Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr1g0335951 Rosa chinensis HOM05D003398 ORTHO05D003867 2.3e-36 154.8 68 100.0
RcHm_v2.0_Chr1g0338001 Rosa chinensis HOM05D003398 ORTHO05D003867 2.3e-36 154.8 68 100.0
RcHm_v2.0_Chr6g0276241 Rosa chinensis HOM05D003398 ORTHO05D003867 2.3e-28 128.3 115 56.5
RcHm_v2.0_Chr7g0217921 Rosa chinensis HOM05D003398 ORTHO05D003867 1.3e-26 122.5 114 55.3
RcHm_v2.0_Chr7g0238211 Rosa chinensis HOM05D003398 ORTHO05D003867 6.3e-18 93.6 40 100.0
RcHm_v2.0_Chr7g0188211 Rosa chinensis HOM05D003398 ORTHO05D003867 4.1e-17 90.9 40 95.0
RcHm_v2.0_Chr1g0331021 Rosa chinensis HOM05D003398 ORTHO05D003867 4.5e-16 87.4 39 94.9
RcHm_v2.0_Chr2g0173661 Rosa chinensis HOM05D003398 ORTHO05D003867 1.2e-13 79.3 102 47.1
FvH4_2g09970 Fragaria vesca HOM05D003398 ORTHO05D003867 4.8e-10 67.4 102 39.2
FAN20G3040 Fragaria x ananassa HOM05D003398 ORTHO05D003867 4.8e-10 67.4 102 39.2
FAN24G2305 Fragaria x ananassa HOM05D003398 ORTHO05D003867 4.8e-10 67.4 102 39.2
FAN27G1215 Fragaria x ananassa HOM05D003398 ORTHO05D003867 4.8e-10 67.4 102 39.2
RcHm_v2.0_Chr6g0297731 Rosa chinensis HOM05D003398 ORTHO05D003867 6.3e-10 67.0 29 100.0
Sc18g0003950 Simmondsia chinensis HOM05D003398 ORTHO05D003867 8.3e-10 66.6 102 40.2
MELO3C021605.2 Cucumis melo HOM05D003398 ORTHO05D003867 1.4e-09 65.9 102 40.2
CsaV3_5G026890 Cucumis sativus L. HOM05D003398 ORTHO05D003867 1.4e-09 65.9 102 40.2
SalBow5G1640 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.4e-09 65.9 53 56.6
FAN15G2381 Fragaria x ananassa HOM05D003398 ORTHO05D003867 4.1e-09 64.3 102 38.2
CANSAT21G2202 Cannabis sativa HOM05D003398 ORTHO05D003867 9.1e-09 63.2 102 41.2
Prupe.3G296400 Prunus persica HOM05D003398 ORTHO05D003867 1.2e-08 62.8 102 38.2
AUR62034120 Chenopodium quinoa HOM05D003398 ORTHO05D003867 2.0e-08 62.0 102 38.2
Lj2g0003632 Lotus japonicus HOM05D003398 ORTHO05D003867 2.0e-08 62.0 102 36.3
Sed0013516 Sechium edule HOM05D003398 ORTHO05D003867 2.0e-08 62.0 102 38.2
CAN.G386.27 Capsicum annuum HOM05D003398 ORTHO05D003867 2.7e-08 61.6 102 37.3
PGSC0003DMG400011703 Solanum tuberosum HOM05D003398 ORTHO05D003867 2.7e-08 61.6 102 39.2
Atru.chr6.2457 Acer truncatum HOM05D003398 ORTHO05D003867 3.5e-08 61.2 102 38.2
Peaxi162Scf00418g00733 Petunia axillaris HOM05D003398 ORTHO05D003867 3.5e-08 61.2 102 37.3
vmacro05894 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 3.5e-08 61.2 102 37.3
ClCG00G004890 Citrullus lanatus HOM05D003398 ORTHO05D003867 4.5e-08 60.8 102 38.2
ClCG09G019490 Citrullus lanatus HOM05D003398 ORTHO05D003867 4.5e-08 60.8 102 38.2
EL10Ac4g09990 Beta vulgaris HOM05D003398 ORTHO05D003867 5.9e-08 60.5 102 37.3
Rhsim08G0047400 Rhododendron simsii HOM05D003398 ORTHO05D003867 5.9e-08 60.5 102 37.3
CAN.G1497.1 Capsicum annuum HOM05D003398 ORTHO05D003867 7.7e-08 60.1 102 36.3
Potri.001G339900 Populus trichocarpa HOM05D003398 ORTHO05D003867 7.7e-08 60.1 102 36.3
Cc07_g00160 Coffea canephora HOM05D003398 ORTHO05D003867 1.0e-07 59.7 102 37.3
Dinv33404 Davidia involucrata HOM05D003398 ORTHO05D003867 1.0e-07 59.7 102 37.3
Ciclev10016815m.g Citrus clementina HOM05D003398 ORTHO05D003867 1.3e-07 59.3 101 37.6
Oeu054646.1 Olea europaea HOM05D003398 ORTHO05D003867 1.3e-07 59.3 102 36.3
MD09G1020000 Malus domestica HOM05D003398 ORTHO05D003867 1.7e-07 58.9 102 37.3
Sabra16G0220000 Salix brachista HOM05D003398 ORTHO05D003867 1.7e-07 58.9 102 36.3
