTHO05D007128 6.1e-18 95.1 188 36.7
Peaxi162Scf00191g00103 Petunia axillaris HOM05D005897 ORTHO05D007128 6.1e-18 95.1 199 35.7
Glyma.09G073050 Glycine max HOM05D005897 ORTHO05D007128 8.0e-18 94.7 183 35.5
SGA_v2.0_scaffold21G09544 Striga asiatica HOM05D005897 ORTHO05D007128 1.0e-17 94.4 185 36.2
Nn6g35653 Nelumbo nucifera HOM05D005897 ORTHO05D007128 5.2e-17 92.0 209 34.9
MSTRG.19434 Avicennia marina HOM05D005897 ORTHO05D007128 6.7e-17 91.7 187 34.2
unitig_22.g5071 Utricularia gibba HOM05D005897 ORTHO05D007128 6.7e-17 91.7 194 37.1
TAR383G0419 Trochodendron aralioides HOM05D005897 ORTHO05D007128 8.8e-17 91.3 194 36.6
Lsat_1_v5_gn_5_139320 Lactuca sativa HOM05D005897 ORTHO05D007128 7.5e-16 88.2 205 34.1
Sopen07g022000 Solanum pennellii HOM05D000392 ORTHO05D002065 7.5e-16 88.2 189 35.4
Glyma.17G046700 Glycine max HOM05D005897 ORTHO05D007128 2.2e-15 86.7 176 37.5
arahy.Tifrunner.gnm1.ann1.K6A74J Arachis hypogaea HOM05D005897 ORTHO05D007128 1.8e-14 83.6 184 38.6
Migut.L01590 Erythranthe guttata HOM05D005897 ORTHO05D007128 1.8e-14 83.6 188 34.6
PGR142G3671 Punica granatum HOM05D005897 ORTHO05D007128 4.5e-13 79.0 198 32.3
TPR.G11456 Trifolium pratense HOM05D005897 ORTHO05D007128 4.5e-13 79.0 194 36.6
Lalb_Chr11g0074041 Lupinus albus HOM05D005897 ORTHO05D007128 2.2e-12 76.6 179 38.5
Lalb_Chr23g0276271 Lupinus albus HOM05D005897 ORTHO05D007128 1.9e-11 73.6 186 32.3
AUR62028279 Chenopodium quinoa HOM05D005897 ORTHO05D007128 9.4e-11 71.2 185 32.4
PGSC0003DMG400013552 Solanum tuberosum HOM05D005897 ORTHO05D007128 2.7e-10 69.7 176 32.4
Actinidia29946 Actinidia chinensis HOM05D005897 ORTHO05D007128 6.8e-09 65.1 189 28.6
Actinidia38489 Actinidia chinensis HOM05D005897 ORTHO05D007128 6.8e-09 65.1 111 42.3
Dinv25518 Davidia involucrata HOM05D005897 ORTHO05D007128 1.3e-07 60.8 87 46.0
vmacro15871 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 3.7e-07 59.3 41 63.4
PSO448G0001 Papaver somniferum HOM05D005897 ORTHO05D007128 4.1e-06 55.8 191 30.9


User provided reference genes

Program Settings