Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0336001 Rosa chinensis HOM05D009149 ORTHO05D003639 6.4e-168 594.0 293 100.0
RcHm_v2.0_Chr6g0291271 Rosa chinensis HOM05D009149 ORTHO05D003639 1.4e-151 539.7 269 97.0
RcHm_v2.0_Chr2g0105541 Rosa chinensis HOM05D009149 ORTHO05D003639 9.6e-148 526.9 269 94.8
RcHm_v2.0_Chr1g0350201 Rosa chinensis HOM05D009149 ORTHO05D003639 1.2e-145 520.0 269 93.7
RcHm_v2.0_Chr3g0493631 Rosa chinensis HOM05D009149 ORTHO05D003639 7.2e-127 457.6 269 81.4
RcHm_v2.0_Chr2g0131351 Rosa chinensis HOM05D009149 ORTHO05D003639 9.7e-124 447.2 269 82.2
RcHm_v2.0_Chr7g0194611 Rosa chinensis HOM05D009149 ORTHO05D003639 1.7e-104 383.3 288 64.6
FvH4_4g18552 Fragaria vesca HOM05D009149 ORTHO05D003639 1.2e-102 377.1 276 64.5
RcHm_v2.0_Chr4g0419521 Rosa chinensis HOM05D009149 ORTHO05D003639 2.4e-98 362.8 203 84.7
RcHm_v2.0_Chr2g0133021 Rosa chinensis HOM05D009149 ORTHO05D003639 3.6e-70 269.2 167 76.0
RcHm_v2.0_Chr4g0410321 Rosa chinensis HOM05D009149 ORTHO05D003639 6.8e-61 238.4 176 67.6
RcHm_v2.0_Chr6g0262131 Rosa chinensis HOM05D009149 ORTHO05D003639 2.6e-52 209.9 132 74.2
FvH4_1g21382 Fragaria vesca HOM05D016497 ORTHO05D019154 3.2e-50 203.0 268 40.7
FvH4_1g29795 Fragaria vesca HOM05D009149 ORTHO05D003639 9.3e-50 201.4 259 42.1
RcHm_v2.0_Chr3g0456191 Rosa chinensis HOM05D009149 ORTHO05D003639 3.5e-49 199.5 144 68.1
FvH4_2g35573 Fragaria vesca HOM05D009149 ORTHO05D003639 1.8e-29 134.0 257 33.5
RcHm_v2.0_Chr5g0004321 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-26 124.0 219 33.8
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 9.3e-26 121.7 257 30.0
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 1.6e-25 120.9 262 29.4
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 6.1e-25 119.0 257 30.4
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 7.9e-25 118.6 257 30.0
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 1.3e-24 117.9 167 38.3
RcHm_v2.0_Chr6g0249161 Rosa chinensis HOM05D008702 ORTHO05D003639 2.3e-24 117.1 277 29.2
RcHm_v2.0_Chr2g0121071 Rosa chinensis HOM05D008702 ORTHO05D003639 2.2e-22 110.5 224 29.9
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 4.1e-21 106.3 216 31.9
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 5.3e-21 105.9 216 31.9
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 4.5e-20 102.8 173 31.8
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 4.5e-20 102.8 216 31.9
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 2.9e-19 100.1 179 34.1
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 6.5e-19 99.0 181 33.1
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 5.5e-18 95.9 190 32.6
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.2e-17 94.7 189 33.3
Nitab4.5_0007634g0020 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.7e-17 93.6 229 29.3
Peaxi162Scf00169g00112 Petunia axillaris HOM05D008778 ORTHO05D003639 3.6e-17 93.2 135 37.0
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.4e-16 91.3 178 30.9
