Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-55 219.5 115 100.0
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 9.3e-54 213.4 115 96.5
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 9.3e-54 213.4 115 96.5
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.3e-54 213.4 115 96.5
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.3e-54 213.4 115 96.5
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.6e-50 202.6 115 90.4
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.6e-50 202.6 115 91.3
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.1e-50 202.2 115 90.4
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 6.9e-49 197.2 146 76.0
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 6.4e-47 190.7 115 86.1
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.9e-46 189.1 114 86.8
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 2.4e-46 188.7 115 85.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.4e-46 188.7 115 85.2
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.1e-45 185.7 115 84.3
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 2.1e-45 185.7 115 84.3
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.7e-45 185.3 115 85.2
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 6.0e-45 184.1 113 85.0
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 7.9e-45 183.7 115 82.6
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.7e-44 182.6 115 84.3
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.7e-44 182.6 115 80.9
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.0e-44 181.8 115 81.7
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 5.1e-44 181.0 115 80.9
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 6.6e-44 180.6 115 80.0
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 6.6e-44 180.6 111 84.7
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 6.6e-44 180.6 115 82.6
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 8.7e-44 180.3 115 83.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 81.7
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 79.1
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.5e-43 179.5 115 80.9
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 80.9
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.3e-43 177.9 115 80.9
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 80.9
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 7.3e-43 177.2 115 80.9
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 7.3e-43 177.2 115 78.3
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 9.6e-43 176.8 115 78.3
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 9.6e-43 176.8 115 78.3
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 1.3e-42 176.4 115 78.3
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.6e-42 176.0 115 80.0
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.8e-42 175.3 115 79.1
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 2.8e-42 175.3 115 78.3
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.8e-42 175.3 115 79.1
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 2.8e-42 175.3 115 77.4
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.6e-42 174.9 115 80.9
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 4.8e-42 174.5 115 77.4
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 6.2e-42 174.1 113 80.5
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 6.2e-42 174.1 113 78.8
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 6.2e-42 174.1 115 78.3
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 6.2e-42 174.1 115 78.3
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 8.1e-42 173.7 115 78.3
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 8.1e-42 173.7 115 78.3
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 8.1e-42 173.7 113 79.6
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.4e-41 172.9 115 77.4
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.4e-41 172.9 115 75.7
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.4e-41 172.9 115 77.4
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.4e-41 172.2 115 76.5
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.1e-41 171.8 115 76.5
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 3.1e-41 171.8 115 76.5
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 80.0
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 4.0e-41 171.4 111 80.2
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 76.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 4.0e-41 171.4 115 80.0
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 5.3e-41 171.0 112 81.2
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 5.3e-41 171.0 113 78.8
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 6.9e-41 170.6 112 80.4
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 6.9e-41 170.6 113 77.0
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.9e-41 170.6 115 74.8
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.9e-41 170.6 115 74.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 9.0e-41 170.2 115 78.3
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 9.0e-41 170.2 115 75.7
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.2e-40 169.9 115 79.1
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.6e-40 168.7 113 76.1
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.6e-40 168.7 115 76.5
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 3.4e-40 168.3 115 75.7
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 5.8e-40 167.5 115 76.5
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 5.8e-40 167.5 113 74.3
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 7.6e-40 167.2 115 74.8
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-39 166.4 115 75.7
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.3e-39 166.4 115 75.7
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 2.2e-39 165.6 113 77.0
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 75.4
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.9e-39 165.2 115 73.0
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 3.8e-39 164.9 115 73.9
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 6.4e-39 164.1 105 82.9
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.4e-39 163.7 115 73.0
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.4e-39 163.7 115 73.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 1.1e-38 163.3 113 71.7
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 75.4
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.9e-38 162.5 113 72.6
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 3.2e-38 161.8 115 71.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 4.2e-38 161.4 109 75.2
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 5.5e-38 161.0 107 77.6
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 9.3e-38 160.2 113 74.3
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 9.3e-38 160.2 145 61.4
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.6e-37 159.5 115 71.3
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 2.1e-37 159.1 115 70.4
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 3.5e-37 158.3 115 71.3
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 3.5e-37 158.3 115 71.3
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 3.5e-37 158.3 115 71.3
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 4.6e-37 157.9 143 63.6
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 6.0e-37 157.5 115 71.3
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 7.9e-37 157.1 115 71.3
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 7.9e-37 157.1 115 70.4
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.3e-36 156.4 115 70.4
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-36 156.0 115 70.4
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 5.1e-36 154.5 113 71.7
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.5e-35 152.9 105 77.1
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 5.6e-35 151.0 113 67.3
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 5.6e-35 151.0 113 69.0
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 4.8e-34 147.9 115 67.8
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.8e-33 146.0 115 65.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 3.1e-33 145.2 80 91.2
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.5e-32 142.9 89 80.9
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.8e-32 141.0 92 80.4
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.9e-31 138.7 115 62.6
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 6.5e-31 137.5 90 78.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 3.2e-30 135.2 115 61.7
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 3.2e-30 135.2 84 79.8
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-29 132.5 101 69.3
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 79.5
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 6.0e-29 131.0 83 79.5
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 6.0e-29 131.0 79 81.0
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 7.9e-29 130.6 65 98.5
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.0e-28 130.2 108 61.1
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.3e-28 129.0 93 76.3
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.0e-25 117.1 68 86.8
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 2.6e-24 115.5 76 80.3
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.2e-23 112.5 113 54.0
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.1e-22 110.2 107 50.5
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.1e-22 110.2 77 68.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 3.2e-22 108.6 115 55.7
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 7.2e-22 107.5 57 98.2
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 7.9e-21 104.0 98 56.1
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.9e-21 104.0 109 47.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.0e-20 102.1 111 52.3
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 8.7e-20 100.5 78 67.9
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.1e-19 100.1 70 75.7
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-18 96.3 78 65.4
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.1e-17 93.6 107 48.6
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-17 92.8 51 90.2
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 3.1e-17 92.0 63 76.2
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.1e-17 91.7 101 54.5
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.2e-16 90.1 50 88.0
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.9e-16 87.8 64 68.8
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 7.7e-16 87.4 51 86.3
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-15 86.7 82 53.7
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 6.5e-15 84.3 76 51.3
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 1.2e-13 80.1 43 90.7
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.1e-13 79.3 45 82.2
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 6.1e-13 77.8 56 75.0
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 1.4e-12 76.6 104 45.2
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.8e-12 76.3 96 47.9
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.9e-12 75.1 76 60.5
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-11 73.2 43 83.7
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 5.7e-11 71.2 96 41.7
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 7.4e-11 70.9 100 48.0
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 2.8e-10 68.9 61 60.7
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.7e-10 68.6 60 58.3
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.8e-10 68.2 93 48.4
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.4e-09 66.6 93 46.2
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 3.1e-09 65.5 98 45.9
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.3e-09 64.7 59 49.2


User provided reference genes

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