Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0346721 Rosa chinensis HOM05D005012 ORTHO05D005886 5.5e-69 264.2 138 100.0
RcHm_v2.0_Chr7g0222641 Rosa chinensis HOM05D005012 ORTHO05D005886 3.2e-61 238.4 138 89.9
RcHm_v2.0_Chr7g0220741 Rosa chinensis HOM05D005012 ORTHO05D005886 7.4e-50 200.7 122 84.4
RcHm_v2.0_Chr2g0138651 Rosa chinensis HOM05D005012 ORTHO05D005886 6.8e-35 151.0 85 89.4
RcHm_v2.0_Chr4g0416921 Rosa chinensis HOM05D005012 ORTHO05D005886 2.9e-22 109.0 56 92.9
RcHm_v2.0_Chr6g0273901 Rosa chinensis HOM05D005012 ORTHO05D005886 8.9e-19 97.4 101 51.5
FvH4_6g37930 Fragaria vesca HOM05D005012 ORTHO05D005886 3.5e-15 85.5 105 42.9
FAN08G1587 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.5e-15 85.5 102 44.1
RcHm_v2.0_Chr3g0475981 Rosa chinensis HOM05D005012 ORTHO05D005886 1.0e-14 84.0 65 56.9
FAN11G2763 Fragaria x ananassa HOM05D005012 ORTHO05D008319 1.3e-14 83.6 110 40.0
FvH4_3g22860 Fragaria vesca HOM05D005012 ORTHO05D005886 1.5e-13 80.1 110 39.1
FAN17G1574 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.2e-11 71.6 65 44.6
FvH4_6g21851 Fragaria vesca HOM05D005012 ORTHO05D005886 1.2e-10 70.5 127 40.2
FAN10G0147 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.4e-10 68.9 127 40.2
FAN05G1721 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.5e-10 67.8 115 35.7
FAN26G2139 Fragaria x ananassa HOM05D005012 ORTHO05D005886 9.8e-10 67.4 121 40.5
FAN20G1519 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.3e-09 67.0 120 39.2
FAN19G1173 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.2e-09 66.2 135 38.5
FvH4_1g28181 Fragaria vesca HOM05D005012 ORTHO05D005886 2.9e-09 65.9 127 39.4
FAN16G2301 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.9e-09 65.9 120 39.2
FAN16G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.9e-09 65.9 134 39.6
CSS0016088 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 3.7e-09 65.5 134 36.6
FvH4_5g37421 Fragaria vesca HOM05D005012 ORTHO05D005886 4.9e-09 65.1 127 39.4
FvH4_6g38710 Fragaria vesca HOM05D008209 ORTHO05D010322 4.9e-09 65.1 59 45.8
FvH4_1g29802 Fragaria vesca HOM05D005012 ORTHO05D005886 6.4e-09 64.7 127 38.6
CSS0007522 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 8.3e-09 64.3 105 39.0
CSS0040160 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 8.3e-09 64.3 105 39.0
CSS0018539 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.1e-08 63.9 105 39.0
CSS0044969 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.1e-08 63.9 105 39.0
FAN04G0958 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-08 63.5 100 37.0
FAN14G0420 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-08 63.5 59 44.1
CSS0008214 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.9e-08 63.2 105 39.0
FAN04G2305 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.4e-08 62.8 127 37.0
FAN15G1928 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.4e-08 62.8 122 36.9
FAN19G1169 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.2e-08 62.4 125 38.4
CSS0005185 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.1e-08 62.0 132 34.8
CSS0042015 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.1e-08 62.0 132 34.8
CSS0001339 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.4e-08 61.6 105 38.1
RcHm_v2.0_Chr6g0281481 Rosa chinensis HOM05D005012 ORTHO05D050742 7.1e-08 61.2 92 43.5
CSS0046119 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.6e-07 60.1 123 38.2
RcHm_v2.0_Chr5g0068021 Rosa chinensis HOM05D005012 ORTHO05D050742 1.6e-07 60.1 92 43.5
FAN04G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.1e-07 59.7 103 33.0
FAN04G2098 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.6e-07 58.5 100 35.0
FAN04G2636 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.6e-07 58.5 103 33.0
FAN15G1881 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.6e-07 58.5 103 33.0
FAN25G0106 Fragaria x ananassa HOM05D005012 ORTHO05D005886 4.6e-07 58.5 103 33.0
CSS0046965 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 7.8e-07 57.8 109 35.8
FAN04G0818 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.8e-07 57.8 124 31.5
FAN06G3934 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.8e-07 57.8 124 31.5
FAN08G2726 Fragaria x ananassa HOM05D005012 ORTHO05D005886 7.8e-07 57.8 124 31.5
Rhsim09G0115800 Rhododendron simsii HOM05D005012 ORTHO05D005886 7.8e-07 57.8 121 34.7
TWI79G1319 Tripterygium wilfordii HOM05D000107 ORTHO05D000062 7.8e-07 57.8 106 34.0
Rhsim05G0112900 Rhododendron simsii HOM05D005012 ORTHO05D005886 1.0e-06 57.4 121 34.7
CSS0021882 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 1.7e-06 56.6 112 37.5
FAN26G1690 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.7e-06 56.6 104 35.6
CSS0010423 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 2.3e-06 56.2 105 35.2
CSS0004182 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 5.1e-06 55.1 134 32.8
FAN13G1160 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.1e-06 55.1 92 32.6
Rhsim07G0133200 Rhododendron simsii HOM05D005012 ORTHO05D005886 8.6e-06 54.3 120 31.7


User provided reference genes

Program Settings