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 2.3e-16 90.5 184 31.5
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 2.3e-16 90.5 167 32.3
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 8.8e-16 88.6 184 30.4
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 2.5e-15 87.0 163 31.3
Sopen09g003890 Solanum pennellii HOM05D000006 ORTHO05D000001 2.5e-15 87.0 89 42.7
COL.COLO4_04628 Corchorus olitorius HOM05D015644 ORTHO05D016958 4.3e-15 86.3 181 30.4
Nitab4.5_0006587g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 7.4e-15 85.5 145 33.1
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 9.7e-15 85.1 170 32.4
COL.COLO4_28241 Corchorus olitorius HOM05D015644 ORTHO05D016958 9.7e-15 85.1 181 29.8
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 6.3e-14 82.4 184 31.0
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 5.3e-13 79.3 178 29.2
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 4.5e-12 76.3 181 27.1
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 2.2e-11 73.9 179 27.9
Oeu018520.1 Olea europaea HOM05D007843 ORTHO05D003639 1.6e-09 67.8 188 30.3
Prupe.6G164100 Prunus persica HOM05D008702 ORTHO05D003639 2.7e-09 67.0 121 37.2
Ca_14715_v3 Cicer arietinum L. HOM05D001371 ORTHO05D001319 3.6e-09 66.6 171 29.2
C05p31530 Brassica napus HOM05D001371 ORTHO05D001319 4.7e-09 66.2 182 27.5
BcaC05g27237 Brassica carinata HOM05D001371 ORTHO05D001319 1.0e-08 65.1 178 26.4
CSS0049833 Camellia sinensis var. sinensis HOM05D009149 ORTHO05D003639 1.0e-08 65.1 77 36.4
Migut.M01799 Erythranthe guttata HOM05D001371 ORTHO05D001319 1.8e-08 64.3 184 28.3
arahy.Tifrunner.gnm1.ann1.3479NA Arachis hypogaea HOM05D018927 ORTHO05D003639 3.0e-08 63.5 162 27.8
arahy.Tifrunner.gnm1.ann1.8YAR3M Arachis hypogaea HOM05D018927 ORTHO05D003639 3.0e-08 63.5 185 27.6
BolC5t31877H Brassica oleracea HOM05D001371 ORTHO05D001016 3.0e-08 63.5 182 26.9
Cc05_g13550 Coffea canephora HOM05D001371 ORTHO05D001319 3.0e-08 63.5 167 29.9
Oeu026052.1 Olea europaea HOM05D007843 ORTHO05D003639 3.0e-08 63.5 192 29.2
Oeu030161.1 Olea europaea HOM05D007843 ORTHO05D003639 3.0e-08 63.5 181 28.7
Oeu052606.1 Olea europaea HOM05D007843 ORTHO05D003639 3.0e-08 63.5 188 28.2
Oeu011203.1 Olea europaea HOM05D007843 ORTHO05D003639 3.9e-08 63.2 192 27.6
Oeu025616.1 Olea europaea HOM05D007843 ORTHO05D003639 3.9e-08 63.2 192 27.6
PGSC0003DMG400013917 Solanum tuberosum HOM05D001371 ORTHO05D001319 3.9e-08 63.2 159 28.3
arahy.Tifrunner.gnm1.ann1.D35KDK Arachis hypogaea HOM05D008778 ORTHO05D003639 5.1e-08 62.8 118 29.7
Cc05_g05620 Coffea canephora HOM05D001371 ORTHO05D001319 5.1e-08 62.8 165 27.9
FAN03G3315 Fragaria x ananassa HOM05D001371 ORTHO05D001319 5.1e-08 62.8 165 27.9
QL08p011662 Quercus lobata HOM05D001371 ORTHO05D001319 5.1e-08 62.8 173 28.9
Oeu044490.3 Olea europaea HOM05D007843 ORTHO05D003639 6.7e-08 62.4 188 29.8
Oeu021877.1 Olea europaea HOM05D007843 ORTHO05D003639 8.8e-08 62.0 188 28.7
