Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 5.6e-101 370.9 186 100.0
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 1.4e-99 366.3 186 97.8
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-99 366.3 186 97.8
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.8e-99 365.9 186 97.8
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 6.2e-84 314.3 186 82.8
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.3e-81 306.6 186 80.1
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 1.9e-80 302.8 186 78.5
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 4.2e-80 301.6 186 78.0
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 6.7e-78 294.3 149 96.0
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 4.5e-74 281.6 186 74.2
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 5.8e-74 281.2 186 74.7
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.3e-73 280.0 185 73.0
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 2.9e-73 278.9 186 71.5
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 3.2e-72 275.4 187 74.3
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 6.0e-71 271.2 186 68.8
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.8e-70 269.6 187 70.6
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.0e-70 268.9 186 69.4
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.0e-70 268.9 192 69.3
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 5.1e-70 268.1 186 72.0
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.5e-69 266.5 186 68.3
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 71.0
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 71.0
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.9e-69 266.2 186 71.0
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 2.5e-69 265.8 186 68.3
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 4.3e-69 265.0 186 71.5
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 4.3e-69 265.0 186 68.8
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 7.4e-69 264.2 186 67.2
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 7.4e-69 264.2 187 68.4
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 9.7e-69 263.8 184 70.1
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.3e-68 263.5 186 67.2
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.6e-68 263.1 186 70.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.6e-68 263.1 182 71.4
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 1.6e-68 263.1 186 68.8
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.6e-68 263.1 187 69.5
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 2.8e-68 262.3 187 69.0
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 4.8e-68 261.5 186 69.9
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 4.8e-68 261.5 183 68.3
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.2e-68 260.8 187 69.0
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 8.2e-68 260.8 186 69.9
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 2.4e-67 259.2 186 67.2
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 6.9e-67 257.7 186 68.3
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 6.9e-67 257.7 184 67.9
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 6.9e-67 257.7 187 68.4
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.5e-66 256.5 187 69.5
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 2.0e-66 256.1 186 68.3
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.6e-66 255.8 186 66.7
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 5.9e-66 254.6 186 67.7
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.9e-66 254.6 186 69.4
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 7.7e-66 254.2 184 67.4
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.3e-65 253.4 186 66.7
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 1.3e-65 253.4 184 67.9
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.7e-65 253.1 183 67.8
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.2e-65 252.7 187 66.8
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 2.2e-65 252.7 184 66.8
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 2.9e-65 252.3 186 68.8
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 3.8e-65 251.9 186 68.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.0e-65 251.5 186 68.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 5.0e-65 251.5 182 67.0
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 6.5e-65 251.1 186 66.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 6.5e-65 251.1 186 66.7
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.5e-65 250.8 187 65.8
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.4e-64 250.0 186 66.7
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.4e-64 250.0 186 66.7
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.4e-64 250.0 186 66.1
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 4.2e-64 248.4 178 68.5
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 1.6e-63 246.5 186 64.5
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.1e-63 246.1 187 67.4
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 6.1e-63 244.6 171 69.6
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.4e-62 243.4 149 82.6
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 2.3e-62 242.7 184 65.2
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 2.3e-62 242.7 181 66.3
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 2.3e-62 242.7 184 65.2
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.3e-62 242.7 183 67.8
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 3.9e-62 241.9 184 63.6
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 6.7e-62 241.1 182 65.9
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 6.7e-62 241.1 182 64.3
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 2.0e-61 239.6 182 65.4
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 2.5e-61 239.2 187 65.8
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 7.4e-61 237.7 182 63.7
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 9.7e-61 237.3 187 64.2
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.3e-60 236.9 187 65.2
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 63.2
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 2.2e-60 236.1 182 63.7
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.2e-60 236.1 207 58.0
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.8e-60 235.7 185 64.9
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 3.7e-60 235.3 181 64.6
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 6.3e-60 234.6 182 63.7
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 1.4e-59 233.4 181 64.6
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 1.4e-59 233.4 181 64.6
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.1e-59 230.7 168 67.3
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.6e-58 229.2 187 63.1
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 7.7e-58 227.6 187 61.5
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 3.8e-57 225.3 186 64.0
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 6.5e-57 224.6 189 63.0
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.1e-56 223.8 189 61.4
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 1.1e-56 223.8 189 62.4
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 1.1e-56 223.8 189 62.4
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 4.2e-56 221.9 183 59.6
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 5.5e-56 221.5 189 61.4
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 5.5e-56 221.5 189 61.4
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 9.4e-56 220.7 185 61.6
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.6e-55 219.9 187 59.9
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 1.0e-54 217.2 185 59.5
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 2.3e-54 216.1 183 59.6
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 8.8e-54 214.2 166 64.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 8.8e-54 214.2 183 59.0
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 2.0e-53 213.0 185 58.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 3.3e-53 212.2 148 69.6
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 6.3e-52 208.0 185 56.8
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.1e-51 207.2 185 57.3
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 1.4e-51 206.8 200 59.5
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 8.5e-49 197.6 188 58.5
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.4e-48 196.8 183 56.8
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 5.5e-48 194.9 183 52.5
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 5.5e-48 194.9 202 56.4
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.8e-46 189.9 183 50.8
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 3.0e-46 189.1 166 60.2
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.2e-46 188.3 175 58.3
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 5.2e-46 188.3 149 61.1
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 2.6e-45 186.0 150 63.3
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 9.7e-45 184.1 182 50.0
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 3.7e-44 182.2 186 57.0
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 2.2e-41 172.9 187 52.9
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 4.2e-40 168.7 170 55.9
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.2e-39 167.2 183 47.5
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.6e-39 166.8 183 47.5
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.1e-39 166.4 187 43.3
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 2.7e-34 149.4 103 67.0
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.9e-33 146.0 113 59.3
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 9.1e-27 124.4 167 43.1
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.3e-25 119.8 117 53.8
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 8.9e-22 107.8 104 51.9
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 4.4e-21 105.5 167 36.5
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 6.3e-20 101.7 98 58.2
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 1.4e-19 100.5 71 64.8
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.4e-19 100.5 89 57.3
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 4.5e-18 95.5 190 30.5
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 5.0e-17 92.0 83 65.1
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 5.6e-16 88.6 62 62.9
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.4e-14 84.0 72 52.8
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 4.9e-12 75.5 174 28.2
PRCOL_00002083 Prasinoderma coloniale HOM05D005619 ORTHO05D006696 1.7e-09 67.0 142 31.7
QL03p009034 Quercus lobata HOM05D000946 ORTHO05D006696 3.1e-06 56.2 35 62.9


User provided reference genes

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