Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0377081 Rosa chinensis HOM05D002077 ORTHO05D000818 1.5e-62 242.7 120 100.0
FAN10G2215 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.7e-40 167.9 119 70.6
FvH4_7g29321 Fragaria vesca HOM05D002077 ORTHO05D000818 1.4e-39 166.4 119 70.6
FAN03G1381 Fragaria x ananassa HOM05D002077 ORTHO05D000818 2.6e-38 162.2 119 70.6
RcHm_v2.0_Chr1g0377061 Rosa chinensis HOM05D002077 ORTHO05D000818 1.5e-35 152.9 118 64.4
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 1.0e-31 140.2 119 58.8
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.0e-31 140.2 119 58.8
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 1.0e-31 140.2 119 58.8
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.3e-31 139.0 119 58.8
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 3.0e-31 138.7 118 58.5
MD01G1199600 Malus domestica HOM05D002077 ORTHO05D000818 3.9e-31 138.3 118 57.6
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 5.2e-31 137.9 118 58.5
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 6.7e-31 137.5 118 57.6
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 1.1e-30 136.7 119 57.1
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.5e-30 136.3 118 57.6
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 4.4e-30 134.8 118 57.6
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 9.7e-30 133.7 118 56.8
Haze_13726 Corylus avellana HOM05D002077 ORTHO05D000818 1.3e-29 133.3 118 57.6
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 1.7e-29 132.9 118 56.8
Dinv35206 Davidia involucrata HOM05D002077 ORTHO05D000818 1.7e-29 132.9 118 55.9
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 2.8e-29 132.1 119 58.0
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 2.8e-29 132.1 119 56.3
Cfa008309 Carpinus fangiana HOM05D002077 ORTHO05D000818 6.3e-29 131.0 118 56.8
CSS0046422 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.1e-28 130.2 118 55.9
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 1.8e-28 129.4 118 54.2
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 2.4e-28 129.0 118 55.1
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 3.1e-28 128.6 119 54.6
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 5.3e-28 127.9 118 55.1
Oeu021781.1 Olea europaea HOM05D002077 ORTHO05D000818 5.3e-28 127.9 118 56.8
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 7.0e-28 127.5 118 54.2
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 7.0e-28 127.5 118 54.2
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 7.0e-28 127.5 118 54.2
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 1.2e-27 126.7 119 53.8
MD07G1267400 Malus domestica HOM05D002077 ORTHO05D000818 1.2e-27 126.7 118 57.6
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 1.2e-27 126.7 119 53.8
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 1.6e-27 126.3 118 55.1
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.6e-27 126.3 118 55.1
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 2.0e-27 125.9 118 54.2
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 2.0e-27 125.9 118 53.4
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 2.6e-27 125.6 118 54.2
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 3.5e-27 125.2 118 54.2
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 4.5e-27 124.8 119 52.1
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 4.5e-27 124.8 118 55.1
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 5.9e-27 124.4 118 53.4
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 5.9e-27 124.4 118 55.1
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 5.9e-27 124.4 118 51.7
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 7.7e-27 124.0 118 54.2
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 7.7e-27 124.0 118 54.2
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 7.7e-27 124.0 118 51.7
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 7.7e-27 124.0 118 51.7
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 1.0e-26 123.6 119 50.4
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.3e-26 123.2 118 54.2
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 1.3e-26 123.2 118 51.7
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 1.7e-26 122.9 119 52.9
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 1.7e-26 122.9 119 52.9
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.7e-26 122.9 119 52.9
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 1.7e-26 122.9 118 53.4
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 1.7e-26 122.9 119 52.9
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.7e-26 122.9 118 52.5
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 1.7e-26 122.9 118 52.5
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 2.2e-26 122.5 117 53.8
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.9e-26 122.1 118 52.5
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 3.8e-26 121.7 118 54.2
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 3.8e-26 121.7 118 51.7
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 3.8e-26 121.7 117 53.8
A06p18870 Brassica napus HOM05D002077 ORTHO05D000818 5.0e-26 121.3 119 52.9
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 5.0e-26 121.3 118 52.5
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 6.5e-26 120.9 119 52.1
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 6.5e-26 120.9 119 51.3
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 6.5e-26 120.9 119 51.3
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 6.5e-26 120.9 119 51.3
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 6.5e-26 120.9 119 51.3
Prupe.2G293100 Prunus persica HOM05D002077 ORTHO05D000818 6.5e-26 120.9 119 52.1
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 1.1e-25 120.2 119 51.3
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 1.1e-25 120.2 119 52.1
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 1.1e-25 120.2 119 52.1
BolC8t50011H Brassica oleracea HOM05D002077 ORTHO05D000818 1.1e-25 120.2 119 52.1
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 1.5e-25 119.8 119 50.4
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 1.9e-25 119.4 118 50.8
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 2.5e-25 119.0 118 52.5
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 2.5e-25 119.0 118 54.2