Solyc07g064360.3 Solanum lycopersicum HOM05D001371 ORTHO05D001319 8.8e-08 62.0 160 28.8
FvH4_7g03072 Fragaria vesca HOM05D001371 ORTHO05D001319 1.1e-07 61.6 165 27.9
FAN06G0975 Fragaria x ananassa HOM05D001371 ORTHO05D001319 1.1e-07 61.6 165 27.9
Oeu055938.1 Olea europaea HOM05D007843 ORTHO05D003639 1.1e-07 61.6 188 29.3
Migut.M01798 Erythranthe guttata HOM05D001371 ORTHO05D001319 1.5e-07 61.2 184 27.7
Oeu036518.1 Olea europaea HOM05D007843 ORTHO05D003639 2.0e-07 60.8 188 28.2
Solyc07g064380.4 Solanum lycopersicum HOM05D001371 ORTHO05D001319 2.0e-07 60.8 165 26.1
MD03G1206300 Malus domestica HOM05D001371 ORTHO05D001319 3.3e-07 60.1 231 22.9
AT4G16050 Arabidopsis thaliana HOM05D001371 ORTHO05D001319 4.4e-07 59.7 167 28.1
Oeu033711.1 Olea europaea HOM05D007843 ORTHO05D003639 4.4e-07 59.7 192 29.2
Peaxi162Scf00820g00019 Petunia axillaris HOM05D008778 ORTHO05D003639 4.4e-07 59.7 188 29.3
Sed0015741 Sechium edule HOM05D001371 ORTHO05D001319 4.4e-07 59.7 160 27.5
Sopen07g032560 Solanum pennellii HOM05D001371 ORTHO05D001319 4.4e-07 59.7 179 26.3
MELO3C018073.2 Cucumis melo HOM05D001371 ORTHO05D001319 5.7e-07 59.3 177 26.0
Oeu043231.1 Olea europaea HOM05D007843 ORTHO05D003639 5.7e-07 59.3 188 27.7
Oeu064491.1 Olea europaea HOM05D007843 ORTHO05D003639 5.7e-07 59.3 192 26.6
RcHm_v2.0_Chr1g0320711 Rosa chinensis HOM05D008702 ORTHO05D003639 5.7e-07 59.3 120 32.5
RcHm_v2.0_Chr5g0038341 Rosa chinensis HOM05D001371 ORTHO05D001319 5.7e-07 59.3 179 26.8
Oeu007593.1 Olea europaea HOM05D001371 ORTHO05D001319 7.4e-07 58.9 194 27.8
Oeu026206.1 Olea europaea HOM05D007843 ORTHO05D003639 7.4e-07 58.9 186 26.9
Oeu050487.1 Olea europaea HOM05D007843 ORTHO05D003639 7.4e-07 58.9 168 29.2
Oeu000916.4 Olea europaea HOM05D007843 ORTHO05D003639 9.7e-07 58.5 181 27.6
Oeu030935.1 Olea europaea HOM05D007843 ORTHO05D003639 9.7e-07 58.5 188 27.1
Sopen07g032580 Solanum pennellii HOM05D001371 ORTHO05D001319 9.7e-07 58.5 165 26.1
ECA236G3969 Erigeron canadensis HOM05D001371 ORTHO05D001319 1.3e-06 58.2 177 27.7
Oeu021571.1 Olea europaea HOM05D007843 ORTHO05D003639 1.3e-06 58.2 173 28.3
QL08p011669 Quercus lobata HOM05D001371 ORTHO05D001319 1.7e-06 57.8 170 27.6
Nitab4.5_0007952g0010 Nicotiana tabacum HOM05D001371 ORTHO05D001319 2.2e-06 57.4 158 26.6
RcHm_v2.0_Chr5g0038251 Rosa chinensis HOM05D008702 ORTHO05D003639 2.2e-06 57.4 120 30.8
Oeu001108.1 Olea europaea HOM05D007843 ORTHO05D003639 2.8e-06 57.0 157 30.6
FvH4_4g05271 Fragaria vesca HOM05D019635 ORTHO05D029381 3.7e-06 56.6 188 27.7
Nitab4.5_0001604g0020 Nicotiana tabacum HOM05D001371 ORTHO05D001319 4.8e-06 56.2 158 26.6
Sopen07g032530 Solanum pennellii HOM05D001371 ORTHO05D001319 6.3e-06 55.8 158 28.5
FvH4_3g19371 Fragaria vesca HOM05D019635 ORTHO05D029381 8.2e-06 55.5 188 28.2
Oeu013418.1 Olea europaea HOM05D007843 ORTHO05D003639 8.2e-06 55.5 157 28.0


User provided reference genes

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