RhsimUnG0088100 Rhododendron simsii HOM05D003398 ORTHO05D003867 2.3e-07 58.5 102 35.3
Gohir.A07G224800 Gossypium hirsutum HOM05D003398 ORTHO05D003867 3.8e-07 57.8 102 34.3
Gohir.D07G232000 Gossypium hirsutum HOM05D003398 ORTHO05D003867 3.8e-07 57.8 102 34.3
Gorai.001G267200 Gossypium raimondii HOM05D003398 ORTHO05D003867 3.8e-07 57.8 102 34.3
Solyc01g009443.1 Solanum lycopersicum HOM05D003398 ORTHO05D003867 3.8e-07 57.8 102 37.3
Sopen01g004980 Solanum pennellii HOM05D003398 ORTHO05D003867 3.8e-07 57.8 102 37.3
Cfa007310 Carpinus fangiana HOM05D003398 ORTHO05D003867 5.0e-07 57.4 102 36.3
CiPaw.03G047800 Carya illinoinensis HOM05D003398 ORTHO05D003867 5.0e-07 57.4 102 35.3
Haze_14782 Corylus avellana HOM05D003398 ORTHO05D003867 5.0e-07 57.4 102 36.3
Manes.15G154000 Manihot esculenta HOM05D003398 ORTHO05D003867 5.0e-07 57.4 102 35.3
Manes.17G109300 Manihot esculenta HOM05D003398 ORTHO05D003867 5.0e-07 57.4 101 36.6
Lj1g0020548 Lotus japonicus HOM05D003398 ORTHO05D003867 6.6e-07 57.0 102 34.3
MD15G1129500 Malus domestica HOM05D003398 ORTHO05D003867 6.6e-07 57.0 102 36.3
RhsimUnG0005400 Rhododendron simsii HOM05D003398 ORTHO05D003867 6.6e-07 57.0 102 35.3
SalBow2G0798 Salvia bowleyana HOM05D003398 ORTHO05D003867 6.6e-07 57.0 80 41.2
Hund13034 Selenicereus undatus HOM05D003398 ORTHO05D003867 6.6e-07 57.0 102 36.3
Atru.chr11.509 Acer truncatum HOM05D003398 ORTHO05D003867 8.6e-07 56.6 40 62.5
Hund07917 Selenicereus undatus HOM05D003398 ORTHO05D003867 8.6e-07 56.6 102 35.3
QL02p073523 Quercus lobata HOM05D003398 ORTHO05D003867 1.1e-06 56.2 102 36.3
CSS0009448 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 1.5e-06 55.8 102 34.3
CSS0035127 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 1.5e-06 55.8 102 34.3
AUR62042865 Chenopodium quinoa HOM05D003398 ORTHO05D003867 1.5e-06 55.8 102 35.3
HanXRQChr15g0486781 Helianthus annuus HOM05D003398 ORTHO05D003867 1.5e-06 55.8 101 34.7
Lj7A603G63 Lonicera japonica HOM05D003398 ORTHO05D003867 1.5e-06 55.8 102 35.3
Oeu050452.1 Olea europaea HOM05D003398 ORTHO05D003867 1.9e-06 55.5 102 35.3
Sabra17G0099900 Salix brachista HOM05D003398 ORTHO05D003867 1.9e-06 55.5 102 34.3
Sabra17G0103200 Salix brachista HOM05D003398 ORTHO05D003867 1.9e-06 55.5 102 34.3
Thecc.04G022800 Theobroma cacao HOM05D003398 ORTHO05D003867 1.9e-06 55.5 102 35.3
vmacro18303 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 1.9e-06 55.5 102 35.3
arahy.Tifrunner.gnm1.ann1.YDW0SS Arachis hypogaea HOM05D003398 ORTHO05D003867 2.5e-06 55.1 102 34.3
AUR62037710 Chenopodium quinoa HOM05D003398 ORTHO05D003867 2.5e-06 55.1 102 35.3
HanXRQChr07g0199121 Helianthus annuus HOM05D003398 ORTHO05D003867 2.5e-06 55.1 101 34.7
PGR142G0179 Punica granatum HOM05D003398 ORTHO05D003867 2.5e-06 55.1 102 34.3
Ah.05g175590 Amaranthus hybridus HOM05D003398 ORTHO05D003867 3.3e-06 54.7 102 36.3
Lsat_1_v5_gn_4_184621 Lactuca sativa HOM05D003398 ORTHO05D003867 3.3e-06 54.7 101 34.7
Potri.017G120800 Populus trichocarpa HOM05D003398 ORTHO05D003867 3.3e-06 54.7 102 34.3
Lalb_Chr24g0403491 Lupinus albus HOM05D003398 ORTHO05D003867 4.2e-06 54.3 101 33.7
Duzib264G0348 Durio zibethinus HOM05D003398 ORTHO05D003867 5.5e-06 53.9 102 32.4
Actinidia36143 Actinidia chinensis HOM05D003398 ORTHO05D003867 7.2e-06 53.5 102 35.3
SGA_v2.0_scaffold34G13651 Striga asiatica HOM05D003398 ORTHO05D003867 9.5e-06 53.1 102 35.3


User provided reference genes

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