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 3.2e-25 118.6 118 51.7
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 5.5e-25 117.9 118 50.0
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 9.4e-25 117.1 118 50.0
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 2.1e-24 115.9 118 50.0
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 2.7e-24 115.5 119 49.6
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 4.7e-24 114.8 118 51.7
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 6.1e-24 114.4 118 50.0
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 1.0e-23 113.6 118 51.7
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 1.4e-23 113.2 118 50.0
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 2.3e-23 112.5 118 51.7
FAN10G4305 Fragaria x ananassa HOM05D002077 ORTHO05D000818 5.2e-23 111.3 119 49.6
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 6.7e-23 110.9 118 49.2
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 6.7e-23 110.9 118 50.8
BcaB01g00773 Brassica carinata HOM05D002077 ORTHO05D000818 8.8e-23 110.5 117 51.3
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 1.5e-22 109.8 118 50.8
FvH4_7g29340 Fragaria vesca HOM05D002077 ORTHO05D000818 2.0e-22 109.4 119 48.7
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 2.6e-22 109.0 118 46.6
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 4.4e-22 108.2 116 49.1
HPP92_008435 Vanilla planifolia HOM05D002077 ORTHO05D000818 4.4e-22 108.2 118 44.9
HPP92_008461 Vanilla planifolia HOM05D002077 ORTHO05D000818 4.4e-22 108.2 118 44.9
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 7.5e-22 107.5 118 50.8
TPR.G14336 Trifolium pratense HOM05D002077 ORTHO05D000818 1.7e-21 106.3 119 47.1
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.2e-21 105.9 118 44.9
RcHm_v2.0_Chr1g0377091 Rosa chinensis HOM05D002077 ORTHO05D000818 2.8e-21 105.5 119 48.7
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 2.8e-21 105.5 116 47.4
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 2.8e-21 105.5 116 47.4
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 2.8e-21 105.5 116 46.6
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 2.8e-21 105.5 118 49.2
FAN03G0915 Fragaria x ananassa HOM05D002077 ORTHO05D000818 6.3e-21 104.4 119 46.2
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 6.3e-21 104.4 118 49.2
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 8.3e-21 104.0 118 44.1
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 8.3e-21 104.0 118 44.1
CAN.G1154.4 Capsicum annuum HOM05D002077 ORTHO05D000818 1.1e-20 103.6 118 48.3
PGSC0003DMG402014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.1e-20 103.6 100 53.0
Psat7g237160 Pisum sativum HOM05D002077 ORTHO05D000818 1.4e-20 103.2 119 47.1
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.4e-20 103.2 116 47.4
Medtr4g099030 Medicago truncatula HOM05D002077 ORTHO05D000818 1.8e-20 102.8 119 45.4
PGR042G3255 Punica granatum HOM05D002077 ORTHO05D000818 1.8e-20 102.8 118 46.6
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 5.3e-20 101.3 118 45.8
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 5.3e-20 101.3 118 45.8
Zm00001eb044180 Zea mays HOM05D002077 ORTHO05D000818 7.0e-20 100.9 118 43.2
Psat7g237200 Pisum sativum HOM05D002077 ORTHO05D000818 9.1e-20 100.5 119 46.2
Medtr1g100713 Medicago truncatula HOM05D002077 ORTHO05D000818 2.0e-19 99.4 119 46.2
Sp2g23500 Schrenkiella parvula HOM05D002077 ORTHO05D000818 3.5e-19 98.6 119 46.2
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.7e-18 96.3 118 44.1
Medtr0013s0100 Medicago truncatula HOM05D002077 ORTHO05D000818 1.7e-18 96.3 119 44.5
TPR.G34129 Trifolium pratense HOM05D002077 ORTHO05D000818 1.7e-18 96.3 119 43.7
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 5.0e-18 94.7 118 43.2
Thhalv10005418m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.9e-17 92.8 119 42.0
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 1.9e-17 92.8 118 43.2
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 3.2e-17 92.0 82 58.5
Thhalv10016006m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 7.2e-17 90.9 119 43.7
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 2.7e-16 89.0 108 42.6
Thhalv10005421m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 3.0e-15 85.5 120 44.2
Thhalv10015508m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.6e-14 82.4 119 39.5
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 2.6e-14 82.4 119 39.5
CARHR189810 Cardamine hirsuta HOM05D002077 ORTHO05D000818 1.4e-12 76.6 100 43.0
QL08p016914 Quercus lobata HOM05D002077 ORTHO05D000818 1.3e-10 70.1 91 44.0
Aqoxy7G01052 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 1.7e-10 69.7 91 44.0
QL08p017090 Quercus lobata HOM05D002077 ORTHO05D000818 2.9e-10 68.9 105 39.0
MD09G1057300 Malus domestica HOM05D002077 ORTHO05D000818 2.5e-09 65.9 58 56.9
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 1.6e-08 63.2 112 33.0
FAN03G0065 Fragaria x ananassa HOM05D002077 ORTHO05D000818 4.7e-08 61.6 69 49.3
CSS0043009 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.0e-07 60.5 119 30.3
Thhalv10015605m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.4e-07 60.1 78 41.0
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.8e-07 59.7 94 33.0
PGSC0003DMG400043692 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.8e-07 59.7 61 52.5
Medtr7g074410 Medicago truncatula HOM05D002077 ORTHO05D000818 2.3e-07 59.3 117 35.0
Manes.02G024600 Manihot esculenta HOM05D002077 ORTHO05D000818 4.0e-07 58.5 88 40.9
Medtr7g075970 Medicago truncatula HOM05D002077 ORTHO05D000818 8.9e-07 57.4 108 35.2
Solyc01g150123.1 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.5e-06 56.6 56 50.0
TPR.G14717 Trifolium pratense HOM05D002077 ORTHO05D000818 2.0e-06 56.2 108 34.3
Glyma.01G100400 Glycine max HOM05D002077 ORTHO05D000818 2.6e-06 55.8 92 41.3
Glyma.02G057300 Glycine max HOM05D002077 ORTHO05D000818 3.4e-06 55.5 92 41.3
Medtr7g074430 Medicago truncatula HOM05D002077 ORTHO05D000818 3.4e-06 55.5 96 36.5
Ciclev10021301m.g Citrus clementina HOM05D002077 ORTHO05D000818 4.4e-06 55.1 91 38.5
Solyc03g026410.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 5.7e-06 54.7 61 44.3
Glyma.16G140400 Glycine max HOM05D002077 ORTHO05D000818 9.8e-06 53.9 100 35.0


User provided reference genes

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