Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 1.4e-159 566.2 295 100.0
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.7e-134 481.5 285 90.2
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.8e-133 479.6 282 90.1
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.8e-133 479.6 280 88.2
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.0e-132 476.1 284 88.7
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.0e-132 476.1 284 88.7
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.2e-131 472.6 280 89.6
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 2.9e-91 339.3 212 87.7
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 6.8e-85 318.2 251 64.5
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 4.9e-83 312.0 283 58.3
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 6.4e-83 311.6 212 72.2
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 1.4e-82 310.5 278 58.3
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 1.5e-79 300.4 283 56.9
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 4.3e-79 298.9 196 69.9
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 1.2e-78 297.4 203 71.9
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 1.1e-77 294.3 288 57.6
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 1.4e-77 293.9 195 72.3
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 5.3e-77 292.0 235 65.5
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 9.0e-77 291.2 217 69.6
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 2.0e-76 290.0 252 59.9
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.7e-75 287.0 230 64.8
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 2.2e-75 286.6 206 67.0
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 3.8e-75 285.8 279 56.6
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 6.4e-75 285.0 196 68.4
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 8.4e-75 284.6 205 68.8
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 1.9e-74 283.5 196 68.4
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 2.7e-73 279.6 288 53.5
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 2.7e-73 279.6 205 66.3
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 2.7e-73 279.6 205 66.3
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 1.7e-72 276.9 192 68.8
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.7e-72 276.9 214 64.5
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 2.3e-72 276.6 232 61.2
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 3.0e-72 276.2 197 66.0
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 3.9e-72 275.8 198 66.7
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 3.9e-72 275.8 211 67.8
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 8.7e-72 274.6 203 66.0
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 8.7e-72 274.6 216 64.8
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 1.1e-71 274.2 197 67.0
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 7.3e-71 271.6 231 59.7
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 2.1e-70 270.0 192 69.3
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 2.1e-70 270.0 205 63.4
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 8.1e-70 268.1 205 63.9
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 1.4e-69 267.3 235 56.6
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 1.4e-69 267.3 192 67.2
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 1.8e-69 266.9 255 56.1
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 1.8e-69 266.9 198 64.6
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 1.8e-69 266.9 200 68.0
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 1.8e-69 266.9 217 73.3
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 6.9e-69 265.0 191 67.0
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 3.4e-68 262.7 212 62.3
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 7.6e-68 261.5 280 53.2
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 9.9e-68 261.2 229 57.6
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 1.7e-67 260.4 241 58.1
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 2.9e-67 259.6 196 67.9
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 6.4e-67 258.5 295 51.2
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 1.1e-66 257.7 206 62.6
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 1.4e-66 257.3 204 65.2
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 1.4e-66 257.3 194 63.4
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 1.9e-66 256.9 210 62.4
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 2.4e-66 256.5 197 65.0
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 2.4e-66 256.5 199 64.8
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 3.2e-66 256.1 214 60.3
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 4.2e-66 255.8 199 65.3
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 5.4e-66 255.4 193 63.2
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 7.1e-66 255.0 212 60.8
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 1.2e-65 254.2 197 64.5
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 1.6e-65 253.8 197 64.5
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 1.6e-65 253.8 197 64.5
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 1.6e-65 253.8 197 64.5
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 2.1e-65 253.4 197 64.5
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 3.0e-64 249.6 199 63.8
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 8.7e-64 248.1 196 63.3
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 1.1e-63 247.7 197 62.9
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 1.5e-63 247.3 196 63.3
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 1.9e-63 246.9 196 63.8
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 2.5e-63 246.5 200 60.0
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 2.5e-63 246.5 208 56.7
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 3.3e-63 246.1 196 63.8
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 5.6e-63 245.4 196 63.8
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 5.6e-63 245.4 231 53.7
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 9.6e-63 244.6 186 64.0
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 9.6e-63 244.6 196 63.8
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 1.3e-62 244.2 196 62.8
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 1.6e-62 243.8 206 59.2
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 2.1e-62 243.4 202 60.4
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 7.6e-60 235.0 203 58.1
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 1.1e-58 231.1 215 55.8
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 1.9e-58 230.3 156 70.5
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 1.9e-58 230.3 211 58.3
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.5e-58 229.9 216 57.4
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 4.6e-57 225.7 182 64.8
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 1.8e-56 223.8 194 58.2
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.3e-56 223.4 200 56.5
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 1.1e-55 221.1 191 58.6
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 1.2e-52 211.1 194 53.1
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 2.9e-51 206.5 144 66.0
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 6.5e-51 205.3 186 51.6
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 2.5e-50 203.4 188 52.1
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 3.2e-50 203.0 193 53.9
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 6.1e-49 198.7 146 63.7
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 7.9e-49 198.4 200 52.5
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 5.1e-48 195.7 192 54.2
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 3.6e-41 172.9 181 48.1
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 7.4e-39 165.2 127 65.4
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 1.8e-37 160.6 181 48.6
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 1.8e-37 160.6 154 62.3
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 5.5e-34 149.1 169 48.5
AUR62004580 Chenopodium quinoa HOM05D006270 ORTHO05D007755 7.2e-34 148.7 110 65.5
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 4.7e-33 146.0 140 56.4
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 1.0e-32 144.8 151 53.0
SEGI_10565 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 9.7e-31 138.3 133 55.6
SEGI_32338 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 3.1e-29 133.3 117 60.7
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 8.5e-27 125.2 186 37.1
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 3.6e-25 119.8 140 47.9
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 4.7e-25 119.4 141 48.9
Nitab4.5_0000329g0020 Nicotiana tabacum HOM05D006270 ORTHO05D007755 4.4e-23 112.8 129 49.6
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 1.1e-21 108.2 70 74.3
CBR_g50390 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-21 107.1 118 42.4
SEGI_00952 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 2.6e-20 103.6 113 52.2
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 1.9e-18 97.4 216 30.6
SEGI_26224 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 1.5e-15 87.8 97 53.6
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.7e-11 74.3 46 73.9
MCO03G108 Micromonas commoda HOM05D006270 ORTHO05D007755 1.9e-10 70.9 181 33.1


User provided reference genes

Program Settings